FFCP PHASE1:Mm9::chr1:60828457..60828460,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=651|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:60828457..60828460,+|id=chr1:60828457..60828460,+|ontology_enrichment_celltype=CL:0000791!7.38e-21!9;CL:0000789!7.38e-21!9;CL:0002420!7.38e-21!9;CL:0002419!7.38e-21!9;CL:0000790!7.38e-21!9;CL:0000084!2.32e-20!11;CL:0000827!2.32e-20!11;CL:0000838!1.76e-18!12;CL:0000624!1.83e-18!8;CL:0000542!6.89e-17!13;CL:0000051!6.89e-17!13;CL:0000893!2.44e-14!6;CL:0002489!2.44e-14!6;CL:0000898!2.44e-14!6;CL:0000809!2.44e-14!6;CL:0000810!2.44e-14!6;CL:0000895!2.44e-14!6;CL:0000808!2.44e-14!6;CL:0000894!2.44e-14!6;CL:0000806!2.44e-14!6;CL:0000807!2.44e-14!6;CL:0000805!2.44e-14!6;CL:0002425!2.44e-14!6;CL:0002436!2.44e-14!6;CL:0002427!2.44e-14!6;CL:0002428!2.44e-14!6;CL:0002429!2.44e-14!6;CL:0002433!2.44e-14!6;CL:0002431!2.44e-14!6;CL:0002432!2.44e-14!6;CL:0000738!2.13e-12!17;CL:0002087!2.13e-12!17;CL:0000988!4.54e-08!32;CL:0002032!4.54e-08!32;CL:0000037!4.54e-08!32;CL:0000566!4.54e-08!32;CL:0000837!4.54e-08!32;CL:0002031!9.45e-08!25|ontology_enrichment_celltype_v019_2=CL:0000791,9.65e-25,9;CL:0000789,9.65e-25,9;CL:0002420,9.65e-25,9;CL:0002419,9.65e-25,9;CL:0000790,9.65e-25,9;CL:0000084,2.75e-20,11;CL:0000827,2.75e-20,11;CL:0000838,1.29e-18,12;CL:0000624,5.69e-18,8;CL:0000542,3.38e-17,13;CL:0000051,3.38e-17,13;CL:0000893,6.10e-14,6;CL:0002489,6.10e-14,6;CL:0000898,6.10e-14,6;CL:0000809,6.10e-14,6;CL:0000810,6.10e-14,6;CL:0000895,6.10e-14,6;CL:0000808,6.10e-14,6;CL:0000894,6.10e-14,6;CL:0000806,6.10e-14,6;CL:0000807,6.10e-14,6;CL:0000805,6.10e-14,6;CL:0002425,6.10e-14,6;CL:0002436,6.10e-14,6;CL:0002427,6.10e-14,6;CL:0002428,6.10e-14,6;CL:0002429,6.10e-14,6;CL:0002433,6.10e-14,6;CL:0002431,6.10e-14,6;CL:0002432,6.10e-14,6;CL:0000738,3.46e-13,17;CL:0002087,3.46e-13,17;CL:0000625,1.63e-10,1;CL:0002031,5.39e-09,25;CL:0000988,4.94e-07,32;CL:0002032,4.94e-07,32;CL:0000037,4.94e-07,32;CL:0000837,4.94e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002370!4.36e-30!23;UBERON:0000974!4.36e-30!23;UBERON:0004807!4.36e-30!23;UBERON:0005058!4.36e-30!23;UBERON:0003351!4.36e-30!23;UBERON:0009113!4.36e-30!23;UBERON:0003295!4.36e-30!23;UBERON:0009722!4.36e-30!23;UBERON:0005562!4.36e-30!23;UBERON:0007690!4.36e-30!23;UBERON:0006562!1.22e-28!24;UBERON:0003408!1.22e-28!24;UBERON:0001557!1.22e-28!24;UBERON:0001042!1.22e-28!24;UBERON:0008814!1.22e-28!24;UBERON:0009145!1.22e-28!24;UBERON:0004177!1.59e-28!29;UBERON:0000072!6.10e-25!27;UBERON:0002193!8.06e-19!48;UBERON:0000065!1.16e-18!41;UBERON:0002390!1.59e-18!45;UBERON:0003061!1.59e-18!45;UBERON:0000063!3.46e-18!35;UBERON:0001004!4.27e-18!42;UBERON:0005057!4.93e-14!51;UBERON:0002405!3.40e-11!70;UBERON:0003929!5.99e-10!55;UBERON:0003081!1.10e-09!88;UBERON:0005911!4.34e-09!69;UBERON:0001041!5.47e-09!92;UBERON:0002368!9.24e-09!60;UBERON:0000077!3.09e-08!97;UBERON:0002530!9.24e-08!65;UBERON:0000490!1.40e-07!66|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.92e-24,23;UBERON:0000974,5.92e-24,23;UBERON:0004807,5.92e-24,23;UBERON:0005058,5.92e-24,23;UBERON:0003351,5.92e-24,23;UBERON:0009113,5.92e-24,23;UBERON:0003295,5.92e-24,23;UBERON:0009722,5.92e-24,23;UBERON:0005562,5.92e-24,23;UBERON:0007690,5.92e-24,23;UBERON:0006562,6.03e-23,24;UBERON:0003408,6.03e-23,24;UBERON:0001557,6.03e-23,24;UBERON:0001042,6.03e-23,24;UBERON:0008814,6.03e-23,24;UBERON:0009145,6.03e-23,24;UBERON:0000072,2.28e-20,27;UBERON:0004177,6.03e-19,29;UBERON:0005057,6.03e-19,29;UBERON:0000077,1.20e-15,35;UBERON:0007811,3.34e-15,36;UBERON:0000065,2.64e-13,41;UBERON:0001004,5.58e-13,42;UBERON:0000153,1.14e-12,43;UBERON:0002390,4.34e-12,45;UBERON:0003061,4.34e-12,45;UBERON:0002193,2.62e-11,48;UBERON:0002405,2.62e-11,48;UBERON:0003929,8.15e-10,55;UBERON:0002368,5.85e-09,60;UBERON:0002530,3.11e-08,65;UBERON:0000490,4.22e-08,66;UBERON:0005911,9.99e-08,69;UBERON:0000949,2.20e-07,72|phase1_expression=0,0,0,0,0,0,0,0.258246646883153,1.83025338797167,0.234064526321993,1.19852577757853,0.398860794976682,2.22560948910567,0.786783621770977,0,0,0,0,0,0,0,0.198581902401771,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45072428402269,2.68875039313971,0,0,0,0,0,0,0,0,0.449949858640699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.127070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341741761595705,0,0,0,0,0.228778173206523,0.509935289981566,0.419854356970974,0.138199973804424,0,0,0,0,0,0,0.134864346384821,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.102710957164827,0.51968329191118,0,0.198681354781265,0.841368146639782,1.18151621739662,0.908698049533329,0.609654453239999,1.10908803650525,1.8516997340553,1.73181314952593,1.75315353272353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:60828457..60828460,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=651 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:60828457..60828460,+ | |||
|id=chr1:60828457..60828460,+ | |||
|ontology_enrichment_celltype=CL:0000791!7.38e-21!9;CL:0000789!7.38e-21!9;CL:0002420!7.38e-21!9;CL:0002419!7.38e-21!9;CL:0000790!7.38e-21!9;CL:0000084!2.32e-20!11;CL:0000827!2.32e-20!11;CL:0000838!1.76e-18!12;CL:0000624!1.83e-18!8;CL:0000542!6.89e-17!13;CL:0000051!6.89e-17!13;CL:0000893!2.44e-14!6;CL:0002489!2.44e-14!6;CL:0000898!2.44e-14!6;CL:0000809!2.44e-14!6;CL:0000810!2.44e-14!6;CL:0000895!2.44e-14!6;CL:0000808!2.44e-14!6;CL:0000894!2.44e-14!6;CL:0000806!2.44e-14!6;CL:0000807!2.44e-14!6;CL:0000805!2.44e-14!6;CL:0002425!2.44e-14!6;CL:0002436!2.44e-14!6;CL:0002427!2.44e-14!6;CL:0002428!2.44e-14!6;CL:0002429!2.44e-14!6;CL:0002433!2.44e-14!6;CL:0002431!2.44e-14!6;CL:0002432!2.44e-14!6;CL:0000738!2.13e-12!17;CL:0002087!2.13e-12!17;CL:0000988!4.54e-08!32;CL:0002032!4.54e-08!32;CL:0000037!4.54e-08!32;CL:0000566!4.54e-08!32;CL:0000837!4.54e-08!32;CL:0002031!9.45e-08!