FFCP PHASE1:Mm9::chr19:16207302..16207400,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14682|HGNC=|UniProt=P21279,Q3UHH5|association_with_transcript=0bp_to_ENSMUST00000025541,NM_008139,uc008gwt.1_5end|description=CAGE_peak_2_at_Gnaq_5end|id=chr19:16207302..16207400,+|ontology_enrichment_celltype=CL:0000540!1.57e-13!33;CL:0000047!1.57e-13!33;CL:0000031!1.57e-13!33;CL:0000404!1.57e-13!33;CL:0000393!1.02e-11!39;CL:0000211!1.02e-11!39;CL:0002319!6.30e-10!43;CL:0000221!7.63e-10!44;CL:0000133!7.63e-10!44;CL:0000055!8.34e-09!50;CL:0000117!9.55e-09!23;CL:0000337!9.55e-09!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.56e-13,33;CL:0000047,1.56e-13,33;CL:0000031,1.56e-13,33;CL:0000404,1.56e-13,33;CL:0000393,1.01e-11,39;CL:0000211,1.01e-11,39;CL:0002319,6.61e-10,43;CL:0000221,8.00e-10,44;CL:0000133,8.00e-10,44;CL:0000117,9.50e-09,23;CL:0000337,9.50e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.03e-19!73;UBERON:0005743!9.03e-19!73;UBERON:0000073!1.20e-18!75;UBERON:0001016!1.20e-18!75;UBERON:0004121!6.74e-16!102;UBERON:0000924!6.74e-16!102;UBERON:0006601!6.74e-16!102;UBERON:0002346!2.19e-14!71;UBERON:0003075!2.19e-14!71;UBERON:0007284!2.19e-14!71;UBERON:0002020!1.69e-13!34;UBERON:0001049!5.98e-13!52;UBERON:0005068!5.98e-13!52;UBERON:0006241!5.98e-13!52;UBERON:0007135!5.98e-13!52;UBERON:0000955!1.12e-10!50;UBERON:0006238!1.12e-10!50;UBERON:0002791!1.44e-10!29;UBERON:0003528!1.44e-10!29;UBERON:0001893!1.44e-10!29;UBERON:0000033!1.85e-10!63;UBERON:0002616!2.65e-10!49;UBERON:0003056!3.32e-10!49;UBERON:0003080!7.42e-10!40;UBERON:0002780!1.25e-09!39;UBERON:0001890!1.25e-09!39;UBERON:0006240!1.25e-09!39;UBERON:0000025!3.60e-08!114;UBERON:0004111!1.25e-07!122;UBERON:0000956!1.28e-07!21;UBERON:0001869!1.28e-07!21;UBERON:0000203!1.28e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.48e-19,73;UBERON:0001016,1.26e-18,75;UBERON:0004121,5.87e-16,95;UBERON:0000924,5.87e-16,95;UBERON:0006601,5.87e-16,95;UBERON:0002346,8.99e-15,64;UBERON:0003075,8.99e-15,64;UBERON:0007284,8.99e-15,64;UBERON:0002020,1.68e-13,34;UBERON:0010371,4.14e-13,73;UBERON:0000073,5.87e-13,54;UBERON:0001049,6.28e-13,52;UBERON:0005068,6.28e-13,52;UBERON:0006241,6.28e-13,52;UBERON:0007135,6.28e-13,52;UBERON:0010314,8.90e-11,92;UBERON:0003528,1.43e-10,29;UBERON:0002791,1.43e-10,29;UBERON:0001893,1.43e-10,29;UBERON:0000955,3.14e-10,47;UBERON:0006238,3.14e-10,47;UBERON:0003056,3.29e-10,49;UBERON:0003080,7.37e-10,40;UBERON:0002616,7.38e-10,46;UBERON:0002780,1.24e-09,39;UBERON:0001890,1.24e-09,39;UBERON:0006240,1.24e-09,39;UBERON:0000025,3.71e-08,114;UBERON:0000956,1.28e-07,21;UBERON:0001869,1.28e-07,21;UBERON:0000203,1.28e-07,21;UBERON:0004111,1.29e-07,122|phase1_expression=13.1322054625931,0.697950815278722,1.36499771816861,1.51232105653415,2.00358291978539,2.68606835059024,3.50418960893289,1.67860320474049,0.84473233291,0.70219357896598,0.513653904676515,0.957265907944037,0.171200729931206,0,0.999329285446988,1.82227740650843,0.699561878128147,2.36596624018678,2.33094537129756,2.97072756258621,8.75945888556019,1.78723712161594,2.61199789138935,0.799962113967033,0.68822784320151,1.14846392823004,1.29228598847722,1.29282739611533,0.760093677825496,0.756090389279792,0.221730510655305,5.71527606113668,1.84519436275371,15.8481681