FFCP PHASE1:Mm9::chr1:190831708..190831731,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=226823|HGNC=|MCL_coexpression_id=1|UniProt=Q8BFX3|association_with_transcript=0bp_to_ENSMUST00000085678,NM_172650,uc007eai.1,uc007eaj.1,uc011wyh.1_5end|description=CAGE_peak_1_at_Kctd3_5end|id=chr1:190831708..190831731,-|ontology_enrichment_celltype=CL:0000117!2.27e-07!23;CL:0000337!2.27e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.27e-07,23;CL:0000337,2.27e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.14e-14!52;UBERON:0005068!2.14e-14!52;UBERON:0006241!2.14e-14!52;UBERON:0007135!2.14e-14!52;UBERON:0000033!2.38e-13!63;UBERON:0002020!1.60e-12!34;UBERON:0003056!3.66e-12!49;UBERON:0000955!4.36e-12!50;UBERON:0006238!4.36e-12!50;UBERON:0002616!1.19e-11!49;UBERON:0002346!2.82e-11!71;UBERON:0003075!2.82e-11!71;UBERON:0007284!2.82e-11!71;UBERON:0003080!4.55e-11!40;UBERON:0002780!1.51e-10!39;UBERON:0001890!1.51e-10!39;UBERON:0006240!1.51e-10!39;UBERON:0000468!3.36e-10!333;UBERON:0002791!4.00e-10!29;UBERON:0003528!4.00e-10!29;UBERON:0001893!4.00e-10!29;UBERON:0001017!1.53e-09!73;UBERON:0005743!1.53e-09!73;UBERON:0004121!7.45e-09!102;UBERON:0000924!7.45e-09!102;UBERON:0006601!7.45e-09!102;UBERON:0000073!1.69e-08!75;UBERON:0001016!1.69e-08!75;UBERON:0000922!1.71e-07!328;UBERON:0002021!3.10e-07!10;UBERON:0000411!3.10e-07!10;UBERON:0001950!3.10e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010371,1.89e-15,73;UBERON:0001049,2.14e-14,52;UBERON:0005068,2.14e-14,52;UBERON:0006241,2.14e-14,52;UBERON:0007135,2.14e-14,52;UBERON:0000073,5.25e-14,54;UBERON:0002346,1.45e-13,64;UBERON:0003075,1.45e-13,64;UBERON:0007284,1.45e-13,64;UBERON:0002020,1.60e-12,34;UBERON:0003056,3.66e-12,49;UBERON:0000955,7.48e-12,47;UBERON:0006238,7.48e-12,47;UBERON:0002616,2.05e-11,46;UBERON:0010314,2.21e-11,92;UBERON:0003080,4.55e-11,40;UBERON:0002780,1.51e-10,39;UBERON:0001890,1.51e-10,39;UBERON:0006240,1.51e-10,39;UBERON:0004121,2.74e-10,95;UBERON:0000924,2.74e-10,95;UBERON:0006601,2.74e-10,95;UBERON:0003528,4.00e-10,29;UBERON:0002791,4.00e-10,29;UBERON:0001893,4.00e-10,29;UBERON:0001017,1.53e-09,73;UBERON:0001016,1.69e-08,75;UBERON:0002021,3.10e-07,10;UBERON:0000411,3.10e-07,10;UBERON:0001950,3.10e-07,10|phase1_expression=33.3109601977971,24.0793031271159,25.479957405814,22.3823516367054,25.0447864973174,35.4225263734088,27.7999042308676,7.23090611272827,9.99599927276834,9.59664557920173,10.7867319982068,12.4444568032725,9.41604014621631,9.52882386367072,9.99329285446988,10.5287139042709,5.59649502502517,16.2463015159492,18.2362196695633,20.7950929381035,20.4103896362567,11.7163322417045,7.31359409589019,10.3995074815714,10.5528269290898,24.1177424928308,22.830385796431,22.8399506647042,16.1519906537918,24.4469225867133,18.8470934057009,6.35030673459631,7.99584223859941,0,28.3074587356249,19.4494535069436,24.5003227514843,3.34825304589526,3.906676722619,4.18818995179039,4.1176204162171,6.14740936462601,6.311634589405,11.330713617802,11.1514624341466,13.3989129078028,4.69434806608824,10.4652075062614,10.5449367712546,11.2769341463084,11.8988458381558,14.3752564364972,16.9460432118314,5.07753499407941,8.06625117941913,8.7468208252222,13.4670716771216,12.8918023069361,30.7521020506589,29.0945038599618,32.9592329823213,6.77689064138264,3.55717918444456,1.3498495759221,3.9554654502679,2.1314403448383,6.2916023208865,7.68436610643109,17.8346133170582,22.1409738863973,24.1873705554089,36.2776750192831,27.6085676189517,24.9881230398506,25.2073588