Personal tools

MCL coexpression mm9:3050: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 6: Line 6:
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!1.32e-24!73;UBERON:0001016!2.96e-23!75;UBERON:0010314!7.42e-21!92;UBERON:0004121!1.61e-20!95;UBERON:0000924!1.61e-20!95;UBERON:0006601!1.61e-20!95;UBERON:0002346!1.28e-18!64;UBERON:0003075!1.28e-18!64;UBERON:0007284!1.28e-18!64;UBERON:0000073!9.43e-18!54;UBERON:0010371!9.53e-18!73;UBERON:0001049!1.04e-17!52;UBERON:0005068!1.04e-17!52;UBERON:0006241!1.04e-17!52;UBERON:0007135!1.04e-17!52;UBERON:0000955!2.12e-15!47;UBERON:0006238!2.12e-15!47;UBERON:0002616!1.20e-14!46;UBERON:0003080!2.72e-12!40;UBERON:0002780!1.02e-11!39;UBERON:0001890!1.02e-11!39;UBERON:0006240!1.02e-11!39;UBERON:0003056!1.37e-11!49;UBERON:0002020!2.24e-11!34;UBERON:0004111!8.96e-10!122;UBERON:0003528!5.84e-09!29;UBERON:0002791!5.84e-09!29;UBERON:0001893!5.84e-09!29;UBERON:0000025!9.64e-09!114;UBERON:0002410!8.12e-07!9
|ontology_enrichment_uberon=UBERON:0001017!1.32e-24!73;UBERON:0001016!2.96e-23!75;UBERON:0010314!7.42e-21!92;UBERON:0004121!1.61e-20!95;UBERON:0000924!1.61e-20!95;UBERON:0006601!1.61e-20!95;UBERON:0002346!1.28e-18!64;UBERON:0003075!1.28e-18!64;UBERON:0007284!1.28e-18!64;UBERON:0000073!9.43e-18!54;UBERON:0010371!9.53e-18!73;UBERON:0001049!1.04e-17!52;UBERON:0005068!1.04e-17!52;UBERON:0006241!1.04e-17!52;UBERON:0007135!1.04e-17!52;UBERON:0000955!2.12e-15!47;UBERON:0006238!2.12e-15!47;UBERON:0002616!1.20e-14!46;UBERON:0003080!2.72e-12!40;UBERON:0002780!1.02e-11!39;UBERON:0001890!1.02e-11!39;UBERON:0006240!1.02e-11!39;UBERON:0003056!1.37e-11!49;UBERON:0002020!2.24e-11!34;UBERON:0004111!8.96e-10!122;UBERON:0003528!5.84e-09!29;UBERON:0002791!5.84e-09!29;UBERON:0001893!5.84e-09!29;UBERON:0000025!9.64e-09!114;UBERON:0002410!8.12e-07!9
|tfbs_overrepresentation_for_novel_motifs=0.752782,0.193418,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,1.23467,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,3.52655,0.411696,0.608816,1.40558,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.261619,0.610669,0.156582,0.788421,1.05665,0.859154,1.23487,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,0.402065,0.411601,1.04436,1.20986,1.63704,0.476502,1.16055,1.00151,0.459035,1.32978,0.181575,0.568545,5.79199,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,0.464141,1.26539,1.05692,0.352122,2.37055,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,3.52346,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,11.6429,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,1.94219,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.135528
}}
}}

Revision as of 22:20, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:43503417..43503436,+p26@Zbtb20
Mm9::chr16:43503493..43503570,+p9@Zbtb20
Mm9::chr16:43506545..43506568,+p@chr16:43506545..43506568
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
central nervous system1.32e-2473
nervous system2.96e-2375
structure with developmental contribution from neural crest7.42e-2192
ectoderm-derived structure1.61e-2095
ectoderm1.61e-2095
presumptive ectoderm1.61e-2095
neurectoderm1.28e-1864
neural plate1.28e-1864
presumptive neural plate1.28e-1864
regional part of nervous system9.43e-1854
ecto-epithelium9.53e-1873
neural tube1.04e-1752
neural rod1.04e-1752
future spinal cord1.04e-1752
neural keel1.04e-1752
brain2.12e-1547
future brain2.12e-1547
regional part of brain1.20e-1446
anterior neural tube2.72e-1240
regional part of forebrain1.02e-1139
forebrain1.02e-1139
future forebrain1.02e-1139
pre-chordal neural plate1.37e-1149
gray matter2.24e-1134
anatomical conduit8.96e-10122
brain grey matter5.84e-0929
regional part of telencephalon5.84e-0929
telencephalon5.84e-0929
tube9.64e-09114
autonomic nervous system8.12e-079


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}