FFCP PHASE1:Mm9::chr8:49640611..49640622,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=23965|HGNC=|MCL_coexpression_id=2482|UniProt=D3YW49|association_with_transcript=-25bp_to_uc009lru.1_5end|description=CAGE_peak_5_at_Odz3_5end|id=chr8:49640611..49640622,-|ontology_enrichment_celltype=CL:0002319!4.03e-08!43;CL:0000540!5.77e-08!33;CL:0000047!5.77e-08!33;CL:0000031!5.77e-08!33;CL:0000404!5.77e-08!33;CL:0000221!6.88e-08!44;CL:0000133!6.88e-08!44;CL:0000117!1.46e-07!23;CL:0000337!1.46e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.54e-08,23;CL:0000337,1.54e-08,23;CL:0000540,5.19e-08,33;CL:0000047,5.19e-08,33;CL:0000031,5.19e-08,33;CL:0000404,5.19e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.41e-17!73;UBERON:0005743!5.41e-17!73;UBERON:0000073!7.07e-17!75;UBERON:0001016!7.07e-17!75;UBERON:0002346!8.30e-15!71;UBERON:0003075!8.30e-15!71;UBERON:0007284!8.30e-15!71;UBERON:0002020!1.18e-14!34;UBERON:0001049!2.32e-14!52;UBERON:0005068!2.32e-14!52;UBERON:0006241!2.32e-14!52;UBERON:0007135!2.32e-14!52;UBERON:0004121!5.43e-14!102;UBERON:0000924!5.43e-14!102;UBERON:0006601!5.43e-14!102;UBERON:0002780!5.58e-14!39;UBERON:0001890!5.58e-14!39;UBERON:0006240!5.58e-14!39;UBERON:0003080!5.76e-14!40;UBERON:0003056!7.38e-14!49;UBERON:0000955!1.17e-12!50;UBERON:0006238!1.17e-12!50;UBERON:0002791!1.87e-12!29;UBERON:0003528!1.87e-12!29;UBERON:0001893!1.87e-12!29;UBERON:0002616!4.32e-12!49;UBERON:0000033!5.17e-12!63;UBERON:0000956!2.16e-11!21;UBERON:0001869!2.16e-11!21;UBERON:0000203!2.16e-11!21;UBERON:0002619!6.16e-09!17;UBERON:0002021!2.20e-08!10;UBERON:0000411!2.20e-08!10;UBERON:0001950!2.20e-08!10;UBERON:0000468!2.27e-08!333;UBERON:0000025!1.99e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.13e-16,34;UBERON:0001017,5.49e-15,73;UBERON:0002780,3.52e-14,39;UBERON:0001890,3.52e-14,39;UBERON:0006240,3.52e-14,39;UBERON:0001016,3.96e-14,75;UBERON:0003080,1.56e-13,40;UBERON:0003528,1.81e-13,29;UBERON:0002791,1.81e-13,29;UBERON:0001893,1.81e-13,29;UBERON:0000956,2.93e-13,21;UBERON:0001869,2.93e-13,21;UBERON:0000203,2.93e-13,21;UBERON:0000073,6.59e-13,54;UBERON:0001049,2.12e-12,52;UBERON:0005068,2.12e-12,52;UBERON:0006241,2.12e-12,52;UBERON:0007135,2.12e-12,52;UBERON:0003056,2.09e-11,49;UBERON:0002346,2.47e-11,64;UBERON:0003075,2.47e-11,64;UBERON:0007284,2.47e-11,64;UBERON:0000955,5.68e-11,47;UBERON:0006238,5.68e-11,47;UBERON:0002021,6.90e-11,10;UBERON:0000411,6.90e-11,10;UBERON:0001950,6.90e-11,10;UBERON:0002616,2.63e-10,46;UBERON:0002619,5.44e-10,17;UBERON:0004121,1.67e-09,95;UBERON:0000924,1.67e-09,95;UBERON:0006601,1.67e-09,95;UBERON:0010371,6.16e-09,73|phase1_expression=1.44133962394315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.872100625521786,1.31811709640683,0.777719596297134,1.53985063787899,0,0,0,0,0,0,0,2.22548106945558,2.11596391708813,1.90149421051854,1.0165335962074,0,0,0,0,0.898800331555214,1.53687322128622,2.7996195323289,3.78016627328734,3.15487442027073,1.42825492201902,1.32521124570968,1.10241719293459,1.24599112323707,0.919218786610021,0,1.27687338085188,1.0752457327937,4.08847491963601,1.82975287204819,2.08365348222704,1.3959149950069,0.56276261003168,0.61119299