FFCP PHASE1:Mm9::chr13:100286621..100286632,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17755|HGNC=|MCL_coexpression_id=218|UniProt=P14873,Q3UF78,Q8CFR9,B2RQQ5|association_with_transcript=-64bp_to_ENSMUST00000064762,NM_008634,uc007rpr.2,uc007rpt.2_5end|description=CAGE_peak_3_at_Mtap1b_5end|id=chr13:100286621..100286632,-|ontology_enrichment_celltype=CL:0000540!7.62e-17!33;CL:0000047!7.62e-17!33;CL:0000031!7.62e-17!33;CL:0000404!7.62e-17!33;CL:0002319!2.80e-16!43;CL:0000221!6.68e-16!44;CL:0000133!6.68e-16!44;CL:0000117!2.52e-13!23;CL:0000337!2.52e-13!23;CL:0000393!3.13e-13!39;CL:0000211!3.13e-13!39;CL:0000055!1.67e-12!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.38e-17,33;CL:0000047,2.38e-17,33;CL:0000031,2.38e-17,33;CL:0000404,2.38e-17,33;CL:0002319,1.98e-16,43;CL:0000221,4.81e-16,44;CL:0000133,4.81e-16,44;CL:0000117,4.48e-14,23;CL:0000337,4.48e-14,23;CL:0000393,6.20e-13,39;CL:0000211,6.20e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.22e-29!75;UBERON:0001016!2.22e-29!75;UBERON:0001017!1.47e-28!73;UBERON:0005743!1.47e-28!73;UBERON:0004121!9.06e-27!102;UBERON:0000924!9.06e-27!102;UBERON:0006601!9.06e-27!102;UBERON:0002346!7.73e-25!71;UBERON:0003075!7.73e-25!71;UBERON:0007284!7.73e-25!71;UBERON:0001049!2.50e-20!52;UBERON:0005068!2.50e-20!52;UBERON:0006241!2.50e-20!52;UBERON:0007135!2.50e-20!52;UBERON:0000033!2.47e-19!63;UBERON:0000955!1.28e-18!50;UBERON:0006238!1.28e-18!50;UBERON:0002616!3.85e-18!49;UBERON:0003056!2.00e-17!49;UBERON:0002020!2.08e-15!34;UBERON:0003080!1.28e-14!40;UBERON:0002780!5.42e-14!39;UBERON:0001890!5.42e-14!39;UBERON:0006240!5.42e-14!39;UBERON:0002791!2.03e-12!29;UBERON:0003528!2.03e-12!29;UBERON:0001893!2.03e-12!29;UBERON:0000468!1.41e-08!333;UBERON:0007811!5.35e-08!86;UBERON:0000956!5.46e-08!21;UBERON:0001869!5.46e-08!21;UBERON:0000203!5.46e-08!21;UBERON:0000153!6.70e-08!94;UBERON:0000025!7.28e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.69e-30,75;UBERON:0001017,2.00e-29,73;UBERON:0002346,3.06e-26,64;UBERON:0003075,3.06e-26,64;UBERON:0007284,3.06e-26,64;UBERON:0004121,1.63e-25,95;UBERON:0000924,1.63e-25,95;UBERON:0006601,1.63e-25,95;UBERON:0000073,1.48e-22,54;UBERON:0010314,1.07e-21,92;UBERON:0001049,1.58e-21,52;UBERON:0005068,1.58e-21,52;UBERON:0006241,1.58e-21,52;UBERON:0007135,1.58e-21,52;UBERON:0010371,1.00e-19,73;UBERON:0003056,4.45e-18,49;UBERON:0000955,5.88e-18,47;UBERON:0006238,5.88e-18,47;UBERON:0002616,1.85e-17,46;UBERON:0002020,2.71e-16,34;UBERON:0003080,1.88e-15,40;UBERON:0002780,8.72e-15,39;UBERON:0001890,8.72e-15,39;UBERON:0006240,8.72e-15,39;UBERON:0003528,4.11e-13,29;UBERON:0002791,4.11e-13,29;UBERON:0001893,4.11e-13,29;UBERON:0000956,2.12e-08,21;UBERON:0001869,2.12e-08,21;UBERON:0000203,2.12e-08,21;UBERON:0002619,4.75e-07,17;UBERON:0003076,7.92e-07,12;UBERON:0003057,7.92e-07,12|phase1_expression=0.960893082628764,0,0.909998478779072,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,2.55129870453209,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.377690453926732,0.304130793658544,0.183546752161682,3.9119567217402,2.61630187656536,1.97717564461025,1.55543919259427,1.95980990275508,2.87505128729943,0,0,0,0.771778308107841,2.57880095944881,1.03134418455488,19.4223802425214,20.1016572123373,13.3104594736298,2.03306719241479,0.889294796111139,0,0.988866362566974,0,0.898800331555214,3.07374644257