FFCP PHASE1:Mm9::chr7:90015961..90016009,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=108797 | |EntrezGene=108797 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=F8WJD6,Q69Z36 | |UniProt=F8WJD6,Q69Z36 | ||
|association_with_transcript=118bp_to_ENSMUST00000082237,NM_175366,uc009idj.2_5end | |association_with_transcript=118bp_to_ENSMUST00000082237,NM_175366,uc009idj.2_5end | ||
|cluster_id=chr7:90015961..90016009,+ | |||
|description=CAGE_peak_3_at_Mex3b_5end | |description=CAGE_peak_3_at_Mex3b_5end | ||
|id=chr7:90015961..90016009,+ | |id=chr7:90015961..90016009,+ | ||
|ontology_enrichment_celltype=CL:0000540!2.18e-12!33;CL:0000047!2.18e-12!33;CL:0000031!2.18e-12!33;CL:0000404!2.18e-12!33;CL:0000117!4.39e-09!23;CL:0000337!4.39e-09!23;CL:0000393!5.77e-09!39;CL:0000211!5.77e-09!39;CL:0000221!8.27e-09!44;CL:0000133!8.27e-09!44;CL:0002319!1.58e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.09e-23,23;CL:0000337,2.09e-23,23;CL:0000540,1.40e-22,33;CL:0000047,1.40e-22,33;CL:0000031,1.40e-22,33;CL:0000404,1.40e-22,33;CL:0000393,3.95e-18,39;CL:0000211,3.95e-18,39;CL:0002319,7.32e-16,43;CL:0000221,2.32e-15,44;CL:0000133,2.32e-15,44;CL:0002609,5.83e-11,6;CL:0002321,1.79e-07,70;CL:0002613,4.18e-07,3;CL:0000120,4.77e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.84e-10!73;UBERON:0005743!1.84e-10!73;UBERON:0000073!2.34e-10!75;UBERON:0001016!2.34e-10!75;UBERON:0004121!1.44e-09!102;UBERON:0000924!1.44e-09!102;UBERON:0006601!1.44e-09!102;UBERON:0002346!2.45e-09!71;UBERON:0003075!2.45e-09!71;UBERON:0007284!2.45e-09!71;UBERON:0003056!8.54e-08!49;UBERON:0001049!4.00e-07!52;UBERON:0005068!4.00e-07!52;UBERON:0006241!4.00e-07!52;UBERON:0007135!4.00e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.97e-13,73;UBERON:0004121,6.21e-13,95;UBERON:0000924,6.21e-13,95;UBERON:0006601,6.21e-13,95;UBERON:0001016,2.10e-12,75;UBERON:0002020,4.23e-12,34;UBERON:0002346,1.01e-11,64;UBERON:0003075,1.01e-11,64;UBERON:0007284,1.01e-11,64;UBERON:0010371,2.01e-10,73;UBERON:0003056,6.07e-10,49;UBERON:0000073,6.58e-10,54;UBERON:0001948,1.28e-09,5;UBERON:0002315,1.28e-09,5;UBERON:0001049,1.84e-09,52;UBERON:0005068,1.84e-09,52;UBERON:0006241,1.84e-09,52;UBERON:0007135,1.84e-09,52;UBERON:0002240,6.43e-08,6;UBERON:0005174,6.43e-08,6;UBERON:0001137,6.43e-08,6;UBERON:0010314,1.25e-07,92;UBERON:0002780,3.07e-07,39;UBERON:0001890,3.07e-07,39;UBERON:0006240,3.07e-07,39;UBERON:0003080,5.74e-07,40;UBERON:0003528,8.42e-07,29;UBERON:0002791,8.42e-07,29;UBERON:0001893,8.42e-07,29;UBERON:0000369,9.44e-07,5;UBERON:0002435,9.44e-07,5;UBERON:0000204,9.44e-07,5;UBERON:0010082,9.44e-07,5 | |||
|phase1_expression=1.28119077683835,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0.297872853602656,0.783599367416806,0,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405507724878058,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0.725362142011344,0,0,0,0,5.26022798234954,10.0508286061686,4.43681982454325,0,0,0.449949858640699,0,0,0,0.384218305321555,1.34796496001021,2.29510095163874,2.10324961351382,1.71390590642282,2.20868540951614,1.71487118900936,1.82106394934649,3.67687514644008,1.10115880999389,0,0,11.0784481693363,11.4359554503012,4.16