110724,1.76777151284201,2.70506193518296,3.35519002485541,0.605809546665472,0.755715601067855,0,0,0,1.07940638327563,1.94932925234301,0.896053774194671,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0.253359865475099,0,1.25602267690966,0.258937883647172,0.593768556259299,0.173485326766136,0.608930956624282,1.15307748628029,0.452167921657868,0.705532242814229,1.0053327306374,0.494389935468748,0.289198713839823,0,0.808834249737046,0.441683036920787,0.484875253135222,0,0,0.209446706813455,0,0,0,0,0.898743836428936,0.457500602818626,1.38219787324151,2.78118912307642,2.81287003063364,1.0389402227978,1.94689515681309,2.74966282395854,0.248813941220186,0,0.210441855886474,1.69156575851515,0.459804208866946,1.26043490863744,0.60281927134286,0.816437989815934,1.2811372028485,0.937017245597288,0.776110112217047,1.07783996466421,1.51284864134255,2.11141348996739,0.876782929710299,1.66828349535359,1.0447564995665,2.26360350048738,2.58744546864041,0,0,0,0.414251545071004,0.938104239924385,0.900310307305074,0.473489471170421,0.590292695242212,0.154267112887378,0,0.536546802799238,0.233530684734339,0.16455984991348,0.32833492815819,0.324275238183423,0,0.219550115291051,0.268412837520744,1.47202963994889,1.9551876352064,0,0,1.2797295032114,1.39342003116263,1.80414445850931,1.4117846723634,1.55664630691409,0.570676878337677,0,0.658795818896044,0.502670417600539,0,0.19496408711912,0.898819408654221,0.216138049874694,0.199141273254367,0.569003702859245,1.02823661348756,1.1270773567308,1.01825663922657,1.93952487167626,1.40271639780637,0.505892296994058,0.295220295959204,0,0.123397163921801,0.889357881261447,0.333690211432188,0.786235980452812,0.224862112384854,0.811440485554012,1.20588579876208,1.78238096246994,1.43848068725405,1.29708181420028,2.471052718692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| ||
|EntrezGene=23965 | |||
|HGNC= | |||
|MCL_coexpression_id=2482 | |||
|UniProt=D3YW49 | |||
|association_with_transcript=-25bp_to_uc009lru.1_5end | |||
|description=CAGE_peak_5_at_Odz3_5end | |||
|id=chr8:49640611..49640622,- | |||
|ontology_enrichment_celltype=CL:0002319!4.03e-08!43;CL:0000540!5.77e-08!33;CL:0000047!5.77e-08!33;CL:0000031!5.77e-08!33;CL:0000404!5.77e-08!33;CL:0000221!6.88e-08!44;CL:0000133!6.88e-08!44;CL:0000117!1.46e-07!23;CL:0000337!1.46e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.54e-08,23;CL:0000337,1.54e-08,23;CL:0000540,5.19e-08,33;CL:0000047,5.19e-08,33;CL:0000031,5.19e-08,33;CL:0000404,5.19e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.41e-17!73;UBERON:0005743!5.41e-17!73;UBERON:0000073!7.07e-17!75;UBERON:0001016!7.07e-17!75;UBERON:0002346!8.30e-15!71;UBERON:0003075!8.30e-15!71;UBERON:0007284!8.30e-15!71;UBERON:0002020!1.18e-14!34;UBERON:0001049!2.32e-14!52;UBERON:0005068!2.32e-14!52;UBERON:0006241!2.32e-14!52;UBERON:0007135!2.32e-14!52;UBERON:0004121!5.43e-14!102;UBERON:0000924!5.43e-14!102;UBERON:0006601!5.43e-14!102;UBERON:0002780!5.58e-14!39;UBERON:0001890!5.58e-14!39;UBERON:0006240!5.58e-14!39;UBERON:0003080!5.76e-14!40;UBERON:0003056!7.38e-14!49;UBERON:0000955!1.17e-12!50;UBERON:0006238!1.17e-12!50;UBERON:0002791!1.87e-12!29;UBERON:0003528