FFCP PHASE1:Mm9::chrX:133527686..133527755,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66995|HGNC=|MCL_coexpression_id=1|UniProt=Q8VD24|association_with_transcript=0bp_to_ENSMUST00000101227,ENSMUST00000113067,NM_001035509,NM_001035510,NM_025893,uc009ujk.1,uc009ujl.1,uc009ujm.1_5end|description=CAGE_peak_1_at_Zcchc18_5end|id=chrX:133527686..133527755,+|ontology_enrichment_celltype=CL:0000221!8.67e-15!44;CL:0000133!8.67e-15!44;CL:0002319!2.35e-14!43;CL:0000117!7.71e-14!23;CL:0000337!7.71e-14!23;CL:0000540!1.50e-13!33;CL:0000047!1.50e-13!33;CL:0000031!1.50e-13!33;CL:0000404!1.50e-13!33;CL:0000055!2.27e-12!50;CL:0000393!3.91e-12!39;CL:0000211!3.91e-12!39|ontology_enrichment_celltype_v019_2=CL:0000221,6.25e-15,44;CL:0000133,6.25e-15,44;CL:0000117,1.16e-14,23;CL:0000337,1.16e-14,23;CL:0002319,1.79e-14,43;CL:0000540,2.36e-14,33;CL:0000047,2.36e-14,33;CL:0000031,2.36e-14,33;CL:0000404,2.36e-14,33;CL:0000393,6.29e-13,39;CL:0000211,6.29e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.57e-34!73;UBERON:0005743!3.57e-34!73;UBERON:0000073!1.60e-33!75;UBERON:0001016!1.60e-33!75;UBERON:0002346!4.52e-30!71;UBERON:0003075!4.52e-30!71;UBERON:0007284!4.52e-30!71;UBERON:0004121!3.49e-28!102;UBERON:0000924!3.49e-28!102;UBERON:0006601!3.49e-28!102;UBERON:0001049!5.57e-28!52;UBERON:0005068!5.57e-28!52;UBERON:0006241!5.57e-28!52;UBERON:0007135!5.57e-28!52;UBERON:0000033!1.35e-27!63;UBERON:0000955!8.29e-27!50;UBERON:0006238!8.29e-27!50;UBERON:0002616!3.28e-26!49;UBERON:0003056!9.54e-24!49;UBERON:0003080!5.96e-22!40;UBERON:0002780!3.38e-21!39;UBERON:0001890!3.38e-21!39;UBERON:0006240!3.38e-21!39;UBERON:0002020!1.01e-19!34;UBERON:0002791!1.24e-16!29;UBERON:0003528!1.24e-16!29;UBERON:0001893!1.24e-16!29;UBERON:0000153!1.67e-14!94;UBERON:0007811!2.92e-14!86;UBERON:0000956!5.74e-12!21;UBERON:0001869!5.74e-12!21;UBERON:0000203!5.74e-12!21;UBERON:0002619!4.92e-10!17;UBERON:0002021!4.07e-07!10;UBERON:0000411!4.07e-07!10;UBERON:0001950!4.07e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.23e-36,73;UBERON:0001016,9.67e-35,75;UBERON:0002346,7.38e-32,64;UBERON:0003075,7.38e-32,64;UBERON:0007284,7.38e-32,64;UBERON:0000073,5.05e-31,54;UBERON:0001049,2.64e-29,52;UBERON:0005068,2.64e-29,52;UBERON:0006241,2.64e-29,52;UBERON:0007135,2.64e-29,52;UBERON:0004121,4.36e-29,95;UBERON:0000924,4.36e-29,95;UBERON:0006601,4.36e-29,95;UBERON:0010371,4.95e-26,73;UBERON:0000955,1.26e-25,47;UBERON:0006238,1.26e-25,47;UBERON:0003056,3.09e-25,49;UBERON:0002616,5.28e-25,46;UBERON:0003080,2.55e-23,40;UBERON:0002780,1.63e-22,39;UBERON:0001890,1.63e-22,39;UBERON:0006240,1.63e-22,39;UBERON:0002020,6.10e-21,34;UBERON:0010314,1.95e-19,92;UBERON:0003528,1.21e-17,29;UBERON:0002791,1.21e-17,29;UBERON:0001893,1.21e-17,29;UBERON:0000956,1.15e-12,21;UBERON:0001869,1.15e-12,21;UBERON:0000203,1.15e-12,21;UBERON:0002619,1.33e-10,17;UBERON:0002021,1.72e-07,10;UBERON:0000411,1.72e-07,10;UBERON:0001950,1.72e-07,10|phase1_expression=24.9832201483479,0,0,0,0,0,0,3.22808308603941,0.140788722151667,0.234064526321993,0.171217968225505,0,0.171