FFCP PHASE1:Mm9::chr1:66370521..66370559,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=158|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:66370521..66370559,+|id=chr1:66370521..66370559,+|ontology_enrichment_celltype=CL:0000540!7.68e-08!33;CL:0000047!7.68e-08!33;CL:0000031!7.68e-08!33;CL:0000404!7.68e-08!33;CL:0000117!3.45e-07!23;CL:0000337!3.45e-07!23|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!5.05e-23!63;UBERON:0004121!2.01e-21!102;UBERON:0000924!2.01e-21!102;UBERON:0006601!2.01e-21!102;UBERON:0003056!2.06e-21!49;UBERON:0002346!5.43e-21!71;UBERON:0003075!5.43e-21!71;UBERON:0007284!5.43e-21!71;UBERON:0001017!5.90e-19!73;UBERON:0005743!5.90e-19!73;UBERON:0000955!8.17e-19!50;UBERON:0006238!8.17e-19!50;UBERON:0001049!1.88e-18!52;UBERON:0005068!1.88e-18!52;UBERON:0006241!1.88e-18!52;UBERON:0007135!1.88e-18!52;UBERON:0000073!1.90e-18!75;UBERON:0001016!1.90e-18!75;UBERON:0002616!4.41e-18!49;UBERON:0003080!1.74e-16!40;UBERON:0002780!7.06e-16!39;UBERON:0001890!7.06e-16!39;UBERON:0006240!7.06e-16!39;UBERON:0002020!9.78e-15!34;UBERON:0002791!1.08e-14!29;UBERON:0003528!1.08e-14!29;UBERON:0001893!1.08e-14!29;UBERON:0000153!1.43e-13!94;UBERON:0007811!2.24e-13!86;UBERON:0000956!9.91e-12!21;UBERON:0001869!9.91e-12!21;UBERON:0000203!9.91e-12!21;UBERON:0002619!2.06e-09!17;UBERON:0002021!3.18e-09!10;UBERON:0000411!3.18e-09!10;UBERON:0001950!3.18e-09!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.03e-25,64;UBERON:0003075,2.03e-25,64;UBERON:0007284,2.03e-25,64;UBERON:0003056,6.41e-25,49;UBERON:0004121,1.49e-22,95;UBERON:0000924,1.49e-22,95;UBERON:0006601,1.49e-22,95;UBERON:0000073,5.67e-22,54;UBERON:0000955,1.36e-21,47;UBERON:0006238,1.36e-21,47;UBERON:0010371,1.65e-21,73;UBERON:0001017,3.02e-21,73;UBERON:0001049,5.67e-21,52;UBERON:0005068,5.67e-21,52;UBERON:0006241,5.67e-21,52;UBERON:0007135,5.67e-21,52;UBERON:0001016,1.64e-20,75;UBERON:0002021,2.03e-20,10;UBERON:0000411,2.03e-20,10;UBERON:0001950,2.03e-20,10;UBERON:0002616,5.09e-20,46;UBERON:0003528,8.92e-20,29;UBERON:0002791,8.92e-20,29;UBERON:0001893,8.92e-20,29;UBERON:0002780,1.24e-19,39;UBERON:0001890,1.24e-19,39;UBERON:0006240,1.24e-19,39;UBERON:0003080,5.00e-19,40;UBERON:0000956,1.48e-18,21;UBERON:0001869,1.48e-18,21;UBERON:0000203,1.48e-18,21;UBERON:0002020,1.83e-18,34;UBERON:0002619,4.45e-17,17;UBERON:0010314,9.12e-16,92|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515672092277442,0.809265843438391,1.5869729378161,0,0,0,0,0,0,0,0,2.07379224616955,0.810035629990144,0.630974884054146,0,0,0.734944795289724,0.0958454710182364,2.75765635983006,0,1.14918604276669,2.61131106535614,0.791317726381163,0.457438218012048,1.56274011167028,0,0.56276261003168,2.13917546887534,0.883885756421003,0.711858403995515,1.3047961207771,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0.753613202763113,0.23517741427141,0,0,0,0,0.161766849947409,0,0,0,1.75668478206928,2.09446706813455,0,0,0,0,0.898743836428936,0.457500602818626,4.52355667606312,1.04294592115366,1.02286182932132,1.24672826735736,1.78465389374533,0,0,0,0.420883711772948,0.780722657776222,0.229902104433473,0.180062129805349,1.80845781402858,1.63287597963187,2.69038812598185,1.21812241927647,2.06962696591213,0.215567992932842,0.378212160335639,0,0,0.556094498451196,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0.492502392237286,0,0,0,0,0.841159794256509,2.6755199218614,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420814919341911,0.252946148497029,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0.509235257325564,0,0,0,0,0,0,0,0,0.345369963731791,0.289298117163023,0,0,0.491764273019036,0.275936746304732,0.321101179975584,0.937693492737625,0,0,0,0.390438744296638,0.646270193198397,0.238968797952552,0.222798674082394,0,0.809621403349789,1.16902343164525,0.395287777946524,1.60660658210904,0,0,0,0,0,0.242780636154981,0,0.565815239267694,0,0.307435147943927,0.775284879504663,