FFCP PHASE1:Mm9::chr9:66643105..66643126,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=208117|HGNC=|MCL_coexpression_id=3|UniProt=|association_with_transcript=103bp_to_uc009qff.1_5end|description=CAGE_peak_5_at_Aph1b_5end|id=chr9:66643105..66643126,-|ontology_enrichment_celltype=CL:0000393!5.56e-12!39;CL:0000211!5.56e-12!39;CL:0000540!1.68e-11!33;CL:0000047!1.68e-11!33;CL:0000031!1.68e-11!33;CL:0000404!1.68e-11!33;CL:0000221!1.56e-10!44;CL:0000133!1.56e-10!44;CL:0002319!4.04e-10!43;CL:0000055!4.33e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.41e-14,33;CL:0000047,1.41e-14,33;CL:0000031,1.41e-14,33;CL:0000404,1.41e-14,33;CL:0000393,1.40e-13,39;CL:0000211,1.40e-13,39;CL:0000221,2.25e-11,44;CL:0000133,2.25e-11,44;CL:0000107,5.15e-11,9;CL:0002319,1.02e-10,43;CL:0000723,1.84e-07,91;CL:0000048,1.84e-07,91;CL:0002609,6.85e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.12e-16!75;UBERON:0001016!1.12e-16!75;UBERON:0001017!7.39e-16!73;UBERON:0005743!7.39e-16!73;UBERON:0004121!2.18e-14!102;UBERON:0000924!2.18e-14!102;UBERON:0006601!2.18e-14!102;UBERON:0002346!1.20e-11!71;UBERON:0003075!1.20e-11!71;UBERON:0007284!1.20e-11!71;UBERON:0001049!1.10e-10!52;UBERON:0005068!1.10e-10!52;UBERON:0006241!1.10e-10!52;UBERON:0007135!1.10e-10!52;UBERON:0000033!5.01e-10!63;UBERON:0000955!7.43e-09!50;UBERON:0006238!7.43e-09!50;UBERON:0002616!1.70e-08!49;UBERON:0002020!6.48e-08!34;UBERON:0003056!1.93e-07!49;UBERON:0000010!3.25e-07!11;UBERON:0003080!8.95e-07!40|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.51e-18,95;UBERON:0000924,3.51e-18,95;UBERON:0006601,3.51e-18,95;UBERON:0001016,3.80e-18,75;UBERON:0001017,1.11e-17,73;UBERON:0002346,3.61e-15,64;UBERON:0003075,3.61e-15,64;UBERON:0007284,3.61e-15,64;UBERON:0010371,8.97e-14,73;UBERON:0002410,5.15e-11,9;UBERON:0001049,7.33e-11,52;UBERON:0005068,7.33e-11,52;UBERON:0006241,7.33e-11,52;UBERON:0007135,7.33e-11,52;UBERON:0010314,7.34e-11,92;UBERON:0000010,9.83e-11,11;UBERON:0000955,7.30e-10,47;UBERON:0006238,7.30e-10,47;UBERON:0002020,1.66e-09,34;UBERON:0002616,2.77e-09,46;UBERON:0000073,3.19e-09,54;UBERON:0003056,8.71e-09,49;UBERON:0003528,1.16e-08,29;UBERON:0002791,1.16e-08,29;UBERON:0001893,1.16e-08,29;UBERON:0003080,3.43e-07,40;UBERON:0000956,3.80e-07,21;UBERON:0001869,3.80e-07,21;UBERON:0000203,3.80e-07,21;UBERON:0002780,9.03e-07,39;UBERON:0001890,9.03e-07,39;UBERON:0006240,9.03e-07,39|phase1_expression=1.12104192973356,0.348975407639361,0,0,0,0.16787927191189,0.467225281191051,0,0,0,0,0,0,0.0874204024189974,0,0.202475267389826,0.699561878128147,0.157731082679119,0,0,0.510259740906419,0.695036658406197,0,0,0,0,0,0,0,0.252030129759931,0,1.27006134691926,1.23012957516914,0,0.288851619751275,0,0.408338712524738,14.2300754450549,5.4693474116666,4.71171369576418,6.47054636834116,14.3439551841274,6.79714494243615,0.377690453926732,0.709638518536602,0.734187008646726,0.782391344348039,0.65407546914134,0.219686182734472,0.194429899074283,0.979904951377538,0,0.167782606057736,0,0,1.54355661621568,1.14613375975503,0.515672092277442,1.61853168687678,1.5869729378161,0.633831403506179,0.677689064138264,0.889294796111139,0.449949858640699,0,0.7104801149461,0.299600110518405,0.384218305321555,1.65903379693564,1.35005938331691,1.89292465216244,1.14260393761521,1.32521124570968,1.71487118900936,1.34183659425531,1.83843757322004,0,0.893811366596314,0.768032666281217,0.395658863190582,0.640413505216868,1.56274011167028,1.11673199600552,0.56276261003168,1.06958773443767,1.17851434189467,0.854230084794618,0.931997229126503,0.908714319998209,2.19157524309678,1.15945795480671,0,0,0.539703191637817,0,0,0.421333260395256,1.36344258062446,