MCL coexpression mm9:1606

Phase1 CAGE Peaks

	Short description
Mm9::chr11:98300255..98300322,-	p1@1810046J19Rik
Mm9::chr13:19487597..19487658,-	p1@Stard3nl
Mm9::chr14:30781555..30781648,+	p1@Selk
Mm9::chr4:41670161..41670211,-	p1@Dctn3
Mm9::chr7:31016741..31016809,-	p1@Tbcb

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0008430	selenium binding	0.00169741218953969
GO:0007017	microtubule-based process	0.0276633551032979
GO:0005869	dynactin complex	0.0361631995205185
GO:0015630	microtubule cytoskeleton	0.0361631995205185

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

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Cell Type

Ontology term	p-value	n
non-terminally differentiated cell	6.83e-19	49
ectodermal cell	6.46e-18	44
neurectodermal cell	6.46e-18	44
embryonic cell	1.17e-17	70
neural cell	1.48e-17	43
CNS neuron (sensu Vertebrata)	2.79e-13	23
neuroblast (sensu Vertebrata)	2.79e-13	23
electrically responsive cell	4.01e-13	39
electrically active cell	4.01e-13	39
neuron	7.59e-12	33
neuronal stem cell	7.59e-12	33
neuroblast	7.59e-12	33
electrically signaling cell	7.59e-12	33
somatic cell	8.80e-12	118
animal cell	1.93e-10	115
eukaryotic cell	1.93e-10	115
somatic stem cell	4.48e-07	91
multi fate stem cell	4.48e-07	91
migratory neural crest cell	5.88e-07	10
neuron associated cell	5.88e-07	10
glial cell (sensu Vertebrata)	5.88e-07	10
neuron associated cell (sensu Vertebrata)	5.88e-07	10
glial cell	5.88e-07	10
glioblast	5.88e-07	10
glioblast (sensu Vertebrata)	5.88e-07	10

Uber Anatomy

Ontology term	p-value	n
nervous system	5.18e-27	75
central nervous system	4.27e-26	73
regional part of nervous system	2.00e-21	54
ectoderm-derived structure	4.68e-21	95
ectoderm	4.68e-21	95
presumptive ectoderm	4.68e-21	95
neural tube	1.87e-20	52
neural rod	1.87e-20	52
future spinal cord	1.87e-20	52
neural keel	1.87e-20	52
neurectoderm	8.12e-19	64
neural plate	8.12e-19	64
presumptive neural plate	8.12e-19	64
brain	2.08e-17	47
future brain	2.08e-17	47
regional part of brain	3.41e-17	46
gray matter	1.49e-16	34
structure with developmental contribution from neural crest	1.76e-15	92
ecto-epithelium	5.87e-15	73
anterior neural tube	9.52e-15	40
regional part of forebrain	1.97e-14	39
forebrain	1.97e-14	39
future forebrain	1.97e-14	39
brain grey matter	8.48e-14	29
regional part of telencephalon	8.48e-14	29
telencephalon	8.48e-14	29
pre-chordal neural plate	2.82e-13	49
cerebral cortex	8.15e-10	21
cerebral hemisphere	8.15e-10	21
pallium	8.15e-10	21
regional part of cerebral cortex	4.96e-08	17

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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