730696445408,0,0,0.15279824777681,1.47314292736834,3.55929201997757,5.03278503728312,0.227178579999552,0.0755715601067855,0.289864488701678,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0.432982082022428,0.506719730950197,0.505524445014783,0,0,0,0.173485326766136,0.608930956624282,0.461230994512117,0.150722640552623,0.587943535678524,0,0,0,0,0.161766849947409,0.220841518460394,0,0,0.292780797011547,0.209446706813455,0,0.239630249011841,0,0.254140454146129,0.149790639404823,0,1.50785222535437,0.173824320192276,0.255715457330331,0.41557608911912,0,0.611036183101898,0,0,0,1.43132487258974,1.14951052216736,0.900310649026746,0.753524089178575,1.49680298132921,1.66547836370305,1.78033276663485,0,0.862271971731369,2.45837904218165,0.527853372491847,1.97276159184817,1.39023624612799,0.696504333044333,0.411564272815887,0.995171334092466,0,0,0,0.621377317606506,1.17263029990548,0.900310307305074,0.23674473558521,0.196764231747404,0.925602677324269,0.465067889500816,0.268273401399619,0,0.329119699826961,0,0.0810688095458557,0,0,0,0,2.57261530948211,0,0,0.853153002140936,1.16118335930219,0,0.80673409849337,0.22237804384487,0,0,0,0,0,0.19496408711912,0,0,0,0.948339504765408,0.913988100877831,0,0.203651327845314,0,0.210407459670956,0.189709611372772,0,0,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89491411770485,0,0.169745085775188,0.469380496577004,0,0.714130922658041,0.195133647857799,0.315270288212382,0.664394068946325,0.478364305972461,0,0,0,0,0,0,0,0,0.468846746368813,0,0,0.631016438832513,0.780877488593277,0.430846795465598,0.477937595905104,1.55959071857676,0.849229592366497,1.21443210502468,1.75353514746787,0.395287777946524,0.321321316421807,0,1.06839362200353,1.30309567482861,0.329940245945071,0,0.242780636154981,0,0.377210159511796,0,0,0.516856586336442,0,0.356497378384721,0,0,0,0.340439605753788,1.98067203434441,1.4229455216103,1.50035924522115,0.709360934569094,0.356737635204141,0.493647061806363,0.608929898229199,0,0,0,0,0,0.0603129249281559,0.119372344003136,0.164140899745061,0,0,0,0.412773735926445,0,0,0.136694227721025,0,0.339956859987711,0.69975726161829,0,0,0.790839983952838,0.813277868507395,0.432021363287205,0.209088296014469,0.655087691238533,0.134864346384821,0.247960367176008,0,0,0,1.12738587736838,0.149516546043979,0.827292452285488,1.36115831840833,0.387479470433193,0.675824501963113,0.469428954583016,0.911430693907651,0.419437377702843,0,0,0,0.202725215290164,0.205421914329655,0,0.179026695667481,0.198681354781265,0,0,0,0.15241361331,0,0.194915761479505,0,0,0,0,0,0,0,0,0.183151624267265,0.428736758158132,0,1.12950368523413,0.460325236507177,0.572895513439397,0.343706364687375,0.685082519770642,0,0.675022500231806,0,0.453142408984205,0.51776031175182,2.07574695168353,1.19707462020309,1.36586884603307,0.972426868273176,0.628839487883947,1.65459157605013,0.44449345560323,0.206035057238894,0,1.01078884705519,0.760437899670719,1.13175804831646,0.655490552289177,0.704276676453562,0.631790158511746,0.476293691283074,0.811190281613988,0.578727661391115,0,0.441596760403192,0.685738504770831,0.532427418478012,0.715308569841963,1.0174249164263,0.658765662907314,0.592302255241736,1.09756783723664,1.05227884575137,0.814824683075171,0,0.949080144993393,1.0835493061312,0.818462086339379,0.464810523557898,0.578719832943424,1.24905288968973,0.701794825336225,0.859484216193193,0.382576664137687,0,0 | |phase1_expression=1.28119077683835,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0.297872853602656,0.783599367416806,0,0.22940928106717,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405507724878058,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0.725362142011344,0,0,0,0,5.26022798234954,10.0508286061686,4.43681982454325,0,0,0.449949858640699,0,0,0,0.384218305321555,1.34796496001021,2.29510095163874,2.10324961351382,1.71390590642282,2.20868540951614,1.71487118900936,1.82106394934649,3.67687514644008,1.10115880999389,0,0,11.0784481693363,11.4359554503012,4.16730696445408,0,0,0.15279824777681,1.47314292736834,3.55929201997757,5.03278503728312,0.227178579999552,0.0755715601067855,0.289864488701678,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0.432982082022428,0.506719730950197,0.505524445014783,0,0,0,0.173485326766136,0.608930956624282,0.461230994512117,0.150722640552623,0.587943535678524,0,0,0,0,0.161766849947409,0.220841518460394,0,0,0.292780797011547,0.209446706813455,0,0.239630249011841,0,0.254140454146129,0.149790639404823,0,1.50785222535437,0.173824320192276,0.255715457330331,0.41557608911912,0,0.611036183101898,0,0,0,1.43132487258974,1.14951052216736,0.900310649026746,0.753524089178575,1.49680298132921,1.66547836370305,1.78033276663485,0,0.862271971731369,2.45837904218165,0.527853372491847,1.97276159184817,1.39023624612799,0.696504333044333,0.411564272815887,0.995171334092466,0,0,0,0.621377317606506,1.17263029990548,0.900310307305074,0.23674473558521,0.196764231747404,0.925602677324269,0.465067889500816,0.268273401399619,0,0.329119699826961,0,0.0810688095458557,0,0,0,0,2.57261530948211,0,0,0.853153002140936,1.16118335930219,0,0.80673409849337,0.22237804384487,0,0,0,0,0,0.19496408711912,0,0,0,0.948339504765408,0.913988100877831,0,0.203651327845314,0,0.210407459670956,0.189709611372772,0,0,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89491411770485,0,0.169745085775188,0.469380496577004,0,0.714130922658041,0.195133647857799,0.315270288212382,0.664394068946325,0.478364305972461,0,0,0,0,0,0,0,0,0.468846746368813,0,0,0.631016438832513,0.780877488593277,0.430846795465598,0.477937595905104,1.55959071857676,0.849229592366497,1.21443210502468,1.75353514746787,0.395287777946524,0.321321316421807,0,1.06839362200353,1.30309567482861,0.329940245945071,0,0.242780636154981,0,0.377210159511796,0,0,0.516856586336442,0,0.356497378384721,0,0,0,0.340439605753788,1.98067203434441,1.4229455216103,1.50035924522115,0.709360934569094,0.356737635204141,0.493647061806363,0.608929898229199,0,0,0,0,0,0.0603129249281559,0.119372344003136,0.164140899745061,0,0,0,0.412773735926445,0,0,0.136694227721025,0,0.339956859987711,0.69975726161829,0,0,0.790839983952838,0.813277868507395,0.432021363287205,0.209088296014469,0.655087691238533,0.134864346384821,0.247960367176008,0,0,0,1.12738587736838,0.149516546043979,0.827292452285488,1.36115831840833,0.387479470433193,0.675824501963113,0.469428954583016,0.911430693907651