0,0,0.316036757935816,0,0,1.02131881726136,0.900305470156551,0,0.214337035031592,0,0.713475270408282,0.658196082408484,0,0,0,0,0.32977250588296,0.161464426695906,0.120625849856312,0,0,0,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0.203319467126849,0.108005340821801,0.836353184057875,0.87345025498471,0.404593039154462,0.0826534557253359,0,0.129614973291793,0.621339313086926,0,0.149516546043979,0,0,0,0.506868376472335,0.821500670520278,0.5208175393758,0.104859344425711,0.724752362478018,0.288030006257865,0,0,0,0,0.179026695667481,0,0.240390899039938,0.147689527174577,0.100966449948148,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,3.95326289831947,2.76195141904306,1.14579102687879,3.09335728218638,0.685082519770642,3.0215755895588,1.35004500046361,2.70192721934532,4.53142408984205,3.624322182262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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=158 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:66370521..66370559,+ | |||
|id=chr1:66370521..66370559,+ | |||
|ontology_enrichment_celltype=CL:0000540!7.68e-08!33;CL:0000047!7.68e-08!33;CL:0000031!7.68e-08!33;CL:0000404!7.68e-08!33;CL:0000117!3.45e-07!23;CL:0000337!3.45e-07!23 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!5.05e-23!63;UBERON:0004121!2.01e-21!102;UBERON:0000924!2.01e-21!102;UBERON:0006601!2.01e-21!102;UBERON:0003056!2.06e-21!49;UBERON:0002346!5.43e-21!71;UBERON:0003075!5.43e-21!71;UBERON:0007284!5.43e-21!71;UBERON:0001017!5.90e-19!73;UBERON:0005743!5.90e-19!73;UBERON:0000955!8.17e-19!50;UBERON:0006238!8.17e-19!50;UBERON:0001049!1.88e-18!52;UBERON:0005068!1.88e-18!52;UBERON:0006241!1.88e-18!52;UBERON:0007135!1.88e-18!52;UBERON:0000073!1.90e-18!75;UBERON:0001016!1.90e-18!75;UBERON:0002616!4.41e-18!49;UBERON:0003080!1.74e-16!40;UBERON:0002780!7.06e-16!39;UBERON:0001890!7.06e-16!39;UBERON:0006240!7.06e-16!39;UBERON:0002020!9.78e-15!34;UBERON:0002791!1.08e-14!29;UBERON:0003528!1.08e-14!29;UBERON:0001893!1.08e-14!29;UBERON:0000153!1.43e-13!94;UBERON:0007811!2.24e-13!86;UBERON:0000956!9.91e-12!21;UBERON:0001869!9.91e-12!21;UBERON:0000203!9.91e-12!21;UBERON:0002619!2.06e-09!17;UBERON:0002021!3.18e-09!10;UBERON:0000411!3.18e-09!10;UBERON:0001950!3.18e-09!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.03e-25,64;UBERON:0003075,2.03e-25,64;UBERON:0007284,2.03e-25,64;UBERON:0003056,6.41e-25,49;UBERON:0004121,1.49e-22,95;UBERON:0000924,1.49e-22,95;UBERON:0006601,1.49e-22,95;UBERON:0000073,5.67e-22,54;UBERON:0000955,1.36e-21,47;UBERON:0006238,1.36e-21,47;UBERON:0010371,1.65e-21,73;UBERON:0001017,3.02e-21,73;UBERON:0001049,5.67e-21,52;UBERON:0005068,5.67e-21,52;UBERON:0006241,5.67e-21,52;UBERON:0007135,5.67e-21,52;UBERON:0001016,1.64e-20,75;UBERON:0002021,2.03e-20,10;UBERON:0000411,2.03e-20,10;UBERON:0001950,2.03e-20,10;UBERON:0002616,5.09e-20,46;UBERON:0003528,8.92e-20,29;UBERON:0002791,8.92e-20,29;UBERON:0001893,8.92e-20,29;UBERON:0002780,1.24e-19,39;UBERON:0001890,1.24e-19,39;UBERON:0006240,1.24e-19,39;UBERON:0003080,5.00e-19,40;UBERON:0000956,1.48e-18,21;UBERON:0001869,1.48e-18,21;UBERON:0000203,1.48e-18,21;UBERON:0002020,1.83e-18,34;UBERON:0002619,4.45e-17,17;UBERON:0010314,9.12e-16,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515672092277442,0.809265843438391,1.5869729378161,0,0,0,0,0,0,0,0,2.07379224616955,0.810035629990144,0.630974884054146,0,0,0.734944795289724,0.0958454710182364,2.75765635983006,0,1.14918604276669,2.61131106535614,0.791317726381163,0.457438218012048,1.56274011167028,0,0.56276261003168,2.13917546887534,0.883885756421003,0.711858403995515,1.3047961207771,0,0.0755715601067855,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0.753613202763113,0.23517741427141,0,0,0,0,0.161766849947409,0,0,0,1.75668478206928,2.09446706813455,0,0,0,0,0.898743836428936,0.457500602818626,4.52355667606312,1.04294592115366,1.02286182932132,1.24672826735736,1.78465389