200729931206,0.34968160967599,0.999329285446988,3.03712901084739,0,7.72882305127682,6.99283611389268,10.1853516431527,23.6420346619974,0,0,0.799962113967033,0.45881856213434,0,0,0,0,0.504060259519861,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,8.81277725829041,8.61703915365874,5.50640256485045,0.782391344348039,6.75877984779384,12.0827400503959,11.4713640453827,4.4795654920116,7.18762821824858,3.35565212115473,0,1.00828139742739,0,0.286533439938757,1.54701627683233,52.804596284355,67.1818543675482,50.0726808769882,0.677689064138264,0.889294796111139,0,0,0.7104801149461,11.085204089181,16.5213871288268,32.9732967140959,48.0621140460819,40.5927175408167,117.973856558771,118.606406491016,38.7070925519255,37.5714246391487,45.041720543891,159.668027449114,132.41176959434,152.070467923681,59.216943190857,60.3818447775904,49.4867702028922,165.83470140682,191.902050020803,159.826967174543,95.4596616934683,95.8161411777963,52.7510431685601,0.984440513331393,2.94729084416464,0.289864488701678,0,0,0.539703191637817,0,0,4.49422144421606,0,0,0,19.0138616698519,0,0,0,0,0.253359865475099,0,5.1382745873577,5.95557132388495,8.31275978763019,2.25530924795977,4.56698217468212,2.07553947530453,4.6724018571313,4.35078216402108,2.89033160058254,0,0.433798070759735,0,0.647067399789637,0,0.969750506270444,0,67.3395833126558,56.3411641328194,0.510914110417183,0.838705871541442,0,0,165.219075263519,60.3900795720587,54.9109518733217,114.028754046133,97.9390201575166,115.737940819675,107.890439940059,1.52759045775474,1.36847667671102,4.29628689337247,7.36546495602659,5.20481771850815,5.9774547152703,3.60124259610698,6.48030716693575,8.98081788797528,11.5302348256365,10.1197862524507,16.039608985819,3.44908788692548,4.9167580843633,4.57472922826267,2.41115305670332,2.50242524303038,2.089512999133,1.4404749548556,1.59227413454795,0,0,0,0.621377317606506,1.40715635988658,1.44049649168812,0.710234206755631,0.393528463494808,0.154267112887378,0.232533944750408,1.07309360559848,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| ||
|EntrezGene=66995 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8VD24 | |||
|association_with_transcript=0bp_to_ENSMUST00000101227,ENSMUST00000113067,NM_001035509,NM_001035510,NM_025893,uc009ujk.1,uc009ujl.1,uc009ujm.1_5end | |||
|description=CAGE_peak_1_at_Zcchc18_5end | |||
|id=chrX:133527686..133527755,+ | |||
|ontology_enrichment_celltype=CL:0000221!8.67e-15!44;CL:0000133!8.67e-15!44;CL:0002319!2.35e-14!43;CL:0000117!7.71e-14!23;CL:0000337!7.71e-14!23;CL:0000540!1.50e-13!33;CL:0000047!1.50e-13!33;CL:0000031!1.50e-13!33;CL:0000404!1.50e-13!33;CL:0000055!2.27e-12!50;CL:0000393!3.91e-12!39;CL:0000211!3.91e-12!