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MCL coexpression mm9:3472: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002320!5.78e-09!46;CL:0000134!5.78e-09!46;CL:0000988!7.35e-09!32;CL:0002032!7.35e-09!32;CL:0000037!7.35e-09!32;CL:0000566!7.35e-09!32;CL:0000837!7.35e-09!32;CL:0002031!1.51e-07!25
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!2.09e-21!48;UBERON:0002405!2.09e-21!48;UBERON:0001007!3.23e-20!116;UBERON:0001555!3.23e-20!116;UBERON:0007026!3.23e-20!116;UBERON:0002390!3.92e-20!45;UBERON:0003061!3.92e-20!45;UBERON:0004119!9.32e-20!118;UBERON:0000925!9.32e-20!118;UBERON:0006595!9.32e-20!118;UBERON:0004921!2.09e-19!114;UBERON:0003929!3.81e-14!55;UBERON:0000490!1.42e-13!66;UBERON:0005911!1.02e-12!69;UBERON:0004177!1.12e-12!29;UBERON:0005057!1.12e-12!29;UBERON:0005409!2.82e-11!47;UBERON:0000077!9.00e-11!35;UBERON:0003081!1.88e-10!87;UBERON:0001041!5.53e-10!80;UBERON:0002370!1.18e-09!23;UBERON:0000974!1.18e-09!23;UBERON:0004807!1.18e-09!23;UBERON:0005058!1.18e-09!23;UBERON:0003351!1.18e-09!23;UBERON:0009113!1.18e-09!23;UBERON:0003295!1.18e-09!23;UBERON:0009722!1.18e-09!23;UBERON:0005562!1.18e-09!23;UBERON:0007690!1.18e-09!23;UBERON:0000160!1.77e-09!31;UBERON:0003408!2.72e-09!24;UBERON:0004923!2.85e-09!24;UBERON:0002384!5.78e-09!46;UBERON:0006562!8.81e-09!24;UBERON:0001557!8.81e-09!24;UBERON:0001042!8.81e-09!24;UBERON:0008814!8.81e-09!24;UBERON:0009145!8.81e-09!24;UBERON:0002371!3.39e-08!16;UBERON:0000344!9.21e-08!15;UBERON:0002204!1.22e-07!32;UBERON:0001242!3.65e-07!13;UBERON:0000060!3.65e-07!13;UBERON:0001262!3.65e-07!13;UBERON:0004786!3.65e-07!13;UBERON:0000072!6.93e-07!27;UBERON:0001474!9.80e-07!22;UBERON:0004765!9.80e-07!22;UBERON:0001434!9.80e-07!22
}}
}}

Revision as of 20:07, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr4:154302192..154302203,-p6@Tnfrsf14
Mm9::chr4:154302212..154302256,-p2@Tnfrsf14
Mm9::chr4:154302265..154302283,-p3@Tnfrsf14


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
hemolymphoid system2.09e-2148
immune system2.09e-2148
digestive system3.23e-20116
digestive tract3.23e-20116
primitive gut3.23e-20116
hematopoietic system3.92e-2045
blood island3.92e-2045
endoderm-derived structure9.32e-20118
endoderm9.32e-20118
presumptive endoderm9.32e-20118
subdivision of digestive tract2.09e-19114
gut epithelium3.81e-1455
unilaminar epithelium1.42e-1366
endo-epithelium1.02e-1269
hemopoietic organ1.12e-1229
immune organ1.12e-1229
gastrointestinal system2.82e-1147
mixed endoderm/mesoderm-derived structure9.00e-1135
lateral plate mesoderm1.88e-1087
foregut5.53e-1080
thymus1.18e-0923
neck1.18e-0923
respiratory system epithelium1.18e-0923
hemolymphoid system gland1.18e-0923
pharyngeal epithelium1.18e-0923
thymic region1.18e-0923
pharyngeal gland1.18e-0923
entire pharyngeal arch endoderm1.18e-0923
thymus primordium1.18e-0923
early pharyngeal endoderm1.18e-0923
intestine1.77e-0931
gland of gut2.72e-0924
organ component layer2.85e-0924
connective tissue5.78e-0946
pharynx8.81e-0924
upper respiratory tract8.81e-0924
chordate pharynx8.81e-0924
pharyngeal arch system8.81e-0924
pharyngeal region of foregut8.81e-0924
bone marrow3.39e-0816
mucosa9.21e-0815
musculoskeletal system1.22e-0732
intestinal mucosa3.65e-0713
anatomical wall3.65e-0713
wall of intestine3.65e-0713
gastrointestinal system mucosa3.65e-0713
segment of respiratory tract6.93e-0727
bone element9.80e-0722
skeletal element9.80e-0722
skeletal system9.80e-0722


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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