1.03914401841148,1.06001872353102,1.40843419776681,0,0,0,0,0.506719730950197,0.505524445014783,0.22836775943812,0,0.742210695324124,0.173485326766136,0.608930956624282,0.691846491768175,0.150722640552623,0.470354828542819,0,0.494389935468748,0.578397427679647,0,0,0.441683036920787,0,0,2.63502717310392,2.72280718857492,0,0.838705871541442,0.599902730993408,1.01656181658452,1.04853447583376,1.83000241127451,1.00523481690292,1.56441888173049,3.3243009452943,0.41557608911912,1.78465389374533,0.407357455401265,0.995255764880744,0.505445516867349,0,1.43132487258974,2.06911893990126,1.0803727788321,0.60281927134286,1.7009124787832,0.512454881139399,1.21812241927647,0,1.07783996466421,1.89106080167819,1.05570674498369,0.657587197282725,0.278047249225598,0.696504333044333,0.411564272815887,0.59710280045548,0,0.257347907114715,0.568326998791185,1.24275463521301,0.703578179943289,0.900310307305074,0.710234206755631,0.787056926989615,0.771335564436891,0.697601834251224,0.268273401399619,0.934122738937356,0.493679549740441,0.164167464079095,0.162137619091711,0.438599962275997,0.219550115291051,0.402619256281115,2.73376933133365,1.74937841044784,0,0,0.853153002140936,0.928946687441754,0.644337306610467,0,0,0.570676878337677,0,0.329397909448022,0.502670417600539,0.596869416123452,0.779856348476481,0,0.216138049874694,0,0.948339504765408,0.342745537829186,0,0,0.581857461502877,0.28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| ||
|EntrezGene=208117 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt= | |||
|association_with_transcript=103bp_to_uc009qff.1_5end | |||
|description=CAGE_peak_5_at_Aph1b_5end | |||
|id=chr9:66643105..66643126,- | |||
|ontology_enrichment_celltype=CL:0000393!5.56e-12!39;CL:0000211!5.56e-12!39;CL:0000540!1.68e-11!33;CL:0000047!1.68e-11!33;CL:0000031!1.68e-11!33;CL:0000404!1.68e-11!33;CL:0000221!1.56e-10!44;CL:0000133!1.56e-10!44;CL:0002319!4.04e-10!43;CL:0000055!4.33e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.41e-14,33;CL:0000047,1.41e-14,33;CL:0000031,1.41e-14,33;CL:0000404,1.41e-14,33;CL:0000393,1.40e-13,39;CL:0000211,1.40e-13,39;CL:0000221,2.25e-11,44;CL:0000133,2.25e-11,44;CL:0000107,5.15e-11,9;CL:0002319,1.02e-10,43;CL:0000723,1.84e-07,91;CL:0000048,1.84e-07,91;CL:0002609,6.85e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.12e-16!75;UBERON:0001016!1.12e-16!75;UBERON:0001017!7.39e-16!73;UBERON:0005743!7.39e-16!73;UBERON:0004121!2.18e-14!102;UBERON:0000924!2.18e-14!102;UBERON:0006601!2.18e-14!102;UBERON:0002346!1.20e-11!71;UBERON:0003075!1.20e-11!71;UBERON:0007284!1.20e-11!71;UBERON:0001049!1.10e-10!52;UBERON:0005068!1.10e-10!52;UBERON:0006241!1.10e-10!52;UBERON:0007135!1.10e-10!52;UBERON:0000033!5.01e-10!63;UBERON:0000955!7.43e-09!50;UBERON:0006238!7.43e-09!50;UBERON:0002616!1.70e-08!49;UBERON:0002020!6.48e-08!34;UBERON:0003056!1.93e-07!49;UBERON:0000010!3.25e-07!11;UBERON:0003080!8.95e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.51e-18,95;UBERON:0000924,3.51e-18,95;UBERON:0006601,3.51e-18,95;UBERON:0001016,3.80e-18,75;UBERON:0001017,1.11e-17,73;UBERON:0002346,3.61e-15,64;UBERON:0003075,3.61e-15,64;UBERON:0007284,3.61e-15,64;UBERON:0010371,8.97e-14,73;UBERON:0002410,5.15e-11,9;UBERON:0001049,7.33e-11,52;UBERON:0005068,7.33e-11,52;UBERON:0006241,7.33e-11,52;UBERON:0007135,7.33e-11,52;UBERON:0010314,7.34e-11,92;UBERON:0000010,9.83e-11,11;UBERON:0000955,7.30e-10,47;UBERON:0006238,7.30e-10,47;UBERON:0002020,1.66e-09,34;UBERON:0002616,2.77e-09,46;UBERON:0000073,3.19e-09,54;UBERON:0003056,8.71e-09,49;UBERON:0003528,1.16e-08,29;UBERON:0002791,1.16e-08,29;UBERON:0001893,1.16e-08,29;UBERON:0003080,3.43e-07,40;UBERON:0000956,3.80e-07,21;UBERON:0001869,3.80e-07,21;UBERON:0000203,3.80e-07,21;UBERON:0002780,9.03e-07,39;UBERON:0001890,9.03e-07,39;UBERON:0006240,9.03e-07,39 | |||
