FFCP PHASE1:Mm9::chr3:146475952..146475977,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18749|HGNC=|UniProt=P68181|association_with_transcript=-28bp_to_ENSMUST00000102515_5end|description=CAGE_peak_11_at_Prkacb_5end|id=chr3:146475952..146475977,-|ontology_enrichment_celltype=CL:0000117!2.34e-12!23;CL:0000337!2.34e-12!23;CL:0000540!1.37e-08!33;CL:0000047!1.37e-08!33;CL:0000031!1.37e-08!33;CL:0000404!1.37e-08!33;CL:0000221!6.17e-08!44;CL:0000133!6.17e-08!44;CL:0002319!1.25e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,2.18e-13,23;CL:0000337,2.18e-13,23;CL:0000540,1.76e-08,33;CL:0000047,1.76e-08,33;CL:0000031,1.76e-08,33;CL:0000404,1.76e-08,33;CL:0000221,1.81e-07,44;CL:0000133,1.81e-07,44;CL:0002319,3.78e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.51e-14!75;UBERON:0001016!1.51e-14!75;UBERON:0001017!1.92e-14!73;UBERON:0005743!1.92e-14!73;UBERON:0001049!6.06e-14!52;UBERON:0005068!6.06e-14!52;UBERON:0006241!6.06e-14!52;UBERON:0007135!6.06e-14!52;UBERON:0004121!3.29e-12!102;UBERON:0000924!3.29e-12!102;UBERON:0006601!3.29e-12!102;UBERON:0000955!3.30e-12!50;UBERON:0006238!3.30e-12!50;UBERON:0002346!8.46e-12!71;UBERON:0003075!8.46e-12!71;UBERON:0007284!8.46e-12!71;UBERON:0000033!1.15e-11!63;UBERON:0002616!1.19e-11!49;UBERON:0007811!6.56e-11!86;UBERON:0000153!1.37e-10!94;UBERON:0002020!1.44e-09!34;UBERON:0003056!1.95e-09!49;UBERON:0003080!1.87e-08!40;UBERON:0002780!6.27e-08!39;UBERON:0001890!6.27e-08!39;UBERON:0006240!6.27e-08!39;UBERON:0000025!1.19e-07!114;UBERON:0003076!4.17e-07!12;UBERON:0003057!4.17e-07!12;UBERON:0002791!4.36e-07!29;UBERON:0003528!4.36e-07!29;UBERON:0001893!4.36e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.63e-15,64;UBERON:0003075,2.63e-15,64;UBERON:0007284,2.63e-15,64;UBERON:0000073,4.71e-15,54;UBERON:0001049,1.18e-14,52;UBERON:0005068,1.18e-14,52;UBERON:0006241,1.18e-14,52;UBERON:0007135,1.18e-14,52;UBERON:0001016,4.41e-14,75;UBERON:0010371,4.79e-14,73;UBERON:0004121,5.13e-14,95;UBERON:0000924,5.13e-14,95;UBERON:0006601,5.13e-14,95;UBERON:0001017,5.85e-14,73;UBERON:0010314,5.43e-13,92;UBERON:0000955,9.51e-12,47;UBERON:0006238,9.51e-12,47;UBERON:0002616,3.69e-11,46;UBERON:0002020,3.63e-10,34;UBERON:0003056,1.45e-09,49;UBERON:0003080,1.02e-08,40;UBERON:0002780,3.73e-08,39;UBERON:0001890,3.73e-08,39;UBERON:0006240,3.73e-08,39;UBERON:0003076,1.23e-07,12;UBERON:0003057,1.23e-07,12;UBERON:0003528,1.82e-07,29;UBERON:0002791,1.82e-07,29;UBERON:0001893,1.82e-07,29;UBERON:0000025,2.71e-07,114|phase1_expression=0.960893082628764,0,0.454999239389536,0,0,0.33575854382378,0.233612640595526,0.774739940649458,0,0,1.02730780935303,0.717949430958028,0.856003649656029,0.524522414513984,1.66554880907831,0.809901069559304,0.699561878128147,1.10411757875383,1.50825876966313,0.84877930359606,1.44573593256819,1.39007331681239,0,0.319984845586813,0.22940928106717,0,0,0.215471232685889,0,0.252030129759931,0.665191531965914,1.90509202037889,1.23012957516914,0,0.288851619751275,0.498703936075477,0.204169356262369,0,0,1.0470474879476,0,0.683045484958446,1.45653105909346,0.755380907853464,1.11514624341466,1.10128051297009,2.34717403304412,1.09012578190223,0.878744