FFCP PHASE1:Mm9::chr8:4166556..4166593,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=213027|HGNC=|MCL_coexpression_id=60|UniProt=E9Q4E1|association_with_transcript=0bp_to_ENSMUST00000086778,NM_001039578,uc009kta.1,uc009ktb.2,uc009ktc.1_5end|description=CAGE_peak_1_at_Evi5l_5end|id=chr8:4166556..4166593,+|ontology_enrichment_celltype=CL:0000540!2.29e-17!33;CL:0000047!2.29e-17!33;CL:0000031!2.29e-17!33;CL:0000404!2.29e-17!33;CL:0002319!8.75e-17!43;CL:0000221!1.15e-16!44;CL:0000133!1.15e-16!44;CL:0000117!2.98e-14!23;CL:0000337!2.98e-14!23;CL:0000393!5.70e-14!39;CL:0000211!5.70e-14!39;CL:0000055!3.08e-13!50|ontology_enrichment_celltype_v019_2=CL:0000540,2.29e-17,33;CL:0000047,2.29e-17,33;CL:0000031,2.29e-17,33;CL:0000404,2.29e-17,33;CL:0002319,8.75e-17,43;CL:0000221,1.15e-16,44;CL:0000133,1.15e-16,44;CL:0000117,2.98e-14,23;CL:0000337,2.98e-14,23;CL:0000393,5.70e-14,39;CL:0000211,5.70e-14,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.36e-32!73;UBERON:0005743!1.36e-32!73;UBERON:0000073!7.23e-32!75;UBERON:0001016!7.23e-32!75;UBERON:0004121!5.83e-31!102;UBERON:0000924!5.83e-31!102;UBERON:0006601!5.83e-31!102;UBERON:0002346!5.08e-24!71;UBERON:0003075!5.08e-24!71;UBERON:0007284!5.08e-24!71;UBERON:0001049!3.38e-23!52;UBERON:0005068!3.38e-23!52;UBERON:0006241!3.38e-23!52;UBERON:0007135!3.38e-23!52;UBERON:0000955!2.92e-21!50;UBERON:0006238!2.92e-21!50;UBERON:0000033!6.83e-21!63;UBERON:0002616!9.75e-21!49;UBERON:0002020!2.18e-18!34;UBERON:0003056!2.70e-17!49;UBERON:0003080!2.86e-17!40;UBERON:0002780!1.19e-16!39;UBERON:0001890!1.19e-16!39;UBERON:0006240!1.19e-16!39;UBERON:0000153!8.61e-16!94;UBERON:0007811!2.05e-15!86;UBERON:0002791!4.77e-15!29;UBERON:0003528!4.77e-15!29;UBERON:0001893!4.77e-15!29;UBERON:0000956!3.07e-10!21;UBERON:0001869!3.07e-10!21;UBERON:0000203!3.07e-10!21;UBERON:0002619!1.57e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.36e-32,73;UBERON:0001016,7.22e-32,75;UBERON:0004121,4.99e-31,95;UBERON:0000924,4.99e-31,95;UBERON:0006601,4.99e-31,95;UBERON:0002346,1.51e-24,64;UBERON:0003075,1.51e-24,64;UBERON:0007284,1.51e-24,64;UBERON:0010371,1.89e-24,73;UBERON:0000073,3.10e-24,54;UBERON:0001049,3.38e-23,52;UBERON:0005068,3.38e-23,52;UBERON:0006241,3.38e-23,52;UBERON:0007135,3.38e-23,52;UBERON:0000955,1.37e-19,47;UBERON:0006238,1.37e-19,47;UBERON:0002616,4.48e-19,46;UBERON:0010314,1.22e-18,92;UBERON:0002020,2.18e-18,34;UBERON:0003056,2.70e-17,49;UBERON:0003080,2.85e-17,40;UBERON:0002780,1.19e-16,39;UBERON:0001890,1.19e-16,39;UBERON:0006240,1.19e-16,39;UBERON:0003528,4.77e-15,29;UBERON:0002791,4.77e-15,29;UBERON:0001893,4.77e-15,29;UBERON:0000956,3.07e-10,21;UBERON:0001869,3.07e-10,21;UBERON:0000203,3.07e-10,21;UBERON:0002619,1.57e-08,17|phase1_expression=17.7765220286321,0.697950815278722,2.27499619694768,1.20985684522732,1.00179145989269,2.51818907867835,2.10251376535973,7.10178278928669,2.39340827657833,1.87251621057595,0.68487187290202,0.638177271962691,6.33442700745461,6.90621179110079,3.33109761815663,6.2767332890846,2.79824751251259,9.46386496074713,7.67840828192137,6.79023442876848,30.0202814233276,4.76596565764249,3.6567970479451,1.59992422793407,3.21172993494038,0.57423196411502,2.15380998079537,1.939241094173,2.47030445293286,3.78045194639896,3.76941868114018,1.90509202037889,1.84519436