|phase1_expression=1.12104192973356,0.348975407639361,0,0,0,0.16787927191189,0.467225281191051,0,0,0,0,0,0,0.0874204024189974,0,0.202475267389826,0.699561878128147,0.157731082679119,0,0,0.510259740906419,0.695036658406197,0,0,0,0,0,0,0,0.252030129759931,0,1.27006134691926,1.23012957516914,0,0.288851619751275,0,0.408338712524738,14.2300754450549,5.4693474116666,4.71171369576418,6.47054636834116,14.3439551841274,6.79714494243615,0.377690453926732,0.709638518536602,0.734187008646726,0.782391344348039,0.65407546914134,0.219686182734472,0.194429899074283,0.979904951377538,0,0.167782606057736,0,0,1.54355661621568,1.14613375975503,0.515672092277442,1.61853168687678,1.5869729378161,0.633831403506179,0.677689064138264,0.889294796111139,0.449949858640699,0,0.7104801149461,0.299600110518405,0.384218305321555,1.65903379693564,1.35005938331691,1.89292465216244,1.14260393761521,1.32521124570968,1.71487118900936,1.34183659425531,1.83843757322004,0,0.893811366596314,0.768032666281217,0.395658863190582,0.640413505216868,1.56274011167028,1.11673199600552,0.56276261003168,1.06958773443767,1.17851434189467,0.854230084794618,0.931997229126503,0.908714319998209,2.19157524309678,1.15945795480671,0,0,0.539703191637817,0,0,0.421333260395256,1.36344258062446,1.03914401841148,1.06001872353102,1.40843419776681,0,0,0,0,0.506719730950197,0.505524445014783,0.22836775943812,0,0.742210695324124,0.173485326766136,0.608930956624282,0.691846491768175,0.150722640552623,0.470354828542819,0,0.494389935468748,0.578397427679647,0,0,0.441683036920787,0,0,2.63502717310392,2.72280718857492,0,0.838705871541442,0.599902730993408,1.01656181658452,1.04853447583376,1.83000241127451,1.00523481690292,1.56441888173049,3.3243009452943,0.41557608911912,1.78465389374533,0.407357455401265,0.995255764880744,0.505445516867349,0,1.43132487258974,2.06911893990126,1.0803727788321,0.60281927134286,1.7009124787832,0.512454881139399,1.21812241927647,0,1.07783996466421,1.89106080167819,1.05570674498369,0.657587197282725,0.278047249225598,0.696504333044333,0.411564272815887,0.59710280045548,0,0.257347907114715,0.568326998791185,1.24275463521301,0.703578179943289,0.900310307305074,0.710234206755631,0.787056926989615,0.771335564436891,0.697601834251224,0.268273401399619,0.934122738937356,0.493679549740441,0.164167464079095,0.162137619091711,0.438599962275997,0.219550115291051,0.402619256281115,2.73376933133365,1.74937841044784,0,0,0.853153002140936,0.928946687441754,0.644337306610467,0,0,0.570676878337677,0,0.329397909448022,0.502670417600539,0.596869416123452,0.779856348476481,0,0.216138049874694,0,0.948339504765408,0.342745537829186,0,0,0.581857461502877,0.280543279561274,0.822074982615345,0.295220295959204,0.784993639206874,1.48076596706161,0,0.166845105716094,0,0.224862112384854,0,0.241177159752417,0,0,0.324270453550071,0.274561413188081,1.43768206527355,2.23284568601102,0.312037673114561,0,0.179397413521912,1.92977408545347,0.184753190166605,0.757965647081939,0.977789858652155,0.339490171550376,0.938760993154008,0.670025029767263,0,0.390267295715598,0.157635144106191,1.10732344824387,0.318909537314974,0.327726629431476,0,0.578596234326046,0,1.63171705145613,0,0,2.88991061978026,1.17211686592203,0,0,4.10160685241134,2.73307121007647,2.15423397732799,3.58453196928828,1.78238939265915,1.13230612315533,3.64329631507405,2.63030272120181,1.58115111178609,1.28528526568723,0.99358059645788,0.178065603667255,0.488660878060728,0.164970122972535,0,0.728341908464944,0.302323556964751