Personal tools

MCL coexpression mm9:1137: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.415221905584215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246840566602479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157169655903251,0,0,0,0,0,0,0,0,0,0,0.736473165531812,0.798644417018446,0.681511539650463,0,0,0,0,0,0,0.141204588184303,0.991829106634687,1.02470816082175,0.983325081571549,0.330941898710929,0.323116468687679,0.770824920287522,0.853339810226476,0.87125360626049,0.322458878535173,0.595144320159142,0.519052919921304,0.717700553756812,0.701175502433128,0.754976410581425,0.470451800356371,0.429475765992591,0.496815591913635,0.486061930039393,0.454971602226302,0.723224691893847,0.0306534548852342,0.0611293222874226,0,0,0,0,0,0,0.0570741246689917,0,0,0,0.194062795919081,0,0,0,0,0,0,0.0800598996806496,0,0.112901225419538,0.271243548560592,0.281804960444581,0.228360955155464,0.279743541756844,0.20083505566084,0.0514097768499148,0,0,0,0,0,0,0,0.904539148489321,1.05164978988089,0.0332643612527905,0,0,0,0.54979272321513,0.28216905172576,0.761541864706321,0.557190063546089,0.518703292570475,0.543255344169442,0.492639778042444,0,0,0,0.35461759784091,0.361955201335006,0.625171381355822,0.711083841617052,0.807898373890336,0.852680315997094,0.963753747969886,1.04974072174324,0.902274431516478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520246267719603,0.750562971906833,0,0,0.154295065934854,0.165681471080581,0.180547299228779,0.147171275172461,0.159794533105191,0.0756292965920817,0,0.0662136857075299,0,0.0788034163803455,0,0,0,0,0,0.046982063026719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255936214892323,0.421762417454495,0,0,0.354498912916905,0.47014485227389,0.468171594617126,0.0930603692915911,0.368620065431566,0.266990834635525,0.305548890797361,0.559942841197511,0.473696970333309,0.788249073293232,0,0,0,0,0,0.106353068726871,0.105303433054552,0.0750375819757342,0,0.0508826556239974,0.0998284739419172,0,0,0,0,0,0.608949045523107,0.235590146712142,0.335303042395549,0.359080445532538,0.447393560961212,0.444620584739459,0.540108555340281,0.451293499386541,0,0,0,0,0,0,0,0,0,0.361345699164688,0,0,0,0,0,0,0,0,0,0,0.0637715600712905,0.0803809427109337,0.121893240712599,0.0824580172145032,0.0857765460992942,0,0.034489466458534,0,0.0529304404135566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328278395983124,0.748440183111848,0.517404685814234,0.593452673391277,0.485046405834616,0.604396236116953,0.640989224902194,0.618283328781554,0.66512481471733,0.665048084301853,0.473042902048171,0.661928468774975,0.677254568377972,0.345478337900882,0.211878289366281,0.283124204565645,0.276228948705051,0.149856261570464,0.415740377253264,0.354777823948731,0.245620709720879,0.288502238404483,0.327092776381379,0.370055460896091,0.36567809424321,0.2103656701964,0.284898528886841,0.415315025378076,0.14986111676545,0.393046569245674,0.307198081843346,0.314889525375005,0.290867826191594,0.304797380326681,0.365025613166692,0.322217206515248,0.282087097036683,0.252661106676919,0.372551377540124,0.326803611095607,0.315490712562034,0.318803782272219,0.259704250749409,0.319013960014458,0.29325934057586,0.511655490560328,0.230907198759394,0.141842558461921,0.0760168881589905,0,0