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,9.65e-25,9;CL:0000789,9.65e-25,9;CL:0002420,9.65e-25,9;CL:0002419,9.65e-25,9;CL:0000790,9.65e-25,9;CL:0000084,2.75e-20,11;CL:0000827,2.75e-20,11;CL:0000838,1.29e-18,12;CL:0000624,5.69e-18,8;CL:0000542,3.38e-17,13;CL:0000051,3.38e-17,13;CL:0000893,6.10e-14,6;CL:0002489,6.10e-14,6;CL:0000898,6.10e-14,6;CL:0000809,6.10e-14,6;CL:0000810,6.10e-14,6;CL:0000895,6.10e-14,6;CL:0000808,6.10e-14,6;CL:0000894,6.10e-14,6;CL:0000806,6.10e-14,6;CL:0000807,6.10e-14,6;CL:0000805,6.10e-14,6;CL:0002425,6.10e-14,6;CL:0002436,6.10e-14,6;CL:0002427,6.10e-14,6;CL:0002428,6.10e-14,6;CL:0002429,6.10e-14,6;CL:0002433,6.10e-14,6;CL:0002431,6.10e-14,6;CL:0002432,6.10e-14,6;CL:0000738,3.46e-13,17;CL:0002087,3.46e-13,17;CL:0000625,1.63e-10,1;CL:0002031,5.39e-09,25;CL:0000988,4.94e-07,32;CL:0002032,4.94e-07,32;CL:0000037,4.94e-07,32;CL:0000837,4.94e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!4.36e-30!23;UBERON:0000974!4.36e-30!23;UBERON:0004807!4.36e-30!23;UBERON:0005058!4.36e-30!23;UBERON:0003351!4.36e-30!23;UBERON:0009113!4.36e-30!23;UBERON:0003295!4.36e-30!23;UBERON:0009722!4.36e-30!23;UBERON:0005562!4.36e-30!23;UBERON:0007690!4.36e-30!23;UBERON:0006562!1.22e-28!24;UBERON:0003408!1.22e-28!24;UBERON:0001557!1.22e-28!24;UBERON:0001042!1.22e-28!24;UBERON:0008814!1.22e-28!24;UBERON:0009145!1.22e-28!24;UBERON:0004177!1.59e-28!29;UBERON:0000072!6.10e-25!27;UBERON:0002193!8.06e-19!48;UBERON:0000065!1.16e-18!41;UBERON:0002390!1.59e-18!45;UBERON:0003061!1.59e-18!45;UBERON:0000063!3.46e-18!35;UBERON:0001004!4.27e-18!42;UBERON:0005057!4.93e-14!51;UBERON:0002405!3.40e-11!70;UBERON:0003929!5.99e-10!55;UBERON:0003081!1.10e-09!88;UBERON:0005911!4.34e-09!69;UBERON:0001041!5.47e-09!92;UBERON:0002368!9.24e-09!60;UBERON:0000077!3.09e-08!97;UBERON:0002530!9.24e-08!65;UBERON:0000490!1.40e-07!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.92e-24,23;UBERON:0000974,5.92e-24,23;UBERON:0004807,5.92e-24,23;UBERON:0005058,5.92e-24,23;UBERON:0003351,5.92e-24,23;UBERON:0009113,5.92e-24,23;UBERON:0003295,5.92e-24,23;UBERON:0009722,5.92e-24,23;UBERON:0005562,5.92e-24,23;UBERON:0007690,5.92e-24,23;UBERON:0006562,6.03e-23,24;UBERON:0003408,6.03e-23,24;UBERON:0001557,6.03e-23,24;UBERON:0001042,6.03e-23,24;UBERON:0008814,6.03e-23,24;UBERON:0009145,6.03e-23,24;UBERON:0000072,2.28e-20,27;UBERON:0004177,6.03e-19,29;UBERON:0005057,6.03e-19,29;UBERON:0000077,1.20e-15,35;UBERON:0007811,3.34e-15,36;UBERON:0000065,2.64e-13,41;UBERON:0001004,5.58e-13,42;UBERON:0000153,1.14e-12,43;UBERON:0002390,4.34e-12,45;UBERON:0003061,4.34e-12,45;UBERON:0002193,2.62e-11,48;UBERON:0002405,2.62e-11,48;UBERON:0003929,8.15e-10,55;UBERON:0002368,5.85e-09,60;UBERON:0002530,3.11e-08,65;UBERON:0000490,4.22e-08,66;UBERON:0005911,9.99e-08,69;UBERON:0000949,2.20e-07,72 | |||