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.25e-15,44;CL:0000133,6.25e-15,44;CL:0000117,1.16e-14,23;CL:0000337,1.16e-14,23;CL:0002319,1.79e-14,43;CL:0000540,2.36e-14,33;CL:0000047,2.36e-14,33;CL:0000031,2.36e-14,33;CL:0000404,2.36e-14,33;CL:0000393,6.29e-13,39;CL:0000211,6.29e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.57e-34!73;UBERON:0005743!3.57e-34!73;UBERON:0000073!1.60e-33!75;UBERON:0001016!1.60e-33!75;UBERON:0002346!4.52e-30!71;UBERON:0003075!4.52e-30!71;UBERON:0007284!4.52e-30!71;UBERON:0004121!3.49e-28!102;UBERON:0000924!3.49e-28!102;UBERON:0006601!3.49e-28!102;UBERON:0001049!5.57e-28!52;UBERON:0005068!5.57e-28!52;UBERON:0006241!5.57e-28!52;UBERON:0007135!5.57e-28!52;UBERON:0000033!1.35e-27!63;UBERON:0000955!8.29e-27!50;UBERON:0006238!8.29e-27!50;UBERON:0002616!3.28e-26!49;UBERON:0003056!9.54e-24!49;UBERON:0003080!5.96e-22!40;UBERON:0002780!3.38e-21!39;UBERON:0001890!3.38e-21!39;UBERON:0006240!3.38e-21!39;UBERON:0002020!1.01e-19!34;UBERON:0002791!1.24e-16!29;UBERON:0003528!1.24e-16!29;UBERON:0001893!1.24e-16!29;UBERON:0000153!1.67e-14!94;UBERON:0007811!2.92e-14!86;UBERON:0000956!5.74e-12!21;UBERON:0001869!5.74e-12!21;UBERON:0000203!5.74e-12!21;UBERON:0002619!4.92e-10!17;UBERON:0002021!4.07e-07!10;UBERON:0000411!4.07e-07!10;UBERON:0001950!4.07e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.23e-36,73;UBERON:0001016,9.67e-35,75;UBERON:0002346,7.38e-32,64;UBERON:0003075,7.38e-32,64;UBERON:0007284,7.38e-32,64;UBERON:0000073,5.05e-31,54;UBERON:0001049,2.64e-29,52;UBERON:0005068,2.64e-29,52;UBERON:0006241,2.64e-29,52;UBERON:0007135,2.64e-29,52;UBERON:0004121,4.36e-29,95;UBERON:0000924,4.36e-29,95;UBERON:0006601,4.36e-29,95;UBERON:0010371,4.95e-26,73;UBERON:0000955,1.26e-25,47;UBERON:0006238,1.26e-25,47;UBERON:0003056,3.09e-25,49;UBERON:0002616,5.28e-25,46;UBERON:0003080,2.55e-23,40;UBERON:0002780,1.63e-22,39;UBERON:0001890,1.63e-22,39;UBERON:0006240,1.63e-22,39;UBERON:0002020,6.10e-21,34;UBERON:0010314,1.95e-19,92;UBERON:0003528,1.21e-17,29;UBERON:0002791,1.21e-17,29;UBERON:0001893,1.21e-17,29;UBERON:0000956,1.15e-12,21;UBERON:0001869,1.15e-12,21;UBERON:0000203,1.15e-12,21;UBERON:0002619,1.33e-10,17;UBERON:0002021,1.72e-07,10;UBERON:0000411,1.72e-07,10;UBERON:0001950,1.72e-07,10 | |||
|phase1_expression=24.9832201483479,0,0,0,0,0,0,3.22808308603941,0.140788722151667,0.234064526321993,0.171217968225505,0,0.171200729931206,0.34968160967599,0.999329285446988,3.03712901084739,0,7.72882305127682,6.99283611389268,10.1853516431527,23.6420346619974,0,0,0.799962113967033,0.45881856213434,0,0,0,0,0.504060259519861,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,8.81277725829041,8.61703915365874,5.50640256485045,0.782391344348039,6.75877984779384,12.0827400503959,11.4713640453827,4.4795654920116,7.18762821824858,3.35565212115473,0,1.00828139742739,0,0.286533439938757,1.54701627683233,52.804596284355,67.1818543675482,50.0726808769882,0.677689064138264,0.889294796111139,0,0,0.7104801149461,11.085204089181,16.5213871288268,32.9732967140959,48.0621140460819,40.5927175408167,117.973856558771,118.606406491016,38.7070925519255,37.5714246391487,45.041720543891,159.668027449114,132.41176959434,152.070467923681,59.216943190857,60.3818447775904,49.4867702028922,165.83470140682,191.902050020803,159.826967174543,95.4596616934683,95.8161411777963,52.7510431685601,0.984440513331393,2.94729084416464,0.289864488701678,0,0,0.539