FFCP PHASE1:Mm9::chr7:134072358..134072413,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=233877|HGNC=|MCL_coexpression_id=13|UniProt=Q8BGV7|association_with_transcript=0bp_to_ENSMUST00000032924,NM_172747,uc009jtm.1_5end|description=CAGE_peak_1_at_Kctd13_5end|id=chr7:134072358..134072413,+|ontology_enrichment_celltype=CL:0000117!5.44e-13!23;CL:0000337!5.44e-13!23;CL:0002319!4.59e-12!43;CL:0000221!4.77e-12!44;CL:0000133!4.77e-12!44;CL:0000540!5.22e-09!33;CL:0000047!5.22e-09!33;CL:0000031!5.22e-09!33;CL:0000404!5.22e-09!33;CL:0000055!6.67e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,5.44e-13,23;CL:0000337,5.44e-13,23;CL:0002319,4.59e-12,43;CL:0000221,4.77e-12,44;CL:0000133,4.77e-12,44;CL:0000540,5.22e-09,33;CL:0000047,5.22e-09,33;CL:0000031,5.22e-09,33;CL:0000404,5.22e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.80e-25!75;UBERON:0001016!1.80e-25!75;UBERON:0001017!6.48e-25!73;UBERON:0005743!6.48e-25!73;UBERON:0001049!3.00e-23!52;UBERON:0005068!3.00e-23!52;UBERON:0006241!3.00e-23!52;UBERON:0007135!3.00e-23!52;UBERON:0000955!2.07e-22!50;UBERON:0006238!2.07e-22!50;UBERON:0004121!2.08e-22!102;UBERON:0000924!2.08e-22!102;UBERON:0006601!2.08e-22!102;UBERON:0002346!5.36e-22!71;UBERON:0003075!5.36e-22!71;UBERON:0007284!5.36e-22!71;UBERON:0002616!6.99e-22!49;UBERON:0000033!7.63e-22!63;UBERON:0002020!1.68e-20!34;UBERON:0002791!4.04e-18!29;UBERON:0003528!4.04e-18!29;UBERON:0001893!4.04e-18!29;UBERON:0003056!8.64e-18!49;UBERON:0007811!9.96e-18!86;UBERON:0003080!2.16e-17!40;UBERON:0002780!8.16e-17!39;UBERON:0001890!8.16e-17!39;UBERON:0006240!8.16e-17!39;UBERON:0000153!7.20e-15!94;UBERON:0000956!2.67e-13!21;UBERON:0001869!2.67e-13!21;UBERON:0000203!2.67e-13!21;UBERON:0002619!3.86e-11!17;UBERON:0002021!7.61e-08!10;UBERON:0000411!7.61e-08!10;UBERON:0001950!7.61e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.80e-25,75;UBERON:0001017,6.48e-25,73;UBERON:0000073,1.73e-24,54;UBERON:0001049,3.00e-23,52;UBERON:0005068,3.00e-23,52;UBERON:0006241,3.00e-23,52;UBERON:0007135,3.00e-23,52;UBERON:0002346,6.15e-22,64;UBERON:0003075,6.15e-22,64;UBERON:0007284,6.15e-22,64;UBERON:0004121,7.19e-22,95;UBERON:0000924,7.19e-22,95;UBERON:0006601,7.19e-22,95;UBERON:0000955,1.11e-20,47;UBERON:0006238,1.11e-20,47;UBERON:0002020,1.68e-20,34;UBERON:0002616,3.67e-20,46;UBERON:0003528,4.04e-18,29;UBERON:0002791,4.04e-18,29;UBERON:0001893,4.04e-18,29;UBERON:0010371,7.64e-18,73;UBERON:0003056,8.64e-18,49;UBERON:0003080,2.16e-17,40;UBERON:0002780,8.16e-17,39;UBERON:0001890,8.16e-17,39;UBERON:0006240,8.16e-17,39;UBERON:0000956,2.67e-13,21;UBERON:0001869,2.67e-13,21;UBERON:0000203,2.67e-13,21;UBERON:0010314,1.19e-11,92;UBERON:0002619,3.86e-11,17;UBERON:0002021,7.61e-08,10;UBERON:0000411,7.61e-08,10;UBERON:0001950,7.61e-08,10|phase1_expression=10.7299727560212,8.72438519098403,8.18998630901165,15.4256747766483,17.5313505481222,7.38668796412315,8.64366770203445,18.3355119287038,6.335492496825,7.72412936862578,18.320322600129,20.0228119078294,17.9760766427766,17.1343988741235,7.66152452176024,6.68168382386426,5.59649502502517,17.5081501773822,15.0825876966313,17.3999757237192,35.6331385732982,9.53193131528499,8.61959304158487,5.91971964335605,6.8822784320151,6.31655160526522,9.90752591165872,9.26526300549323,6.46079626151671,7.30887376