374533,0,0,0,0.420883711772948,0.780722657776222,0.229902104433473,0.180062129805349,1.80845781402858,1.63287597963187,2.69038812598185,1.21812241927647,2.06962696591213,0.215567992932842,0.378212160335639,0,0,0.556094498451196,0.348252166522167,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0.492502392237286,0,0,0,0,0.841159794256509,2.6755199218614,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420814919341911,0.252946148497029,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0.509235257325564,0,0,0,0,0,0,0,0,0.345369963731791,0.289298117163023,0,0,0.491764273019036,0.275936746304732,0.321101179975584,0.937693492737625,0,0,0,0.390438744296638,0.646270193198397,0.238968797952552,0.222798674082394,0,0.809621403349789,1.16902343164525,0.395287777946524,1.60660658210904,0,0,0,0,0,0.242780636154981,0,0.565815239267694,0,0.307435147943927,0.775284879504663,0,0,0.316036757935816,0,0,1.02131881726136,0.900305470156551,0,0.214337035031592,0,0.713475270408282,0.658196082408484,0,0,0,0,0.32977250588296,0.161464426695906,0.120625849856312,0,0,0,1.66882771809459,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0.203319467126849,0.108005340821801,0.836353184057875,0.87345025498471,0.404593039154462,0.0826534557253359,0,0.129614973291793,0.621339313086926,0,0.149516546043979,0,0,0,0.506868376472335,0.821500670520278,0.5208175393758,0.104859344425711,0.724752362478018,0.288030006257865,0,0,0,0,0.179026695667481,0,0.240390899039938,0.147689527174577,0.100966449948148,0,0,0,0,0,0.226730383615211,0,0,0,0,0,0,0,0,3.95326289831947,2.76195141904306,1.14579102687879,3.09335728218638,0.685082519770642,3.0215755895588,1.35004500046361,2.70192721934532,4.53142408984205,3.62432218226274,0,1.19707462020309,0.341467211508268,0.243106717068294,0,0.183843508450014,0.44449345560323,0.824140228955577,0.64183841918363,0,0.25347929989024,0.754505365544305,0.749132059759059,0.320125762024346,0.402048282689293,0.952587382566147,0.347652977834566,0.38581844092741,0,0.147198920134397,0.685738504770831,0.887379030796687,1.43061713968393,0.290692833264657,0.376437521661322,0.761531471025089,1.28049581010941,0.263069711437843,0.271608227691724,0,0.237270036248348,0.591026894253381,0.818462086339379,0.619747364743864,0,0,0.467863216890817,0,0,0,0 | |||
|short_description=p@chr1:66370521..66370559,+ | |||
}} |
Revision as of 20:45, 13 September 2013
Short description: | p@chr1:66370521..66370559, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:66370521..66370559, + |
Coexpression cluster: | MCL_coexpression_mm9:158 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.03e-25 | 64 |
neural plate | 2.03e-25 | 64 |
presumptive neural plate | 2.03e-25 | 64 |
pre-chordal neural plate | 6.41e-25 | 49 |
ectoderm-derived structure | 1.49e-22 | 95 |
ectoderm | 1.49e-22 | 95 |
presumptive ectoderm | 1.49e-22 | 95 |
regional part of nervous system | 5.67e-22 | 54 |
brain | 1.36e-21 | 47 |
future brain | 1.36e-21 | 47 |
ecto-epithelium | 1.65e-21 | 73 |
central nervous system | 3.02e-21 | 73 |
neural tube | 5.67e-21 | 52 |
neural rod | 5.67e-21 | 52 |
future spinal cord | 5.67e-21 | 52 |
neural keel | 5.67e-21 | 52 |
nervous system | 1.64e-20 | 75 |
occipital lobe | 2.03e-20 | 10 |
visual cortex | 2.03e-20 | 10 |
neocortex | 2.03e-20 | 10 |
regional part of brain | 5.09e-20 | 46 |
brain grey matter | 8.92e-20 | 29 |
regional part of telencephalon | 8.92e-20 | 29 |
telencephalon | 8.92e-20 | 29 |
regional part of forebrain | 1.24e-19 | 39 |
forebrain | 1.24e-19 | 39 |
future forebrain | 1.24e-19 | 39 |
anterior neural tube | 5.00e-19 | 40 |
cerebral cortex | 1.48e-18 | 21 |
cerebral hemisphere | 1.48e-18 | 21 |
pallium | 1.48e-18 | 21 |
gray matter | 1.83e-18 | 34 |
regional part of cerebral cortex | 4.45e-17 | 17 |
structure with developmental contribution from neural crest | 9.12e-16 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.