777962,28.4957823849107,18.7196997698961,22.2175968268227,35.6367157154485,31.2570501920559,33.941915776494,30.7338888628488,34.0603258781685,25.8870800614573,26.8924916087186,30.9360014747351,40.148813985347,33.5519002485541,9.54150035998119,10.6555899750568,11.0148505706638,7.74381489283248,25.8389106808945,5.39703191637817,9.09686984426737,14.3368603871147,10.1119982494861,9.88495870952735,9.09251016110041,8.48014978824817,33.6615773266266,17.9657068380045,10.1922095882658,14.2213340630666,18.8347205679756,20.2687892380079,20.7265022456061,12.4460428893775,13.9826457169473,11.7269289861212,20.6447538851702,14.6143429589828,15.4512383161559,16.2780451796832,17.7558947774914,19.2269884734403,14.8316980640624,17.3519228303894,9.73071607144862,25.7209291416381,19.2132121060542,18.9101348722737,31.6865994070808,27.5213949190854,42.9365748967583,15.0719662573069,14.2579998162045,13.197860081855,10.0385479387721,35.9497534571574,36.6000482254901,40.2093926761166,40.5010666048004,58.814555185976,38.6485762880782,50.1325502879371,23.7285717771237,18.785452562124,15.1633655060205,17.6771158944638,21.3397526458834,24.3696230699481,22.3277040958633,22.0029034040144,32.8616290900914,29.2099282249457,38.9799174168472,24.5768202202065,19.6166873568886,21.7471992192992,22.6976950171494,20.8235945806196,18.9072129473407,17.0643561595862,21.6071243228341,22.8889406841267,7.72434506044558,11.0659600059328,12.5031939734061,16.5700618028402,19.9347150983932,23.948254174315,21.5437709382541,24.7922932001729,24.5284709490931,22.0907247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| ||
|EntrezGene=226823 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8BFX3 | |||
|association_with_transcript=0bp_to_ENSMUST00000085678,NM_172650,uc007eai.1,uc007eaj.1,uc011wyh.1_5end | |||
|description=CAGE_peak_1_at_Kctd3_5end | |||
|id=chr1:190831708..190831731,- | |||
|ontology_enrichment_celltype=CL:0000117!2.27e-07!23;CL:0000337!2.27e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.27e-07,23;CL:0000337,2.27e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.14e-14!52;UBERON:0005068!2.14e-14!52;UBERON:0006241!2.14e-14!52;UBERON:0007135!2.14e-14!52;UBERON:0000033!2.38e-13!63;UBERON:0002020!1.60e-12!34;UBERON:0003056!3.66e-12!49;UBERON:0000955!4.36e-12!50;UBERON:0006238!4.36e-12!50;UBERON:0002616!1.19e-11!49;UBERON:0002346!2.82e-11!71;UBERON:0003075!2.82e-11!71;UBERON:0007284!2.82e-11!71;UBERON:0003080!4.55e-11!40;UBERON:0002780!1.51e-10!39;UBERON:0001890!1.51e-10!39;UBERON:0006240!1.51e-10!39;UBERON:0000468!3.36e-10!333;UBERON:0002791!4.00e-10!29;UBERON:0003528!4.00e-10!29;UBERON:0001893!4.00e-10!29;UBERON:0001017!1.53e-09!73;UBERON:0005743!1.53e-09!73;UBERON:0004121!7.45e-09!102;UBERON:0000924!7.45e-09!102;UBERON:0006601!7.45e-09!102;UBERON:0000073!1.69e-08!75;UBERON:0001016!1.69e-08!75;UBERON:0000922!1.71e-07!328;UBERON:0002021!3.10e-07!10;UBERON:0000411!3.10e-07!10;UBERON:0001950!3.10e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,1.89e-15,73;UBERON:0001049,2.14e-14,52;UBERON:0005068,2.14e-14,52;UBERON:0006241,2.14e-14,52;UBERON:0007135,2.14e-14,52;UBERON:0000073,5.25e-14,54;UBERON:0002346,1.45e-13,64;UBERON:0003075,1.45e-13,64;UBERON:0007284,1.45e-13,64;UBERON:0002020,1.60e-12,34;UBERON:0003056,3.66e-12,49;UBERON:0000955,7.48e-12,47;UBERON:0006238,7.48e-12,47;UBERON:0002616,2.05e-11,46;UBERON:0010314,2.21e-11,92;UBERON:0003080,4.55e-11,40;UBERON:0002780,1.51e-10,39;UBERON:0001890,1.51e-10,39;UBERON:0006240,1.51e-10,39;UBERON:0004121,2.74e-10,95;UBERON:0000924,2.74e-10,95;UBERON:0006601,2.74e-10,95;UBERON:0003528,4.00e-10,29;UBERON:0002791,4.00e-10,29;UBERON:0001893,4.00e-10,29;UBERON:0001017,1.53e-09,73;UBERON:0001016,1.69e-08,75;UBERON:0002021,3.10e-07,10;UBERON:0000411,3.10e-07,10;UBERON:0001950,3.10e-07,10 | |||