303799,7.31710685162506,13.3356441426523,12.3012957516914,15.8481681015439,6.64358725427932,6.31691652362271,7.75843553797003,14.6486070757918,13.2827008569046,9.42342739152837,12.9410927366823,15.7100461540443,17.4783727091215,5.91715044485213,6.38674666682942,10.8292583775392,25.8189143634853,28.7793206422189,22.6276768216506,17.3042610176112,14.278615005787,12.9377307928474,14.9326519391385,10.8804321301702,12.0993767691287,3.34437266846731,5.44413535883638,5.67239301505187,50.3767987540398,56.0730438028355,46.9035238594573,9.82649143000483,9.78224275722253,22.497492932035,23.7327927016074,20.6039233334369,22.7696083993988,39.5744854481201,45.4160501911132,50.3572149977206,45.0095417291958,47.7037143954352,40.1980744531937,49.4862828828414,51.5648634078112,38.6071890376209,47.3498288297371,53.3733073196085,44.6995011775669,54.8646956957606,62.8520111548554,50.007683573449,46.6235608332306,56.8390236131997,51.1874130052314,38.8909732825241,38.5827254965569,44.5494675522468,14.6151553133045,14.2074533000757,7.24661221754194,8.60423876981386,11.5595126730318,6.47643829965381,7.79731700937203,4.03224198387602,9.40977614882737,5.62420064507591,4.67614808285164,6.00677276667578,11.1266301623578,3.84979432242953,12.7402619853323,0,6.92771331235885,4.05375784760158,3.53867111510348,9.93399753555822,12.4290184150642,16.6255195752604,8.84775166507293,10.3518262626128,8.99400439298628,11.7563659631046,13.1699351991989,16.0853236901985,9.14621380617183,11.1341504828332,14.153768831198,6.63244084784378,6.8460870722722,1.93950101254089,7.45567044872489,40.110969190582,31.8358994356452,8.43008282188352,5.99075622529601,8.39863823390771,3.55796635804581,51.2283986764494,62.6775825861518,109.067977633966,76.1350522442171,89.756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| ||
|EntrezGene=233877 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=Q8BGV7 | |||
|association_with_transcript=0bp_to_ENSMUST00000032924,NM_172747,uc009jtm.1_5end | |||
|description=CAGE_peak_1_at_Kctd13_5end | |||
|id=chr7:134072358..134072413,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.44e-13!23;CL:0000337!5.44e-13!23;CL:0002319!4.59e-12!43;CL:0000221!4.77e-12!44;CL:0000133!4.77e-12!44;CL:0000540!5.22e-09!33;CL:0000047!5.22e-09!33;CL:0000031!5.22e-09!33;CL:0000404!5.22e-09!33;CL:0000055!6.67e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.44e-13,23;CL:0000337,5.44e-13,23;CL:0002319,4.59e-12,43;CL:0000221,4.77e-12,44;CL:0000133,4.77e-12,44;CL:0000540,5.22e-09,33;CL:0000047,5.22e-09,33;CL:0000031,5.22e-09,33;CL:0000404,5.22e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.80e-25!75;UBERON:0001016!1.80e-25!75;UBERON:0001017!6.48e-25!73;UBERON:0005743!6.48e-25!73;UBERON:0001049!3.00e-23!52;UBERON:0005068!3.00e-23!52;UBERON:0006241!3.00e-23!52;UBERON:0007135!3.00e-23!52;UBERON:0000955!2.07e-22!50;UBERON:0006238!2.07e-22!50;UBERON:0004121!2.08e-22!102;UBERON:0000924!2.08e-22!102;UBERON:0006601!2.08e-22!102;UBERON:0002346!5.36e-22!71;UBERON:0003075!5.36e-22!71;UBERON:0007284!5.36e-22!71;UBERON:0002616!6.99e-22!49;UBERON:0000033!7.63e-22!63;UBERON:0002020!1.68e-20!34;UBERON:0002791!4.04e-18!29;UBERON:0003528!4.04e-18!29;UBERON:0001893!4.04e-18!29;UBERON:0003056!8.64e-18!49;UBERON:0007811!9.96e-18!86;UBERON:0003080!2.16e-17!40;