|coexpression_dpi_cluster_scores_median=0.415221905584215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246840566602479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157169655903251,0,0,0,0,0,0,0,0,0,0,0.736473165531812,0.798644417018446,0.681511539650463,0,0,0,0,0,0,0.141204588184303,0.991829106634687,1.02470816082175,0.983325081571549,0.330941898710929,0.323116468687679,0.770824920287522,0.853339810226476,0.87125360626049,0.322458878535173,0.595144320159142,0.519052919921304,0.717700553756812,0.701175502433128,0.754976410581425,0.470451800356371,0.429475765992591,0.496815591913635,0.486061930039393,0.454971602226302,0.723224691893847,0.0306534548852342,0.0611293222874226,0,0,0,0,0,0,0.0570741246689917,0,0,0,0.194062795919081,0,0,0,0,0,0,0.0800598996806496,0,0.112901225419538,0.271243548560592,0.281804960444581,0.228360955155464,0.279743541756844,0.20083505566084,0.0514097768499148,0,0,0,0,0,0,0,0.904539148489321,1.05164978988089,0.0332643612527905,0,0,0,0.54979272321513,0.28216905172576,0.761541864706321,0.557190063546089,0.518703292570475,0.543255344169442,0.492639778042444,0,0,0,0.35461759784091,0.361955201335006,0.625171381355822,0.711083841617052,0.807898373890336,0.852680315997094,0.963753747969886,1.04974072174324,0.902274431516478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520246267719603,0.750562971906833,0,0,0.154295065934854,0.165681471080581,0.180547299228779,0.147171275172461,0.159794533105191,0.0756292965920817,0,0.0662136857075299,0,0.0788034163803455,0,0,0,0,0,0.046982063026719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255936214892323,0.421762417454495,0,0,0.354498912916905,0.47014485227389,0.468171594617126,0.0930603692915911,0.368620065431566,0.266990834635525,0.305548890797361,0.559942841197511,0.473696970333309,0.788249073293232,0,0,0,0,0,0.106353068726871,0.105303433054552,0.0750375819757342,0,0.0508826556239974,0.0998284739419172,0,0,0,0,0,0.608949045523107,0.235590146712142,0.335303042395549,0.359080445532538,0.447393560961212,0.444620584739459,0.540108555340281,0.451293499386541,0,0,0,0,0,0,0,0,0,0.361345699164688,0,0,0,0,0,0,0,0,0,0,0.0637715600712905,0.0803809427109337,0.121893240712599,0.0824580172145032,0.0857765460992942,0,0.034489466458534,0,0.0529304404135566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328278395983124,0.748440183111848,0.517404685814234,0.593452673391277,0.485046405834616,0.604396236116953,0.640989224902194,0.618283328781554,0.66512481471733,0.665048084301853,0.473042902048171,0.661928468774975,0.677254568377972,0.345478337900882,0.211878289366281,0.283124204565645,0.276228948705051,0.149856261570464,0.415740377253264,0.354777823948731,0.245620709720879,0.288502238404483,0.327092776381379,0.370055460896091,0.36567809424321,0.2103656701964,0.284898528886841,0.415315025378076,0.14986111676545,0.393046569245674,0.307198081843346,0.314889525375005,0.290867826191594,0.304797380326681,0.365025613166692,0.322217206515248,0.282087097036683,0.252661106676919,0.372551377540124,0.326803611095607,0.315490712562034,0.318803782272219,0.259704250749409,0.319013960014458,0.29325934057586,0.511655490560328,0.230907198759394,0.141842558461921,0.0760168881589905,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000540!5.51e-20!33;CL:0000047!5.51e-20!33;CL:0000031!5.51e-20!33;CL:0000404!5.51e-20!33;CL:0000117!3.44e-16!23;CL:0000337!3.44e-16!23;CL:0000221!3.95e-15!44;CL:0000133!3.95e-15!44;CL:0002319!5.90e-15!43;CL:0000393!1.02e-14!39;CL:0000211!1.02e-14!39;CL:0000055!2.16e-11!49