703191637817,0,0,4.49422144421606,0,0,0,19.0138616698519,0,0,0,0,0.253359865475099,0,5.1382745873577,5.95557132388495,8.31275978763019,2.25530924795977,4.56698217468212,2.07553947530453,4.6724018571313,4.35078216402108,2.89033160058254,0,0.433798070759735,0,0.647067399789637,0,0.969750506270444,0,67.3395833126558,56.3411641328194,0.510914110417183,0.838705871541442,0,0,165.219075263519,60.3900795720587,54.9109518733217,114.028754046133,97.9390201575166,115.737940819675,107.890439940059,1.52759045775474,1.36847667671102,4.29628689337247,7.36546495602659,5.20481771850815,5.9774547152703,3.60124259610698,6.48030716693575,8.98081788797528,11.5302348256365,10.1197862524507,16.039608985819,3.44908788692548,4.9167580843633,4.57472922826267,2.41115305670332,2.50242524303038,2.089512999133,1.4404749548556,1.59227413454795,0,0,0,0.621377317606506,1.40715635988658,1.44049649168812,0.710234206755631,0.393528463494808,0.154267112887378,0.232533944750408,1.07309360559848,0.233530684734339,0,0.164167464079095,0.162137619091711,0,0.439100230582101,0.268412837520744,90.4246778825747,48.9825954925394,0.660837565967596,1.32225283331772,2.77274725695804,2.78684006232526,1.15980715189884,1.21010114774006,1.55664630691409,1.14135375667535,0.474529061544512,0.823494773620054,1.75934646160189,1.79060824837036,0.974820435595601,2.69645822596266,0.864552199498777,1.59313018603494,3.03468641524931,3.31320686568214,5.63538678365402,2.03651327845314,5.04276466635827,3.50679099451593,3.47800954183415,1.77132177575523,1.09899109488962,1.35736880313981,0,0.166845105716094,0,0,0,0.241177159752417,0.25462585178142,0,0,0,0,0,0.312037673114561,0.252578877947112,0,0,1.10851914099963,2.08440552947533,1.30371981153621,2.20668611507745,0.704070744865506,0.837531287209079,0.476087281772027,0.780534591431195,1.26108115284953,1.32878813789265,1.43509291791738,0,0.518054945597687,0.289298117163023,0,0,0,0,127.798269630282,123.658329354774,0,0,6.94118082715765,4.68526493155966,6.03185513651837,2.15071918157297,2.89638276307112,2.83076530788832,3.64329631507405,3.79932615284705,6.7198922250909,65.8708698664704,2.12910127812403,2.31485284767432,1.95464351224291,6.43383479592888,2.65490276679926,5.82673526771955,8.46505959501303,3.39489143560617,2.65771703592696,4.91896236710284,3.87642439752332,4.36240475373007,2.85197902707777,3.16036757935816,0,0,75.2371528715871,9.90336017172206,11.6422815404479,11.3598628566744,10.8177542521787,12.664186049747,13.657568709976,14.0053876592716,0.23467170806371,0.21183207086382,3.30792597082443,0.32977250588296,0.161464426695906,0.241251699712623,0.358117032009409,0.164140899745061,1.1659233465194,108.659226978159,2.22132145037209,0.206386867963223,0.185194527369712,0.753473828018764,0.683471138605126,1.83022538565218,3.39956859987711,1.95932033253121,2.21119958087078,0,2.68885594543965,1.21991680276109,1.40406943068342,2.29997125615916,1.31017538247707,2.02296519577231,2.0663363931334,0.26175594198403,1.16653475962614,0,2.81846469342095,0.149516546043979,0.330916980914195,0.388902376688095,