UBERON:0002780!8.16e-17!39;UBERON:0001890!8.16e-17!39;UBERON:0006240!8.16e-17!39;UBERON:0000153!7.20e-15!94;UBERON:0000956!2.67e-13!21;UBERON:0001869!2.67e-13!21;UBERON:0000203!2.67e-13!21;UBERON:0002619!3.86e-11!17;UBERON:0002021!7.61e-08!10;UBERON:0000411!7.61e-08!10;UBERON:0001950!7.61e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.80e-25,75;UBERON:0001017,6.48e-25,73;UBERON:0000073,1.73e-24,54;UBERON:0001049,3.00e-23,52;UBERON:0005068,3.00e-23,52;UBERON:0006241,3.00e-23,52;UBERON:0007135,3.00e-23,52;UBERON:0002346,6.15e-22,64;UBERON:0003075,6.15e-22,64;UBERON:0007284,6.15e-22,64;UBERON:0004121,7.19e-22,95;UBERON:0000924,7.19e-22,95;UBERON:0006601,7.19e-22,95;UBERON:0000955,1.11e-20,47;UBERON:0006238,1.11e-20,47;UBERON:0002020,1.68e-20,34;UBERON:0002616,3.67e-20,46;UBERON:0003528,4.04e-18,29;UBERON:0002791,4.04e-18,29;UBERON:0001893,4.04e-18,29;UBERON:0010371,7.64e-18,73;UBERON:0003056,8.64e-18,49;UBERON:0003080,2.16e-17,40;UBERON:0002780,8.16e-17,39;UBERON:0001890,8.16e-17,39;UBERON:0006240,8.16e-17,39;UBERON:0000956,2.67e-13,21;UBERON:0001869,2.67e-13,21;UBERON:0000203,2.67e-13,21;UBERON:0010314,1.19e-11,92;UBERON:0002619,3.86e-11,17;UBERON:0002021,7.61e-08,10;UBERON:0000411,7.61e-08,10;UBERON:0001950,7.61e-08,10 | |||
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| |||
|short_description=p1@Kctd13 | |||
}} |
Revision as of 11:51, 14 September 2013
Short description: | p1@Kctd13 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kctd13_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000032924, NM_172747, uc009jtm.1_5end |
EntrezGene: | Kctd13 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.44e-13 | 23 |
neuroblast (sensu Vertebrata) | 5.44e-13 | 23 |
neural cell | 4.59e-12 | 43 |
ectodermal cell | 4.77e-12 | 44 |
neurectodermal cell | 4.77e-12 | 44 |
neuron | 5.22e-09 | 33 |
neuronal stem cell | 5.22e-09 | 33 |
neuroblast | 5.22e-09 | 33 |
electrically signaling cell | 5.22e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.80e-25 | 75 |
central nervous system | 6.48e-25 | 73 |
regional part of nervous system | 1.73e-24 | 54 |
neural tube | 3.00e-23 | 52 |
neural rod | 3.00e-23 | 52 |
future spinal cord | 3.00e-23 | 52 |
neural keel | 3.00e-23 | 52 |
neurectoderm | 6.15e-22 | 64 |
neural plate | 6.15e-22 | 64 |
presumptive neural plate | 6.15e-22 | 64 |
ectoderm-derived structure | 7.19e-22 | 95 |
ectoderm | 7.19e-22 | 95 |
presumptive ectoderm | 7.19e-22 | 95 |
brain | 1.11e-20 | 47 |
future brain | 1.11e-20 | 47 |
gray matter | 1.68e-20 | 34 |
regional part of brain | 3.67e-20 | 46 |
brain grey matter | 4.04e-18 | 29 |
regional part of telencephalon | 4.04e-18 | 29 |
telencephalon | 4.04e-18 | 29 |
ecto-epithelium | 7.64e-18 | 73 |
pre-chordal neural plate | 8.64e-18 | 49 |
anterior neural tube | 2.16e-17 | 40 |
regional part of forebrain | 8.16e-17 | 39 |
forebrain | 8.16e-17 | 39 |
future forebrain | 8.16e-17 | 39 |
cerebral cortex | 2.67e-13 | 21 |
cerebral hemisphere | 2.67e-13 | 21 |
pallium | 2.67e-13 | 21 |
structure with developmental contribution from neural crest | 1.19e-11 | 92 |
regional part of cerebral cortex | 3.86e-11 | 17 |
occipital lobe | 7.61e-08 | 10 |
visual cortex | 7.61e-08 | 10 |
neocortex | 7.61e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.