730937887,0,0.979904951377538,1.43752564364972,0.838913030288682,0.725362142011344,0.672187598284928,0.771778308107841,1.14613375975503,0,2.22548106945558,5.28990979272033,1.90149421051854,0.338844532069132,0.889294796111139,0.899899717281399,0,0,0.898800331555214,2.68952813725088,3.31806759387129,3.37514845829227,3.78584930432488,2.85650984403804,3.75476519617743,3.30725157880376,2.39613677545591,1.83843757322004,1.10115880999389,2.93680877595932,4.91540906419979,2.50583946687368,2.65314166446988,1.56274011167028,5.30447698102624,2.8138130501584,3.36156145108982,2.65165726926301,2.70506193518296,2.60959224155421,1.66597625333005,1.13357340160178,0.289864488701678,0,2.03991400112325,0.539703191637817,0.649776417447669,0.896053774194671,0.842666520790511,0.340860645156116,0.519572009205738,0.70667914902068,1.97180787687353,0,0,7.11066703153331,0.216491041011214,0,0.505524445014783,1.37020655662872,0.517875767294343,0.742210695324124,0.520455980298408,0.913396434936424,0.922461989024234,0.60289056221049,0.117588707135705,1.13099932196708,1.48316980640624,0.289198713839823,0,0.970601099684455,1.10420759230197,1.45462575940567,0,3.80615036115011,2.51336048176146,0,1.43778149407104,0,0.508280908292259,3.59497534571574,1.83000241127451,2.63874139437015,0.869121600961382,2.30143911597297,2.90903262383384,1.62241263067758,1.73126918545538,1.24406970610093,1.0108910337347,1.26265113531884,0.910843100738926,1.14951052216736,1.26043490863744,1.9591626318643,1.90502197623718,2.17793324484245,2.24884138943349,1.55222022443409,2.58681591519411,0.945530400839096,2.63926686245923,0.43839146485515,1.66828349535359,0.348252166522167,1.64625709126355,0.995171334092466,0.702213187313235,0.51469581422943,0.852490498186778,0.828503090142008,1.64168241986767,1.80062061461015,2.13070262026689,1.96764231747404,1.85120535464854,2.09280550275367,1.60964040839772,2.80236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| ||
|EntrezGene=18749 | |||
|HGNC= | |||
|UniProt=P68181 | |||
|association_with_transcript=-28bp_to_ENSMUST00000102515_5end | |||
|description=CAGE_peak_11_at_Prkacb_5end | |||
|id=chr3:146475952..146475977,- | |||
|ontology_enrichment_celltype=CL:0000117!2.34e-12!23;CL:0000337!2.34e-12!23;CL:0000540!1.37e-08!33;CL:0000047!1.37e-08!33;CL:0000031!1.37e-08!33;CL:0000404!1.37e-08!33;CL:0000221!6.17e-08!44;CL:0000133!6.17e-08!44;CL:0002319!1.25e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.18e-13,23;CL:0000337,2.18e-13,23;CL:0000540,1.76e-08,33;CL:0000047,1.76e-08,33;CL:0000031,1.76e-08,33;CL:0000404,1.76e-08,33;CL:0000221,1.81e-07,44;CL:0000133,1.81e-07,44;CL:0002319,3.78e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.51e-14!75;UBERON:0001016!1.51e-14!75;UBERON:0001017!1.92e-14!73;UBERON:0005743!1.92e-14!73;UBERON:0001049!6.06e-14!52;UBERON:0005068!6.06e-14!52;UBERON:0006241!6.06e-14!52;UBERON:0007135!6.06e-14!52;UBERON:0004121!3.29e-12!102;UBERON:0000924!3.29e-12!102;UBERON:0006601!3.29e-12!102;UBERON:0000955!3.30e-12!50;UBERON:0006238!3.30e-12!50;UBERON:0002346!8.46e-12!71;UBERON:0003075!8.46e-12!71;UBERON:0007284!8.46e-12!71;UBERON:0000033!1.15e-11!63;UBERON:0002616!1.19