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MCL coexpression mm9:3435: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0.064513712786576,0,0,0,0,0,0,0,0.988063773977161,0.805057781345684,0.708355558751847,0.372198641335665,0.127882415780397,0.0699790221274244,0,0,0,0,0,0,0.0986886653414259,0.290312903159146,0.142972861465138,0.000186064453731705,0,0,0,0,0,0.0267965498383601,0,0.463159893459509,0.208189948540879,0,0,0,0,0,0,0,0.180849157631461,0,0,0.0514985917256918,0.0419359757688424,0,0,0,0,0.0771606661507038,0.0568996784870888,0,0.302481506279645,0,0.223284998180554,0.180274689346406,0,0,0,0,0,0,0.243921478367005,0.0970752313260899,0,0,0.0320110955971188,0.141204588184303,0,0,0,0.196259654667371,0.0866689030825281,0,0,0,0.466436098310589,0.305673467386311,0.377025398968837,0,0.0079428213690983,0,0.379471405597773,0.193893011938994,0.282574418667431,0,0,0.0742309351586685,0.139448029345379,0.0611293222874226,0.437621671121112,0,0.643438528968778,0,0,0.44593214273782,0.152695919012311,0.0683455646190839,0,0.13140678169188,0.0371597901658113,0,0,0,0.0548146289109692,0,0.177687811491981,0.516360509636566,0,0.159965940640837,0,0,0,0,0,0,0,0.303670173088072,0,0,0,0,0,0.336684465725675,0.264295134298998,0,0.0491463288895459,0,0,0.311443277314482,0.668386366133206,0.00575978074810135,0.310256870570088,0.518703292570475,0.210415946511272,0.295225594521175,0,0,0,0.0829439327499637,0.0357340877549765,0,0,0,0,0,0,0.0999233952154288,0,0.0752205997629372,0,0,0,0,0,0.0788315948399074,0.231013950740173,0.0994554632344034,0.108620321524749,0,0,0.059541116793126,0,0,0.0623063220167371,0,0,0.0479619276176895,0,0,0,0,0,0,0.152465664603217,0,0,0,0,0.0906941294286938,0.099589119834654,0,0,0,0,0,0,0,0,0,0,0,0.0746701132428201,0,0,0,0,0,0,0.159215297421721,0,0,0.736140584113455,0,0,0,0,0,0,0,0.0652566657696677,0,0,0,0,0,0,0,0.360455631223589,0,0.0655666358230307,0,0,0,0,0,0,0,0,0.0659019793256198,0,0,0,0,0,0,0.215426671903518,0.260186342962283,0,0,0,0.143151860801801,0,0,0,0,0,0,0.11307773422846,0.293133511567635,0.118359301007956,0,0,0.220076820822573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0528318955547673,0.0843392403965415,0.131836868893058,0.00108633980061024,0.0661577744756082,0.281804600099495,0.0915514965999916,0.0791461522103688,0,0.219989036254386,0.139524398825638,0,0.0489745727197172,0.0579366064531838,0,0.39504709930654,0,0,0,0,0,0,0.0430713643961824,0.056886356216389,0.0562185712770556,0,0,0,0,0,0,0,0.0477775156942158,0,0,0.209873913294111,0,0,0,0,0,0,0.0481920468563092,0.100511416252052,0.118786370903246,0.0939761495634833,0.0646869551454933,0,0.00382521778169737,0,0,0,0,0,0,0,0,0,0,0,0,0.162403313502186,0,0.0373124733443448,0,0,0,0,0.0843504501108034,0,0.513085342652956,0.283448337556827,0.58709079061676,0.509752285554761,0.374778587894724,0.244374584202533,0.806192188470264,0.618283328781554,0.891935116888402,0.752804369432746,0.262521990389543,0,0,0.016870054389626,0,0,0,0,0,0,0,0,0.0388749848471105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!2.77e-13!54;UBERON:0004121!9.03e-13!95;UBERON:0000924!9.03e-13!95;UBERON:0006601!9.03e-13!95;UBERON:0001016!1.15e-12!75;UBERON:0001049!5.89e-12!52;UBERON:0005068!5.89e-12!52;UBERON:0006241!5.89e-12!52;UBERON:0007135!5.89e-12!52;UBERON:0001017!6.06e-12!73;UBERON:0000955!1.24e-11!47;UBERON:0006238!1.24e-11!47;UBERON:0002616!5.02e-11!46;UBERON:0010371!7.04e-11!73;UBERON:0002346!4.65e-10!64;UBERON:0003075!4.65e-10!64;UBERON:0007284!4.65e-10!64;UBERON:0002021!5.09e-10!10;UBERON:0000411!5.09e-10!10;UBERON:0001950!5.09e-10!10;UBERON:0003080!1.09e-09!40;UBERON:0002780!4.46e-09!39;UBERON:0001890!4.46e-09!39;UBERON:0006240!4.46e-09!39;UBERON:0003056!4.37e-08!49;UBERON:0002020!3.48e-07!34;UBERON:0003528!5.97e-07!29;UBERON:0002791!5.97e-07!29;UBERON:0001893!5.97e-07!29;UBERON:0010314!7.66e-07!92
}}
}}

Revision as of 20:03, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:95685954..95685970,-p4@Gm129
Mm9::chr3:95686104..95686113,-p3@Gm129
Mm9::chr3:95686116..95686154,-p1@Gm129


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
regional part of nervous system2.77e-1354
ectoderm-derived structure9.03e-1395
ectoderm9.03e-1395
presumptive ectoderm9.03e-1395
nervous system1.15e-1275
neural tube5.89e-1252
neural rod5.89e-1252
future spinal cord5.89e-1252
neural keel5.89e-1252
central nervous system6.06e-1273
brain1.24e-1147
future brain1.24e-1147
regional part of brain5.02e-1146
ecto-epithelium7.04e-1173
neurectoderm4.65e-1064
neural plate4.65e-1064
presumptive neural plate4.65e-1064
occipital lobe5.09e-1010
visual cortex5.09e-1010
neocortex5.09e-1010
anterior neural tube1.09e-0940
regional part of forebrain4.46e-0939
forebrain4.46e-0939
future forebrain4.46e-0939
pre-chordal neural plate4.37e-0849
gray matter3.48e-0734
brain grey matter5.97e-0729
regional part of telencephalon5.97e-0729
telencephalon5.97e-0729
structure with developmental contribution from neural crest7.66e-0792


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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