,0.419437377702843,0,0,0,0.202725215290164,0.205421914329655,0,0.179026695667481,0.198681354781265,0,0,0,0.15241361331,0,0.194915761479505,0,0,0,0,0,0,0,0,0.183151624267265,0.428736758158132,0,1.12950368523413,0.460325236507177,0.572895513439397,0.343706364687375,0.685082519770642,0,0.675022500231806,0,0.453142408984205,0.51776031175182,2.07574695168353,1.19707462020309,1.36586884603307,0.972426868273176,0.628839487883947,1.65459157605013,0.44449345560323,0.206035057238894,0,1.01078884705519,0.760437899670719,1.13175804831646,0.655490552289177,0.704276676453562,0.631790158511746,0.476293691283074,0.811190281613988,0.578727661391115,0,0.441596760403192,0.685738504770831,0.532427418478012,0.715308569841963,1.0174249164263,0.658765662907314,0.592302255241736,1.09756783723664,1.05227884575137,0.814824683075171,0,0.949080144993393,1.0835493061312,0.818462086339379,0.464810523557898,0.578719832943424,1.24905288968973,0.701794825336225,0.859484216193193,0.382576664137687,0,0 | ||
|short_description=p3@Mex3b | |short_description=p3@Mex3b | ||
}} | }} |
Latest revision as of 04:32, 27 September 2015
Short description: | p3@Mex3b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Mex3b_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 118bp_to_ENSMUST00000082237, NM_175366, uc009idj.2_5end |
EntrezGene: | Mex3b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.09e-23 | 23 |
neuroblast (sensu Vertebrata) | 2.09e-23 | 23 |
neuron | 1.40e-22 | 33 |
neuronal stem cell | 1.40e-22 | 33 |
neuroblast | 1.40e-22 | 33 |
electrically signaling cell | 1.40e-22 | 33 |
electrically responsive cell | 3.95e-18 | 39 |
electrically active cell | 3.95e-18 | 39 |
neural cell | 7.32e-16 | 43 |
ectodermal cell | 2.32e-15 | 44 |
neurectodermal cell | 2.32e-15 | 44 |
neuron of cerebral cortex | 5.83e-11 | 6 |
embryonic cell | 1.79e-07 | 70 |
striatum neuron | 4.18e-07 | 3 |
granule cell | 4.77e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.97e-13 | 73 |
ectoderm-derived structure | 6.21e-13 | 95 |
ectoderm | 6.21e-13 | 95 |
presumptive ectoderm | 6.21e-13 | 95 |
nervous system | 2.10e-12 | 75 |
gray matter | 4.23e-12 | 34 |
neurectoderm | 1.01e-11 | 64 |
neural plate | 1.01e-11 | 64 |
presumptive neural plate | 1.01e-11 | 64 |
ecto-epithelium | 2.01e-10 | 73 |
pre-chordal neural plate | 6.07e-10 | 49 |
regional part of nervous system | 6.58e-10 | 54 |
regional part of spinal cord | 1.28e-09 | 5 |
gray matter of spinal cord | 1.28e-09 | 5 |
neural tube | 1.84e-09 | 52 |
neural rod | 1.84e-09 | 52 |
future spinal cord | 1.84e-09 | 52 |
neural keel | 1.84e-09 | 52 |
spinal cord | 6.43e-08 | 6 |
dorsal region element | 6.43e-08 | 6 |
dorsum | 6.43e-08 | 6 |
structure with developmental contribution from neural crest | 1.25e-07 | 92 |
regional part of forebrain | 3.07e-07 | 39 |
forebrain | 3.07e-07 | 39 |
future forebrain | 3.07e-07 | 39 |
anterior neural tube | 5.74e-07 | 40 |
brain grey matter | 8.42e-07 | 29 |
regional part of telencephalon | 8.42e-07 | 29 |
telencephalon | 8.42e-07 | 29 |
corpus striatum | 9.44e-07 | 5 |
striatum | 9.44e-07 | 5 |
ventral part of telencephalon | 9.44e-07 | 5 |
future corpus striatum | 9.44e-07 | 5 |