275371,0,2.02196133825892,1.16364251750945,2.04169356262369,6.27797446105362,4.6880120671428,3.66466620781659,8.2352408324342,10.9287277593351,8.73918635456076,7.55380907853464,8.81979301609777,7.34187008646726,19.559783608701,9.15705656797875,20.4308149943059,13.6100929351998,13.2987100544094,15.8127820801469,5.03347818173209,5.80289713609076,2.35265659399725,11.5766746216176,13.4670716771216,12.3761302146586,46.7351024585671,51.8411159686592,49.438849473482,12.876092218627,14.2287167377782,8.99899717281399,8.89979726310277,9.2362414942993,29.3608108308037,31.1216827310459,32.1437798156281,32.2664192612741,30.9177693186532,60.2723577092026,60.5179802207421,34.0524421817572,36.8046608710028,35.8495326777908,26.4278114398533,45.584379696412,43.4706489115169,59.216943190857,57.4542401823133,52.091337055676,37.1313388671837,38.8306200921859,45.2282813419358,56.2740598254705,44.8470794517174,46.7862609021504,8.85996461998253,15.7188845022114,11.8844440367688,4.30211938490693,2.03991400112325,3.77792234146472,4.54843492213368,0.448026887097336,12.7804422319894,11.2484012901518,13.2490862347463,17.3136391510067,13.8026551381147,16.6824420638613,33.1246811618639,28.4426681261332,1.73192832808971,1.26679932737549,0.505524445014783,8.33542321949138,9.32176381129818,21.2272258862699,12.6644288539279,11.2652226975492,13.8369298353635,13.2635923686308,12.346814249249,16.4623234641875,7.66304399976559,16.4843266888699,4.42305275974937,12.6178142958979,10.1587098491781,6.78825354389311,3.72783522436244,25.7647101370161,39.585427587743,3.0654846625031,3.83408398418945,2.39961092397363,5.59108999121485,46.435098215495,33.3975440057597,64.7119913381252,31.9836749153789,41.9373350021742,45.2977937139841,48.6723789203273,16.09061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| ||
|EntrezGene=213027 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=E9Q4E1 | |||
|association_with_transcript=0bp_to_ENSMUST00000086778,NM_001039578,uc009kta.1,uc009ktb.2,uc009ktc.1_5end | |||
|description=CAGE_peak_1_at_Evi5l_5end | |||
|id=chr8:4166556..4166593,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.29e-17!33;CL:0000047!2.29e-17!33;CL:0000031!2.29e-17!33;CL:0000404!2.29e-17!33;CL:0002319!8.75e-17!43;CL:0000221!1.15e-16!44;CL:0000133!1.15e-16!44;CL:0000117!2.98e-14!23;CL:0000337!2.98e-14!23;CL:0000393!5.70e-14!39;CL:0000211!5.70e-14!39;CL:0000055!3.08e-13!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.29e-17,33;CL:0000047,2.29e-17,33;CL:0000031,2.29e-17,33;CL:0000404,2.29e-17,33;CL:0002319,8.75e-17,43;CL:0000221,1.15e-16,44;CL:0000133,1.15e-16,44;CL:0000117,2.98e-14,23;CL:0000337,2.98e-14,23;CL:0000393,5.70e-14,39;CL:0000211,5.70e-14,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.36e-32!73;UBERON:0005743!1.36e-32!73;UBERON:0000073!7.23e-32!75;UBERON:0001016!7.23e-32!75;UBERON:0004121!5.83e-31!102;UBERON:0000924!5.83e-31!102;UBERON:0006601!5.83e-31!102;UBERON:0002346!5.08e-24!71;UBERON:0003075!5.08e-24!71;UBERON:0007284!5.08e-24!71;UBERON:0001049!3.38e-23!52;UBERON:0005068!3.38e-23!52;UBERON:0006241!3.38e-23!52;UBERON:0007135!3.38e-23!52;UBERON:0000955!2.92e-21!50;UBERON:0006238!2.92e-21!50;UBERON:0000033!6.83e-21!63;UBERON:0002616!9.75e-21!49;UBERON:0002020!2.18e-18!34;UBERON:0003056!2.70e-17!49;UBERON:0003080!2.86e