|phase1_expression=0,0,0,0,0,0,0,0.258246646883153,1.83025338797167,0.234064526321993,1.19852577757853,0.398860794976682,2.22560948910567,0.786783621770977,0,0,0,0,0,0,0,0.198581902401771,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45072428402269,2.68875039313971,0,0,0,0,0,0,0,0,0.449949858640699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0,0.239630249011841,0,0.127070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341741761595705,0,0,0,0,0.228778173206523,0.509935289981566,0.419854356970974,0.138199973804424,0,0,0,0,0,0,0.134864346384821,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0.102710957164827,0.51968329191118,0,0.198681354781265,0.841368146639782,1.18151621739662,0.908698049533329,0.609654453239999,1.10908803650525,1.8516997340553,1.73181314952593,1.75315353272353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:60828457..60828460,+ | |||
}} |
Revision as of 20:39, 13 September 2013
Short description: | p@chr1:60828457..60828460, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:60828457..60828460, + |
Coexpression cluster: | MCL_coexpression_mm9:651 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 5.92e-24 | 23 |
neck | 5.92e-24 | 23 |
respiratory system epithelium | 5.92e-24 | 23 |
hemolymphoid system gland | 5.92e-24 | 23 |
pharyngeal epithelium | 5.92e-24 | 23 |
thymic region | 5.92e-24 | 23 |
pharyngeal gland | 5.92e-24 | 23 |
entire pharyngeal arch endoderm | 5.92e-24 | 23 |
thymus primordium | 5.92e-24 | 23 |
early pharyngeal endoderm | 5.92e-24 | 23 |
pharynx | 6.03e-23 | 24 |
gland of gut | 6.03e-23 | 24 |
upper respiratory tract | 6.03e-23 | 24 |
chordate pharynx | 6.03e-23 | 24 |
pharyngeal arch system | 6.03e-23 | 24 |
pharyngeal region of foregut | 6.03e-23 | 24 |
segment of respiratory tract | 2.28e-20 | 27 |
hemopoietic organ | 6.03e-19 | 29 |
immune organ | 6.03e-19 | 29 |
mixed endoderm/mesoderm-derived structure | 1.20e-15 | 35 |
craniocervical region | 3.34e-15 | 36 |
respiratory tract | 2.64e-13 | 41 |
respiratory system | 5.58e-13 | 42 |
anterior region of body | 1.14e-12 | 43 |
hematopoietic system | 4.34e-12 | 45 |
blood island | 4.34e-12 | 45 |
hemolymphoid system | 2.62e-11 | 48 |
immune system | 2.62e-11 | 48 |
gut epithelium | 8.15e-10 | 55 |
endocrine gland | 5.85e-09 | 60 |
gland | 3.11e-08 | 65 |
unilaminar epithelium | 4.22e-08 | 66 |
endo-epithelium | 9.99e-08 | 69 |
endocrine system | 2.20e-07 | 72 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.