0.387479470433193,0.506868376472335,0.821500670520278,1.0416350787516,2.62148361064277,2.41584120826006,3.45636007509439,0.948033361884535,0.810900861160657,2.15693010046137,0.649604114888975,0.537080087002444,0.596044064343795,0.480781798079875,0.443068581523732,0.302899349844443,0.457240839929999,0.403304740547362,0.38983152295901,0.577271049841977,1.16876902181569,0.226730383615211,0.221985953374065,0,0.167884616364078,2.70465431645067,0.375364950902364,2.93042598827624,0.214368379079066,2.00628841614145,85.8422800777941,87.4617949363636,75.049312260561,95.8940757477777,96.5966352876606,98.2012066606611,95.8531950329164,89.1635982383957,106.488466111288,104.069822662116,5.50072942196136,7.98049746802062,7.34154504742777,5.10524105843418,7.75568701723535,9.92754945630076,8.66762238426299,9.06554251851134,7.38114182061175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| |||
|short_description=p1@Zcchc18 | |||
}} |
Revision as of 19:22, 14 September 2013
Short description: | p1@Zcchc18 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zcchc18_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000101227, ENSMUST00000113067, NM_001035509, NM_001035510, NM_025893, uc009ujk.1, uc009ujl.1, uc009ujm.1_5end |
EntrezGene: | Zcchc18 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.25e-15 | 44 |
neurectodermal cell | 6.25e-15 | 44 |
CNS neuron (sensu Vertebrata) | 1.16e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.16e-14 | 23 |
neural cell | 1.79e-14 | 43 |
neuron | 2.36e-14 | 33 |
neuronal stem cell | 2.36e-14 | 33 |
neuroblast | 2.36e-14 | 33 |
electrically signaling cell | 2.36e-14 | 33 |
electrically responsive cell | 6.29e-13 | 39 |
electrically active cell | 6.29e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.23e-36 | 73 |
nervous system | 9.67e-35 | 75 |
neurectoderm | 7.38e-32 | 64 |
neural plate | 7.38e-32 | 64 |
presumptive neural plate | 7.38e-32 | 64 |
regional part of nervous system | 5.05e-31 | 54 |
neural tube | 2.64e-29 | 52 |
neural rod | 2.64e-29 | 52 |
future spinal cord | 2.64e-29 | 52 |
neural keel | 2.64e-29 | 52 |
ectoderm-derived structure | 4.36e-29 | 95 |
ectoderm | 4.36e-29 | 95 |
presumptive ectoderm | 4.36e-29 | 95 |
ecto-epithelium | 4.95e-26 | 73 |
brain | 1.26e-25 | 47 |
future brain | 1.26e-25 | 47 |
pre-chordal neural plate | 3.09e-25 | 49 |
regional part of brain | 5.28e-25 | 46 |
anterior neural tube | 2.55e-23 | 40 |
regional part of forebrain | 1.63e-22 | 39 |
forebrain | 1.63e-22 | 39 |
future forebrain | 1.63e-22 | 39 |
gray matter | 6.10e-21 | 34 |
structure with developmental contribution from neural crest | 1.95e-19 | 92 |
brain grey matter | 1.21e-17 | 29 |
regional part of telencephalon | 1.21e-17 | 29 |
telencephalon | 1.21e-17 | 29 |
cerebral cortex | 1.15e-12 | 21 |
cerebral hemisphere | 1.15e-12 | 21 |
pallium | 1.15e-12 | 21 |
regional part of cerebral cortex | 1.33e-10 | 17 |
occipital lobe | 1.72e-07 | 10 |
visual cortex | 1.72e-07 | 10 |
neocortex | 1.72e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.