|phase1_expression=33.3109601977971,24.0793031271159,25.479957405814,22.3823516367054,25.0447864973174,35.4225263734088,27.7999042308676,7.23090611272827,9.99599927276834,9.59664557920173,10.7867319982068,12.4444568032725,9.41604014621631,9.52882386367072,9.99329285446988,10.5287139042709,5.59649502502517,16.2463015159492,18.2362196695633,20.7950929381035,20.4103896362567,11.7163322417045,7.31359409589019,10.3995074815714,10.5528269290898,24.1177424928308,22.830385796431,22.8399506647042,16.1519906537918,24.4469225867133,18.8470934057009,6.35030673459631,7.99584223859941,0,28.3074587356249,19.4494535069436,24.5003227514843,3.34825304589526,3.906676722619,4.18818995179039,4.1176204162171,6.14740936462601,6.311634589405,11.330713617802,11.1514624341466,13.3989129078028,4.69434806608824,10.4652075062614,10.5449367712546,11.2769341463084,11.8988458381558,14.3752564364972,16.9460432118314,5.07753499407941,8.06625117941913,8.7468208252222,13.4670716771216,12.8918023069361,30.7521020506589,29.0945038599618,32.9592329823213,6.77689064138264,3.55717918444456,1.3498495759221,3.9554654502679,2.1314403448383,6.2916023208865,7.68436610643109,17.8346133170582,22.1409738863973,24.1873705554089,36.2776750192831,27.6085676189517,24.9881230398506,25.2073588777962,28.4957823849107,18.7196997698961,22.2175968268227,35.6367157154485,31.2570501920559,33.941915776494,30.7338888628488,34.0603258781685,25.8870800614573,26.8924916087186,30.9360014747351,40.148813985347,33.5519002485541,9.54150035998119,10.6555899750568,11.0148505706638,7.74381489283248,25.8389106808945,5.39703191637817,9.09686984426737,14.3368603871147,10.1119982494861,9.88495870952735,9.09251016110041,8.48014978824817,33.6615773266266,17.9657068380045,10.1922095882658,14.2213340630666,18.8347205679756,20.2687892380079,20.7265022456061,12.4460428893775,13.9826457169473,11.7269289861212,20.6447538851702,14.6143429589828,15.4512383161559,16.2780451796832,17.7558947774914,19.2269884734403,14.8316980640624,17.3519228303894,9.73071607144862,25.7209291416381,19.2132121060542,18.9101348722737,31.6865994070808,27.5213949190854,42.9365748967583,15.0719662573069,14.2579998162045,13.197860081855,10.0385479387721,35.9497534571574,36.6000482254901,40.2093926761166,40.5010666048004,58.814555185976,38.6485762880782,50.1325502879371,23.7285717771237,18.785452562124,15.1633655060205,17.6771158944638,21.3397526458834,24.3696230699481,22.3277040958633,22.0029034040144,32.8616290900914,29.2099282249457,38.9799174168472,24.5768202202065,19.6166873568886,21.7471992192992,22.6976950171494,20.8235945806196,18.9072129473407,17.0643561595862,21.6071243228341,22.8889406841267,7.72434506044558,11.0659600059328,12.5031939734061,16.5700618028402,19.9347150983932,23.948254174315,21.5437709382541,24.7922932001729,24.5284709490931,22.0907247512887,26.5590667385623,32.1104691509716,27.6460547854647,23.3117798992315,26.8337759596782,20.3217982521212,20.4181607220677,18.3862793701709,37.4316108444146,35.090472821336,15.5296828002385,15.073682299822,22.1819780556643,23.9203772016252,18.6857818917035,16.7397325437374,15.7888411129858,16.1691782195675,17.5575752771469,17.1286912912971,19.8554814952213,17.7071260