015439,0.288851619751275,0,0.204169356262369,1.25559489221072,0,1.57057123192139,1.17646297606203,0.683045484958446,0.971020706062307,12.9673722514845,11.4555932278051,8.25960384727567,0.782391344348039,10.247182349881,10.9843091367236,8.36048566019419,4.05960622713551,4.31257693094915,2.68452169692378,0.725362142011344,0,7.20326420900652,2.29226751951005,5.15672092277442,26.7057728334669,29.6234948392338,31.0577387718028,3.38844532069132,4.4464739805557,7.19919773825119,1.97773272513395,4.9733608046227,5.39280198933128,6.53171119046643,16.279269132431,12.2855403881839,13.4607975264884,17.7103610330358,21.4242484723065,11.6366259254206,12.4599112323707,7.35375029288017,9.91042928994498,12.6410464704336,12.9029487935245,27.5642341356105,29.1845583091687,21.3574481928272,8.37548997004143,13.5063026407603,14.9742282821274,30.0521157183141,32.8878582645928,30.5695091153493,10.8288456466453,8.01058537131927,24.0587525622393,8.60423876981386,7.47968467078526,2.15881276655127,2.59910566979068,1.79210754838934,3.23022166303029,11.759692257886,10.1316541795119,12.3668851078619,9.29566570526091,23.0987659345772,38.2207859559969,21.3320010945999,1.5154372870785,1.52015919285059,1.01104889002957,4.22480354960522,1.8125651855302,7.27366481417641,12.8379141806941,9.13396434936424,9.4552353874984,7.988299949289,11.4061045921634,7.28866229712118,4.94389935468748,7.22996784599558,4.42305275974937,10.3530783966342,5.30019644304944,3.39412677194655,3.72783522436244,12.5895742714965,12.5668024088073,1.27728527604296,2.87556298814209,4.19931911695385,2.1601938602421,12.8819949888148,17.3850229071078,19.6020789296068,17.0347833788431,26.8501230196847,13.0906468072523,14.2772311499627,20.6733908616142,6.22034853050465,6.06534620240819,3.99839526184301,7.5469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| ||
|EntrezGene=14682 | |||
|HGNC= | |||
|UniProt=P21279,Q3UHH5 | |||
|association_with_transcript=0bp_to_ENSMUST00000025541,NM_008139,uc008gwt.1_5end | |||
|description=CAGE_peak_2_at_Gnaq_5end | |||
|id=chr19:16207302..16207400,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.57e-13!33;CL:0000047!1.57e-13!33;CL:0000031!1.57e-13!33;CL:0000404!1.57e-13!33;CL:0000393!1.02e-11!39;CL:0000211!1.02e-11!39;CL:0002319!6.30e-10!43;CL:0000221!7.63e-10!44;CL:0000133!7.63e-10!44;CL:0000055!8.34e-09!50;CL:0000117!9.55e-09!23;CL:0000337!9.55e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.56e-13,33;CL:0000047,1.56e-13,33;CL:0000031,1.56e-13,33;CL:0000404,1.56e-13,33;CL:0000393,1.01e-11,39;CL:0000211,1.01e-11,39;CL:0002319,6.61e-10,43;CL:0000221,8.00e-10,44;CL:0000133,8.00e-10,44;CL:0000117,9.50e-09,23;CL:0000337,9.50e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.03e-19!73;UBERON:0005743!9.03e-19!73;UBERON:0000073!1.20e-18!75;UBERON:0001016!1.20e-18!75;UBERON:0004121!6.74e-16!102;UBERON:0000924!6.74e-16!102;UBERON:0006601!6.74e-16!102;UBERON:0002346!2.19e-14!71;UBERON:0003075!2.19e-14!71;UBERON:0007284!2.19e-14!71;UBERON:0002020!1.69e-13!34;UBERON:0001049!5.98e-13!52;UBERON:0005068!5.98e-13!52;UBERON:0006241!5.98e-13!52;UBERON:0007135!5.98e-13!52;UBERON:0000955!1.12e-10!50;UBERON:0006238!1.12e-10!50;UBERON:0002791!1.44e-10!29;UBERON:0003528!1.44e-10!29;UBERON:0001893!1.44e-10!29;UBERON:0000033!1.