-17!40;UBERON:0002780!1.19e-16!39;UBERON:0001890!1.19e-16!39;UBERON:0006240!1.19e-16!39;UBERON:0000153!8.61e-16!94;UBERON:0007811!2.05e-15!86;UBERON:0002791!4.77e-15!29;UBERON:0003528!4.77e-15!29;UBERON:0001893!4.77e-15!29;UBERON:0000956!3.07e-10!21;UBERON:0001869!3.07e-10!21;UBERON:0000203!3.07e-10!21;UBERON:0002619!1.57e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.36e-32,73;UBERON:0001016,7.22e-32,75;UBERON:0004121,4.99e-31,95;UBERON:0000924,4.99e-31,95;UBERON:0006601,4.99e-31,95;UBERON:0002346,1.51e-24,64;UBERON:0003075,1.51e-24,64;UBERON:0007284,1.51e-24,64;UBERON:0010371,1.89e-24,73;UBERON:0000073,3.10e-24,54;UBERON:0001049,3.38e-23,52;UBERON:0005068,3.38e-23,52;UBERON:0006241,3.38e-23,52;UBERON:0007135,3.38e-23,52;UBERON:0000955,1.37e-19,47;UBERON:0006238,1.37e-19,47;UBERON:0002616,4.48e-19,46;UBERON:0010314,1.22e-18,92;UBERON:0002020,2.18e-18,34;UBERON:0003056,2.70e-17,49;UBERON:0003080,2.85e-17,40;UBERON:0002780,1.19e-16,39;UBERON:0001890,1.19e-16,39;UBERON:0006240,1.19e-16,39;UBERON:0003528,4.77e-15,29;UBERON:0002791,4.77e-15,29;UBERON:0001893,4.77e-15,29;UBERON:0000956,3.07e-10,21;UBERON:0001869,3.07e-10,21;UBERON:0000203,3.07e-10,21;UBERON:0002619,1.57e-08,17 | |||
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| |||
|short_description=p1@Evi5l | |||
}} |
Revision as of 15:37, 14 September 2013
Short description: | p1@Evi5l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Evi5l_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000086778, NM_001039578, uc009kta.1, uc009ktb.2, uc009ktc.1_5end |
EntrezGene: | Evi5l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.29e-17 | 33 |
neuronal stem cell | 2.29e-17 | 33 |
neuroblast | 2.29e-17 | 33 |
electrically signaling cell | 2.29e-17 | 33 |
neural cell | 8.75e-17 | 43 |
ectodermal cell | 1.15e-16 | 44 |
neurectodermal cell | 1.15e-16 | 44 |
CNS neuron (sensu Vertebrata) | 2.98e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.98e-14 | 23 |
electrically responsive cell | 5.70e-14 | 39 |
electrically active cell | 5.70e-14 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.36e-32 | 73 |
nervous system | 7.22e-32 | 75 |
ectoderm-derived structure | 4.99e-31 | 95 |
ectoderm | 4.99e-31 | 95 |
presumptive ectoderm | 4.99e-31 | 95 |
neurectoderm | 1.51e-24 | 64 |
neural plate | 1.51e-24 | 64 |
presumptive neural plate | 1.51e-24 | 64 |
ecto-epithelium | 1.89e-24 | 73 |
regional part of nervous system | 3.10e-24 | 54 |
neural tube | 3.38e-23 | 52 |
neural rod | 3.38e-23 | 52 |
future spinal cord | 3.38e-23 | 52 |
neural keel | 3.38e-23 | 52 |
brain | 1.37e-19 | 47 |
future brain | 1.37e-19 | 47 |
regional part of brain | 4.48e-19 | 46 |
structure with developmental contribution from neural crest | 1.22e-18 | 92 |
gray matter | 2.18e-18 | 34 |
pre-chordal neural plate | 2.70e-17 | 49 |
anterior neural tube | 2.85e-17 | 40 |
regional part of forebrain | 1.19e-16 | 39 |
forebrain | 1.19e-16 | 39 |
future forebrain | 1.19e-16 | 39 |
brain grey matter | 4.77e-15 | 29 |
regional part of telencephalon | 4.77e-15 | 29 |
telencephalon | 4.77e-15 | 29 |
cerebral cortex | 3.07e-10 | 21 |
cerebral hemisphere | 3.07e-10 | 21 |
pallium | 3.07e-10 | 21 |
regional part of cerebral cortex | 1.57e-08 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.