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!1.16e-36!64;UBERON:0003075!1.16e-36!64;UBERON:0007284!1.16e-36!64;UBERON:0001017!3.54e-35!73;UBERON:0001016!3.61e-35!75;UBERON:0004121!3.75e-35!95;UBERON:0000924!3.75e-35!95;UBERON:0006601!3.75e-35!95;UBERON:0010371!4.21e-31!73;UBERON:0003056!1.01e-29!49;UBERON:0000073!6.08e-29!54;UBERON:0001049!1.27e-27!52;UBERON:0005068!1.27e-27!52;UBERON:0006241!1.27e-27!52;UBERON:0007135!1.27e-27!52;UBERON:0000955!3.03e-25!47;UBERON:0006238!3.03e-25!47;UBERON:0010314!1.17e-24!92;UBERON:0002616!2.18e-24!46;UBERON:0003080!1.02e-22!40;UBERON:0002780!4.71e-22!39;UBERON:0001890!4.71e-22!39;UBERON:0006240!4.71e-22!39;UBERON:0002020!1.35e-19!34;UBERON:0003528!4.69e-17!29;UBERON:0002791!4.69e-17!29;UBERON:0001893!4.69e-17!29;UBERON:0000956!2.95e-12!21;UBERON:0001869!2.95e-12!21;UBERON:0000203!2.95e-12!21;UBERON:0002619!3.87e-09!17;UBERON:0000970!1.13e-07!9;UBERON:0000019!1.13e-07!9;UBERON:0000047!1.13e-07!9;UBERON:0010312!1.13e-07!9;UBERON:0004088!1.13e-07!9;UBERON:0002104!1.13e-07!9;UBERON:0001456!1.13e-07!9;UBERON:0003072!1.13e-07!9;UBERON:0004128!1.13e-07!9;UBERON:0003071!1.13e-07!9;UBERON:0002021!1.79e-07!10;UBERON:0000411!1.79e-07!10;UBERON:0001950!1.79e-07!10;UBERON:0000020!4.77e-07!12;UBERON:0001032!4.77e-07!12;UBERON:0004456!4.77e-07!12
}}
}}

Revision as of 16:23, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:60996517..60996540,+p@chr14:60996517..60996540
+
Mm9::chr14:60997132..60997208,+p1@Fam123a
Mm9::chr14:65208639..65208685,+p2@ENSMUST00000164162
Mm9::chr2:181501988..181502026,+p3@Myt1
Mm9::chr2:181502048..181502090,+p@chr2:181502048..181502090
+
Mm9::chr5:117041820..117041839,-p1@Srrm4
Mm9::chr5:117041867..117041874,-p3@Srrm4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
neurectoderm1.16e-3664
neural plate1.16e-3664
presumptive neural plate1.16e-3664
central nervous system3.54e-3573
nervous system3.61e-3575
ectoderm-derived structure3.75e-3595
ectoderm3.75e-3595
presumptive ectoderm3.75e-3595
ecto-epithelium4.21e-3173
pre-chordal neural plate1.01e-2949
regional part of nervous system6.08e-2954
neural tube1.27e-2752
neural rod1.27e-2752
future spinal cord1.27e-2752
neural keel1.27e-2752
brain3.03e-2547
future brain3.03e-2547
structure with developmental contribution from neural crest1.17e-2492
regional part of brain2.18e-2446
anterior neural tube1.02e-2240
regional part of forebrain4.71e-2239
forebrain4.71e-2239
future forebrain4.71e-2239
gray matter1.35e-1934
brain grey matter4.69e-1729
regional part of telencephalon4.69e-1729
telencephalon4.69e-1729
cerebral cortex2.95e-1221
cerebral hemisphere2.95e-1221
pallium2.95e-1221
regional part of cerebral cortex3.87e-0917
eye1.13e-079
camera-type eye1.13e-079
simple eye1.13e-079
immature eye1.13e-079
ocular region1.13e-079
visual system1.13e-079
face1.13e-079
optic cup1.13e-079
optic vesicle1.13e-079
eye primordium1.13e-079
occipital lobe1.79e-0710
visual cortex1.79e-0710
neocortex1.79e-0710
sense organ4.77e-0712
sensory system4.77e-0712
entire sense organ system4.77e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}