85e-10!63;UBERON:0002616!2.65e-10!49;UBERON:0003056!3.32e-10!49;UBERON:0003080!7.42e-10!40;UBERON:0002780!1.25e-09!39;UBERON:0001890!1.25e-09!39;UBERON:0006240!1.25e-09!39;UBERON:0000025!3.60e-08!114;UBERON:0004111!1.25e-07!122;UBERON:0000956!1.28e-07!21;UBERON:0001869!1.28e-07!21;UBERON:0000203!1.28e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.48e-19,73;UBERON:0001016,1.26e-18,75;UBERON:0004121,5.87e-16,95;UBERON:0000924,5.87e-16,95;UBERON:0006601,5.87e-16,95;UBERON:0002346,8.99e-15,64;UBERON:0003075,8.99e-15,64;UBERON:0007284,8.99e-15,64;UBERON:0002020,1.68e-13,34;UBERON:0010371,4.14e-13,73;UBERON:0000073,5.87e-13,54;UBERON:0001049,6.28e-13,52;UBERON:0005068,6.28e-13,52;UBERON:0006241,6.28e-13,52;UBERON:0007135,6.28e-13,52;UBERON:0010314,8.90e-11,92;UBERON:0003528,1.43e-10,29;UBERON:0002791,1.43e-10,29;UBERON:0001893,1.43e-10,29;UBERON:0000955,3.14e-10,47;UBERON:0006238,3.14e-10,47;UBERON:0003056,3.29e-10,49;UBERON:0003080,7.37e-10,40;UBERON:0002616,7.38e-10,46;UBERON:0002780,1.24e-09,39;UBERON:0001890,1.24e-09,39;UBERON:0006240,1.24e-09,39;UBERON:0000025,3.71e-08,114;UBERON:0000956,1.28e-07,21;UBERON:0001869,1.28e-07,21;UBERON:0000203,1.28e-07,21;UBERON:0004111,1.29e-07,122 | |||
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| |||
|short_description=p2@Gnaq | |||
}} |
Revision as of 17:06, 13 September 2013
Short description: | p2@Gnaq |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gnaq_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000025541, NM_008139, uc008gwt.1_5end |
EntrezGene: | Gnaq |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.56e-13 | 33 |
neuronal stem cell | 1.56e-13 | 33 |
neuroblast | 1.56e-13 | 33 |
electrically signaling cell | 1.56e-13 | 33 |
electrically responsive cell | 1.01e-11 | 39 |
electrically active cell | 1.01e-11 | 39 |
neural cell | 6.61e-10 | 43 |
ectodermal cell | 8.00e-10 | 44 |
neurectodermal cell | 8.00e-10 | 44 |
CNS neuron (sensu Vertebrata) | 9.50e-09 | 23 |
neuroblast (sensu Vertebrata) | 9.50e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.48e-19 | 73 |
nervous system | 1.26e-18 | 75 |
ectoderm-derived structure | 5.87e-16 | 95 |
ectoderm | 5.87e-16 | 95 |
presumptive ectoderm | 5.87e-16 | 95 |
neurectoderm | 8.99e-15 | 64 |
neural plate | 8.99e-15 | 64 |
presumptive neural plate | 8.99e-15 | 64 |
gray matter | 1.68e-13 | 34 |
ecto-epithelium | 4.14e-13 | 73 |
regional part of nervous system | 5.87e-13 | 54 |
neural tube | 6.28e-13 | 52 |
neural rod | 6.28e-13 | 52 |
future spinal cord | 6.28e-13 | 52 |
neural keel | 6.28e-13 | 52 |
structure with developmental contribution from neural crest | 8.90e-11 | 92 |
brain grey matter | 1.43e-10 | 29 |
regional part of telencephalon | 1.43e-10 | 29 |
telencephalon | 1.43e-10 | 29 |
brain | 3.14e-10 | 47 |
future brain | 3.14e-10 | 47 |
pre-chordal neural plate | 3.29e-10 | 49 |
anterior neural tube | 7.37e-10 | 40 |
regional part of brain | 7.38e-10 | 46 |
regional part of forebrain | 1.24e-09 | 39 |
forebrain | 1.24e-09 | 39 |
future forebrain | 1.24e-09 | 39 |
tube | 3.71e-08 | 114 |
cerebral cortex | 1.28e-07 | 21 |
cerebral hemisphere | 1.28e-07 | 21 |
pallium | 1.28e-07 | 21 |
anatomical conduit | 1.29e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.