116624,17.9366960149591,17.9763881730844,18.5878722892237,16.7278669533668,21.4324728076982,25.0204242615306,22.5415471346161,23.0126000465205,24.6319658702885,26.7217473782114,26.8755282778093,18.4512684974503,19.1538447966477,16.2884256376777,5.33614728756868,15.6834399373128,14.3488066432638,11.4679677316275,15.4173692255262,17.6059326619264,16.0414286622294,14.9601991474422,13.943629502653,15.6500005517206,21.5652309791032,18.2349064357567,20.594486425561,12.3763650194085,15.2487801493625,10.1313139486307,12.7479701214957,25.391849177245,20.2076570788112,28.856664581782,23.7037150771387,22.9483572695288,23.8043640886014,35.1240566144038,27.1132447862649,23.2537924131214,28.5424035896902,22.6131374307718,21.7583077151028,21.6973587872267,4.52373851817817,7.07077388964322,18.6870423747234,26.4899276452543,50.4128852561667,66.5762379843714,13.6066004662641,26.0045055020504,11.3582958989852,12.4940398174924,12.2791336707695,11.4705023017225,13.1451217708613,15.0030561318081,14.1683745586213,12.2747460322751,18.9738133414331,31.4894890093371,17.3166903954088,20.4775444217344,24.4330439030364,17.8167732810338,27.8764790513922,16.2663026223838,17.8370898609203,21.8781892516842,28.3489817165542,30.4360796464488,33.854106405037,24.7202936044704,30.3022771627013,30.3395287618383,30.5713964867496,49.5050607591297,13.6175842301515,21.6073312837572,22.7671283457648,22.076714608254,22.1675292052842,24.6148968290857,26.6569413375436,21.312546438022,14.0803024838226,24.9961843619308,15.4369878638473,20.1161228588606,24.3811284310817,25.150489695041,25.3069369286649,29.2170801546209,17.7803310344209,46.5417508046379,11.9609616558497,18.1620443807636,12.5932278611404,12.2439497053049,15.1730592770338,14.1842467388044,14.4481665494777,12.7355821614529,12.0233977209849,10.5013767981662,22.9343595346323,21.7551829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| |||
|short_description=p1@Kctd3 | |||
}} |
Revision as of 20:03, 13 September 2013
Short description: | p1@Kctd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kctd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000085678, NM_172650, uc007eai.1, uc007eaj.1, uc011wyh.1_5end |
EntrezGene: | Kctd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.27e-07 | 23 |
neuroblast (sensu Vertebrata) | 2.27e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 1.89e-15 | 73 |
neural tube | 2.14e-14 | 52 |
neural rod | 2.14e-14 | 52 |
future spinal cord | 2.14e-14 | 52 |
neural keel | 2.14e-14 | 52 |
regional part of nervous system | 5.25e-14 | 54 |
neurectoderm | 1.45e-13 | 64 |
neural plate | 1.45e-13 | 64 |
presumptive neural plate | 1.45e-13 | 64 |
gray matter | 1.60e-12 | 34 |
pre-chordal neural plate | 3.66e-12 | 49 |
brain | 7.48e-12 | 47 |
future brain | 7.48e-12 | 47 |
regional part of brain | 2.05e-11 | 46 |
structure with developmental contribution from neural crest | 2.21e-11 | 92 |
anterior neural tube | 4.55e-11 | 40 |
regional part of forebrain | 1.51e-10 | 39 |
forebrain | 1.51e-10 | 39 |
future forebrain | 1.51e-10 | 39 |
ectoderm-derived structure | 2.74e-10 | 95 |
ectoderm | 2.74e-10 | 95 |
presumptive ectoderm | 2.74e-10 | 95 |
brain grey matter | 4.00e-10 | 29 |
regional part of telencephalon | 4.00e-10 | 29 |
telencephalon | 4.00e-10 | 29 |
central nervous system | 1.53e-09 | 73 |
nervous system | 1.69e-08 | 75 |
occipital lobe | 3.10e-07 | 10 |
visual cortex | 3.10e-07 | 10 |
neocortex | 3.10e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.