244,6.32506635081714,3.37514845829227,6.52007380189284,11.7116903605559,6.84692476950002,6.98197555525238,5.65488279007595,6.43453150627015,6.60695285996332,7.53355294702608,13.5173749265494,17.672762555846,20.2187692361325,15.6274011167028,12.2840519560608,9.56696437053856,9.0150966188318,16.4992007865254,15.9456282494995,11.183966749518,3.40767869999328,9.8998743739889,1.44932244350839,0,0.679971333707751,0,0,0,2.38755514223978,1.02258193546835,0,1.06001872353102,1.26759077799012,0,5.09610479413291,0,0,0,1.01104889002957,0.79928715803342,0.258937883647172,2.22663208597237,2.77576522825817,2.74018930480927,1.84492397804847,4.06951129492081,4.8211369925639,0.628332956648377,0.494389935468748,3.90418263683761,0,1.7794353494215,0.220841518460394,0.484875253135222,1.86391761218122,4.09893115816166,4.1889341362691,0.510914110417183,0,0.599902730993408,0,13.481157546434,5.94750783664214,7.91622418311046,7.12679712788333,6.90431734791892,10.389402227978,12.4925772562173,2.44414473240759,1.49288364732112,6.31806896084187,0.841767423545896,7.54698569183682,11.4951052216736,12.4242869565691,6.63101198477146,6.53150391852747,6.66191345481219,5.71580519814346,2.06962696591213,1.5089759505299,3.40390944302075,2.63926686245923,2.41115305670332,1.11218899690239,3.48252166522167,1.4404749548556,1.59227413454795,0,0,0,3.93538967817454,3.75241695969754,2.88099298337624,5.44512891845984,3.14822770795846,2.46827380619805,2.79040733700489,1.3413670069981,1.63471479314037,2.13927804887525,1.14917224855367,1.37816976227955,1.02339991197733,1.53685080703735,0.536825675041487,5.25724871410318,15.2298826321341,0,0,3.83918850963421,1.857893374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| ||
|EntrezGene=17755 | |||
|HGNC= | |||
|MCL_coexpression_id=218 | |||
|UniProt=P14873,Q3UF78,Q8CFR9,B2RQQ5 | |||
|association_with_transcript=-64bp_to_ENSMUST00000064762,NM_008634,uc007rpr.2,uc007rpt.2_5end | |||
|description=CAGE_peak_3_at_Mtap1b_5end | |||
|id=chr13:100286621..100286632,- | |||
|ontology_enrichment_celltype=CL:0000540!7.62e-17!33;CL:0000047!7.62e-17!33;CL:0000031!7.62e-17!33;CL:0000404!7.62e-17!33;CL:0002319!2.80e-16!43;CL:0000221!6.68e-16!44;CL:0000133!6.68e-16!44;CL:0000117!2.52e-13!23;CL:0000337!2.52e-13!23;CL:0000393!3.13e-13!39;CL:0000211!3.13e-13!39;CL:0000055!1.67e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.38e-17,33;CL:0000047,2.38e-17,33;CL:0000031,2.38e-17,33;CL:0000404,2.38e-17,33;CL:0002319,1.98e-16,43;CL:0000221,4.81e-16,44;CL:0000133,4.81e-16,44;CL:0000117,4.48e-14,23;CL:0000337,4.48e-14,23;CL:0000393,6.20e-13,39;CL:0000211,6.20e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.22e-29!75;UBERON:0001016!2.22e-29!75;UBERON:0001017!1.47e-28!73;UBERON:0005743!1.47e-28!73;UBERON:0004121!9.06e-27!102;UBERON:0000924!9.06e-27!102;UBERON:0006601!9.06e-27!102;UBERON:0002346!7.73e-25!71;UBERON:0003075!7.73e-25!71;UBERON:0007284!7.73e-25!71;UBERON:0001049!2.50e-20!52;UBERON:0005068!2.50e-20!52;UBERON:0006241!2.50e-20!52;UBERON:0007135!2.50e-20!52;UBERON:0000033!2.47e-19!63;UBERON:0000955!1.28e-18!50;UBERON:0006238!1.28e-18!50;UBERON:0002616!3.85e-18!49;UBERON:0003056!2.00e-17!49;UBERON:0002020!2.08e-15!34;UBERON:0003080!1.28e-14!40;UBERON:0002780!5.42e-14!39;UBERON:0001890!5.42e-14!39;UBERON:0006240!5.42e-14!39;UBERON:0002791!2.03e-12!29;UBERON:0003528!2.03e-12!29;UBERON:0001893!2.03e-12!29;UBERON:0000468!1.41e-08!333;UBERON:0007811!5.35e-08!86;UBERON:0000956!5.46e-08!21;UBERON:0001869!5.46e-08!21;UBERON:0000203!5.46e-08!21;UBERON:0000153!6.70e-08!94;UBERON:0000025!7.28e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.69e-30,75;UBERON:0001017,2.00e-29,73;UBERON:0002346,3.06e-26,64;UBERON:0003075,3.06e-26,64;UBERON:0007284,3.06e-26,64;UBERON:0004121,1.63e-25,95;UBERON:0000924,1.63e-25,95;UBERON:0006601,1.63e-25,95;UBERON:0000073,1.48e-22,54;UBERON:0010314,1.07e-21,92;UBERON:0001049,1.58e-21,52;UBERON:0005068,1.58e-21,52;UBERON:0006241,1.58e-21,52;UBERON:0007135,1.58e-21,52;UBERON:0010371,1.00e-19,73;UBERON:0003056,4.45e-18,49;UBERON:0000955,5.88e-18,47;UBERON:0006238,5.88e-18,47;UBERON:0002616,1.85e-17,46;UBERON:0002020,2.71e-16,34;UBERON:0003080,1.88e-15,40;UBERON:0002780,8.72e-15,39;UBERON:0001890,8.72e-15,39;UBERON:0006240,8.72e-15,39;UBERON:0003528,4.11e-13,29;UBERON:0002791,4.11e-13,29;UBERON:0001893,4.11e-13,29;UBERON:0000956,2.12e-08,21;UBERON:0001869,2.12e-08,21;UBERON:0000203,2.12e-08,21;UBERON:0002619,4.75e-07,17;UBERON:0003076,7.92e-07,12;UBERON:0003057,7.92e-07,12 | |||
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| |||
|short_description=p3@Mtap1b | |||
}} |
Revision as of 23:42, 12 September 2013
Short description: | p3@Mtap1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Mtap1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:218 |
Association with transcript: | -64bp_to_ENSMUST00000064762, NM_008634, uc007rpr.2, uc007rpt.2_5end |
EntrezGene: | Mtap1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.38e-17 | 33 |
neuronal stem cell | 2.38e-17 | 33 |
neuroblast | 2.38e-17 | 33 |
electrically signaling cell | 2.38e-17 | 33 |
neural cell | 1.98e-16 | 43 |
ectodermal cell | 4.81e-16 | 44 |
neurectodermal cell | 4.81e-16 | 44 |
CNS neuron (sensu Vertebrata) | 4.48e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.48e-14 | 23 |
electrically responsive cell | 6.20e-13 | 39 |
electrically active cell | 6.20e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.69e-30 | 75 |
central nervous system | 2.00e-29 | 73 |
neurectoderm | 3.06e-26 | 64 |
neural plate | 3.06e-26 | 64 |
presumptive neural plate | 3.06e-26 | 64 |
ectoderm-derived structure | 1.63e-25 | 95 |
ectoderm | 1.63e-25 | 95 |
presumptive ectoderm | 1.63e-25 | 95 |
regional part of nervous system | 1.48e-22 | 54 |
structure with developmental contribution from neural crest | 1.07e-21 | 92 |
neural tube | 1.58e-21 | 52 |
neural rod | 1.58e-21 | 52 |
future spinal cord | 1.58e-21 | 52 |
neural keel | 1.58e-21 | 52 |
ecto-epithelium | 1.00e-19 | 73 |
pre-chordal neural plate | 4.45e-18 | 49 |
brain | 5.88e-18 | 47 |
future brain | 5.88e-18 | 47 |
regional part of brain | 1.85e-17 | 46 |
gray matter | 2.71e-16 | 34 |
anterior neural tube | 1.88e-15 | 40 |
regional part of forebrain | 8.72e-15 | 39 |
forebrain | 8.72e-15 | 39 |
future forebrain | 8.72e-15 | 39 |
brain grey matter | 4.11e-13 | 29 |
regional part of telencephalon | 4.11e-13 | 29 |
telencephalon | 4.11e-13 | 29 |
cerebral cortex | 2.12e-08 | 21 |
cerebral hemisphere | 2.12e-08 | 21 |
pallium | 2.12e-08 | 21 |
regional part of cerebral cortex | 4.75e-07 | 17 |
posterior neural tube | 7.92e-07 | 12 |
chordal neural plate | 7.92e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.