e-11!49;UBERON:0007811!6.56e-11!86;UBERON:0000153!1.37e-10!94;UBERON:0002020!1.44e-09!34;UBERON:0003056!1.95e-09!49;UBERON:0003080!1.87e-08!40;UBERON:0002780!6.27e-08!39;UBERON:0001890!6.27e-08!39;UBERON:0006240!6.27e-08!39;UBERON:0000025!1.19e-07!114;UBERON:0003076!4.17e-07!12;UBERON:0003057!4.17e-07!12;UBERON:0002791!4.36e-07!29;UBERON:0003528!4.36e-07!29;UBERON:0001893!4.36e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.63e-15,64;UBERON:0003075,2.63e-15,64;UBERON:0007284,2.63e-15,64;UBERON:0000073,4.71e-15,54;UBERON:0001049,1.18e-14,52;UBERON:0005068,1.18e-14,52;UBERON:0006241,1.18e-14,52;UBERON:0007135,1.18e-14,52;UBERON:0001016,4.41e-14,75;UBERON:0010371,4.79e-14,73;UBERON:0004121,5.13e-14,95;UBERON:0000924,5.13e-14,95;UBERON:0006601,5.13e-14,95;UBERON:0001017,5.85e-14,73;UBERON:0010314,5.43e-13,92;UBERON:0000955,9.51e-12,47;UBERON:0006238,9.51e-12,47;UBERON:0002616,3.69e-11,46;UBERON:0002020,3.63e-10,34;UBERON:0003056,1.45e-09,49;UBERON:0003080,1.02e-08,40;UBERON:0002780,3.73e-08,39;UBERON:0001890,3.73e-08,39;UBERON:0006240,3.73e-08,39;UBERON:0003076,1.23e-07,12;UBERON:0003057,1.23e-07,12;UBERON:0003528,1.82e-07,29;UBERON:0002791,1.82e-07,29;UBERON:0001893,1.82e-07,29;UBERON:0000025,2.71e-07,114 | |||
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| |||
|short_description=p11@Prkacb | |||
}} |
Revision as of 01:47, 14 September 2013
Short description: | p11@Prkacb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_Prkacb_5end |
Coexpression cluster: | NA |
Association with transcript: | -28bp_to_ENSMUST00000102515_5end |
EntrezGene: | Prkacb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.18e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.18e-13 | 23 |
neuron | 1.76e-08 | 33 |
neuronal stem cell | 1.76e-08 | 33 |
neuroblast | 1.76e-08 | 33 |
electrically signaling cell | 1.76e-08 | 33 |
ectodermal cell | 1.81e-07 | 44 |
neurectodermal cell | 1.81e-07 | 44 |
neural cell | 3.78e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.63e-15 | 64 |
neural plate | 2.63e-15 | 64 |
presumptive neural plate | 2.63e-15 | 64 |
regional part of nervous system | 4.71e-15 | 54 |
neural tube | 1.18e-14 | 52 |
neural rod | 1.18e-14 | 52 |
future spinal cord | 1.18e-14 | 52 |
neural keel | 1.18e-14 | 52 |
nervous system | 4.41e-14 | 75 |
ecto-epithelium | 4.79e-14 | 73 |
ectoderm-derived structure | 5.13e-14 | 95 |
ectoderm | 5.13e-14 | 95 |
presumptive ectoderm | 5.13e-14 | 95 |
central nervous system | 5.85e-14 | 73 |
structure with developmental contribution from neural crest | 5.43e-13 | 92 |
brain | 9.51e-12 | 47 |
future brain | 9.51e-12 | 47 |
regional part of brain | 3.69e-11 | 46 |
gray matter | 3.63e-10 | 34 |
pre-chordal neural plate | 1.45e-09 | 49 |
anterior neural tube | 1.02e-08 | 40 |
regional part of forebrain | 3.73e-08 | 39 |
forebrain | 3.73e-08 | 39 |
future forebrain | 3.73e-08 | 39 |
posterior neural tube | 1.23e-07 | 12 |
chordal neural plate | 1.23e-07 | 12 |
brain grey matter | 1.82e-07 | 29 |
regional part of telencephalon | 1.82e-07 | 29 |
telencephalon | 1.82e-07 | 29 |
tube | 2.71e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.