!1.87e-12!29;UBERON:0001893!1.87e-12!29;UBERON:0002616!4.32e-12!49;UBERON:0000033!5.17e-12!63;UBERON:0000956!2.16e-11!21;UBERON:0001869!2.16e-11!21;UBERON:0000203!2.16e-11!21;UBERON:0002619!6.16e-09!17;UBERON:0002021!2.20e-08!10;UBERON:0000411!2.20e-08!10;UBERON:0001950!2.20e-08!10;UBERON:0000468!2.27e-08!333;UBERON:0000025!1.99e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.13e-16,34;UBERON:0001017,5.49e-15,73;UBERON:0002780,3.52e-14,39;UBERON:0001890,3.52e-14,39;UBERON:0006240,3.52e-14,39;UBERON:0001016,3.96e-14,75;UBERON:0003080,1.56e-13,40;UBERON:0003528,1.81e-13,29;UBERON:0002791,1.81e-13,29;UBERON:0001893,1.81e-13,29;UBERON:0000956,2.93e-13,21;UBERON:0001869,2.93e-13,21;UBERON:0000203,2.93e-13,21;UBERON:0000073,6.59e-13,54;UBERON:0001049,2.12e-12,52;UBERON:0005068,2.12e-12,52;UBERON:0006241,2.12e-12,52;UBERON:0007135,2.12e-12,52;UBERON:0003056,2.09e-11,49;UBERON:0002346,2.47e-11,64;UBERON:0003075,2.47e-11,64;UBERON:0007284,2.47e-11,64;UBERON:0000955,5.68e-11,47;UBERON:0006238,5.68e-11,47;UBERON:0002021,6.90e-11,10;UBERON:0000411,6.90e-11,10;UBERON:0001950,6.90e-11,10;UBERON:0002616,2.63e-10,46;UBERON:0002619,5.44e-10,17;UBERON:0004121,1.67e-09,95;UBERON:0000924,1.67e-09,95;UBERON:0006601,1.67e-09,95;UBERON:0010371,6.16e-09,73 | |||
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|short_description=p5@Odz3 | |||
}} |
Revision as of 15:46, 14 September 2013
Short description: | p5@Odz3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Odz3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2482 |
Association with transcript: | -25bp_to_uc009lru.1_5end |
EntrezGene: | Odz3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.54e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.54e-08 | 23 |
neuron | 5.19e-08 | 33 |
neuronal stem cell | 5.19e-08 | 33 |
neuroblast | 5.19e-08 | 33 |
electrically signaling cell | 5.19e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
gray matter | 2.13e-16 | 34 |
central nervous system | 5.49e-15 | 73 |
regional part of forebrain | 3.52e-14 | 39 |
forebrain | 3.52e-14 | 39 |
future forebrain | 3.52e-14 | 39 |
nervous system | 3.96e-14 | 75 |
anterior neural tube | 1.56e-13 | 40 |
brain grey matter | 1.81e-13 | 29 |
regional part of telencephalon | 1.81e-13 | 29 |
telencephalon | 1.81e-13 | 29 |
cerebral cortex | 2.93e-13 | 21 |
cerebral hemisphere | 2.93e-13 | 21 |
pallium | 2.93e-13 | 21 |
regional part of nervous system | 6.59e-13 | 54 |
neural tube | 2.12e-12 | 52 |
neural rod | 2.12e-12 | 52 |
future spinal cord | 2.12e-12 | 52 |
neural keel | 2.12e-12 | 52 |
pre-chordal neural plate | 2.09e-11 | 49 |
neurectoderm | 2.47e-11 | 64 |
neural plate | 2.47e-11 | 64 |
presumptive neural plate | 2.47e-11 | 64 |
brain | 5.68e-11 | 47 |
future brain | 5.68e-11 | 47 |
occipital lobe | 6.90e-11 | 10 |
visual cortex | 6.90e-11 | 10 |
neocortex | 6.90e-11 | 10 |
regional part of brain | 2.63e-10 | 46 |
regional part of cerebral cortex | 5.44e-10 | 17 |
ectoderm-derived structure | 1.67e-09 | 95 |
ectoderm | 1.67e-09 | 95 |
presumptive ectoderm | 1.67e-09 | 95 |
ecto-epithelium | 6.16e-09 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.