,0.377210159511796,0,0,0,0.727067458955011,0.356497378384721,0,0,1.03135543248187,1.02131881726136,0.720244376125241,0.905510786479282,0.428674070063185,0.177340233642274,0.713475270408282,0.493647061806363,0.304464949114599,0.23467170806371,0.63549621259146,0.661585194164886,0.32977250588296,0.645857706783622,0.120625849856312,0.477489376012546,0.492422699235184,0,1.48340241608408,0,0.206386867963223,0.185194527369712,0.753473828018764,0.136694227721025,0,0.679913719975421,0.839708713941948,0,0,0.949007980743406,0.203319467126849,0.540026704109006,0.418176592028937,0.436725127492355,0.539457385539283,0.495920734352016,0.26175594198403,0.388844919875379,1.24267862617385,0.56369293868419,0.448549638131936,0.330916980914195,0.194451188344048,0.387479470433193,0.337912250981556,0.58678619322877,0.13020438484395,0.314578033277133,0.483168241652012,0,0,0.810900861160657,0.205421914329655,0.25984164595559,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0,0.116876902181569,0,0.665957860122194,0,0.335769232728157,0.579568782096571,1.50145980360946,0.915758121336325,0.214368379079066,0.501572104035363,0.564751842617067,0,2.29158205375759,1.20297227640581,0.685082519770642,2.2661816921691,2.02506750069542,0.45032120322422,0.453142408984205,0.51776031175182,1.3492355185943,0.798049746802062,0.341467211508268,0.972426868273176,0.209613162627982,0,0,0.824140228955577,0,0.505394423527595,0.25347929989024,0.188626341386076,0.749132059759059,0.192075457214608,0.402048282689293,0,0.695305955669133,0.192909220463705,0,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| |||
|short_description=p5@Aph1b | |||
}} |
Revision as of 18:34, 14 September 2013
Short description: | p5@Aph1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Aph1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 103bp_to_uc009qff.1_5end |
EntrezGene: | Aph1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.41e-14 | 33 |
neuronal stem cell | 1.41e-14 | 33 |
neuroblast | 1.41e-14 | 33 |
electrically signaling cell | 1.41e-14 | 33 |
electrically responsive cell | 1.40e-13 | 39 |
electrically active cell | 1.40e-13 | 39 |
ectodermal cell | 2.25e-11 | 44 |
neurectodermal cell | 2.25e-11 | 44 |
autonomic neuron | 5.15e-11 | 9 |
neural cell | 1.02e-10 | 43 |
somatic stem cell | 1.84e-07 | 91 |
multi fate stem cell | 1.84e-07 | 91 |
neuron of cerebral cortex | 6.85e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.51e-18 | 95 |
ectoderm | 3.51e-18 | 95 |
presumptive ectoderm | 3.51e-18 | 95 |
nervous system | 3.80e-18 | 75 |
central nervous system | 1.11e-17 | 73 |
neurectoderm | 3.61e-15 | 64 |
neural plate | 3.61e-15 | 64 |
presumptive neural plate | 3.61e-15 | 64 |
ecto-epithelium | 8.97e-14 | 73 |
autonomic nervous system | 5.15e-11 | 9 |
neural tube | 7.33e-11 | 52 |
neural rod | 7.33e-11 | 52 |
future spinal cord | 7.33e-11 | 52 |
neural keel | 7.33e-11 | 52 |
structure with developmental contribution from neural crest | 7.34e-11 | 92 |
peripheral nervous system | 9.83e-11 | 11 |
brain | 7.30e-10 | 47 |
future brain | 7.30e-10 | 47 |
gray matter | 1.66e-09 | 34 |
regional part of brain | 2.77e-09 | 46 |
regional part of nervous system | 3.19e-09 | 54 |
pre-chordal neural plate | 8.71e-09 | 49 |
brain grey matter | 1.16e-08 | 29 |
regional part of telencephalon | 1.16e-08 | 29 |
telencephalon | 1.16e-08 | 29 |
anterior neural tube | 3.43e-07 | 40 |
cerebral cortex | 3.80e-07 | 21 |
cerebral hemisphere | 3.80e-07 | 21 |
pallium | 3.80e-07 | 21 |
regional part of forebrain | 9.03e-07 | 39 |
forebrain | 9.03e-07 | 39 |
future forebrain | 9.03e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.