FFCP PHASE1:Mm9::chr6:124867957..124867973,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=69202|HGNC=|UniProt=Q9D0J8|association_with_transcript=0bp_to_ENSMUST00000032216,NM_026988,uc009dsm.2_5end|description=CAGE_peak_1_at_Ptms_5end|id=chr6:124867957..124867973,-|ontology_enrichment_celltype=CL:0000221!6.08e-13!44;CL:0000133!6.08e-13!44;CL:0000055!8.78e-13!50;CL:0002319!1.03e-12!43;CL:0002321!1.96e-10!70;CL:0000220!1.96e-10!70;CL:0000540!3.34e-10!33;CL:0000047!3.34e-10!33;CL:0000031!3.34e-10!33;CL:0000404!3.34e-10!33;CL:0000393!1.00e-09!39;CL:0000211!1.00e-09!39;CL:0000117!5.96e-08!23;CL:0000337!5.96e-08!23|ontology_enrichment_celltype_v019_2=CL:0000221,6.08e-13,44;CL:0000133,6.08e-13,44;CL:0002319,1.03e-12,43;CL:0002321,1.96e-10,70;CL:0000540,3.34e-10,33;CL:0000047,3.34e-10,33;CL:0000031,3.34e-10,33;CL:0000404,3.34e-10,33;CL:0000393,1.00e-09,39;CL:0000211,1.00e-09,39;CL:0000117,5.96e-08,23;CL:0000337,5.96e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.39e-14!73;UBERON:0005743!1.39e-14!73;UBERON:0000073!2.33e-13!75;UBERON:0001016!2.33e-13!75;UBERON:0004121!7.61e-13!102;UBERON:0000924!7.61e-13!102;UBERON:0006601!7.61e-13!102;UBERON:0002020!6.71e-12!34;UBERON:0002346!1.72e-11!71;UBERON:0003075!1.72e-11!71;UBERON:0007284!1.72e-11!71;UBERON:0000025!6.38e-11!114;UBERON:0004111!5.63e-10!122;UBERON:0002791!1.28e-09!29;UBERON:0003528!1.28e-09!29;UBERON:0001893!1.28e-09!29;UBERON:0003056!1.41e-09!49;UBERON:0001049!1.91e-09!52;UBERON:0005068!1.91e-09!52;UBERON:0006241!1.91e-09!52;UBERON:0007135!1.91e-09!52;UBERON:0002780!5.68e-09!39;UBERON:0001890!5.68e-09!39;UBERON:0006240!5.68e-09!39;UBERON:0003080!2.00e-08!40;UBERON:0000956!3.63e-08!21;UBERON:0001869!3.63e-08!21;UBERON:0000203!3.63e-08!21;UBERON:0000033!7.10e-08!63;UBERON:0002616!2.98e-07!49;UBERON:0000955!5.18e-07!50;UBERON:0006238!5.18e-07!50;UBERON:0002619!9.21e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.39e-14,73;UBERON:0001016,2.33e-13,75;UBERON:0004121,1.35e-12,95;UBERON:0000924,1.35e-12,95;UBERON:0006601,1.35e-12,95;UBERON:0002020,6.71e-12,34;UBERON:0002346,1.83e-11,64;UBERON:0003075,1.83e-11,64;UBERON:0007284,1.83e-11,64;UBERON:0000025,6.38e-11,114;UBERON:0010314,1.95e-10,92;UBERON:0010371,2.66e-10,73;UBERON:0004111,5.63e-10,122;UBERON:0003528,1.28e-09,29;UBERON:0002791,1.28e-09,29;UBERON:0001893,1.28e-09,29;UBERON:0003056,1.41e-09,49;UBERON:0001049,1.91e-09,52;UBERON:0005068,1.91e-09,52;UBERON:0006241,1.91e-09,52;UBERON:0007135,1.91e-09,52;UBERON:0000073,3.52e-09,54;UBERON:0002780,5.68e-09,39;UBERON:0001890,5.68e-09,39;UBERON:0006240,5.68e-09,39;UBERON:0003080,2.00e-08,40;UBERON:0000956,3.63e-08,21;UBERON:0001869,3.63e-08,21;UBERON:0000203,3.63e-08,21;UBERON:0002616,8.33e-08,46;UBERON:0000955,1.54e-07,47;UBERON:0006238,1.54e-07,47;UBERON:0002619,9.21e-07,17|phase1_expression=544.826377850509,167.857171074533,233.414609806832,305.186389208591,329.08849457475,246.782529710478,231.510126830166,127.573843560277,64.19965730116,111.180650002947,9.24577028417727,8.53562101250099,25.5089087597497,37.5033526377499,34.3103054670133,20.2475267389826,16.7894850750755,28.8647881302787,22.6238815449469,30.9804445812562,408.292836015286,20.9503907033868,19.5899841854202,209.430081436569,224.362276883692,188.922316193842,191.689088290788,205.775027215024,381.377002848942,227.079146913698,146.120406521846,50.1674232033109,46.1298590688428,110.937176710807,380.70643483218,348.4278166714,387.105099473452,50.2237956884289,55.4748094611898,56.5405643491702,107.058130821645,90.1620040145148,100.015132724418,287.296538620267,292.4724465683,377.188575692256,2042.82380009273,1245.14166808873,1534.28830021755,1056.33764167058,944.348400284696,1763.8439647582,17.1138258178891,39.8949178106239,12.7715643674136,786.44209596189,841.548713100128,718.846896634755,1848.36318641329,2115.43492610886,1976.28631613227,1234.74947485992,1813.27208927061,1261.65940362852,1465.49994932426,1587.21257678959,1073.76679609796,1287.89975943785,1202.38474432911,1371.52532751165,1408.1256162475,1051.7669245748,996.117119691777,1396.76258344812,1181.77465765485,1733.6466315465,355.674295628026,413.579288057923,415.505672458139,1688.6720280974,1486.21677032114,1549.1963640358,447.530347399214,368.046746960719,446.782076499393,1077.4567370772,928.120987129352,1341.51681160469,111.014599426448,229.813114284735,323.778633879774,1265.68352303962,1575.49358020086,2367.13819852347,1960.37545143962,2106.17439624457,666.97055120569,1247.89082191654,1121.23639586598,1388.97786740015,614.218153646104,713.495214423607,1182.29631223884,2474.51212697359,271.912747510085,274.388734309532,312.414107019136,752.129215709448,87.2620667890969,542.704460420999,441.173185966283,451.522304336905,492.133471144429,494.219538372049,317.607097973539,819.723175243473,394.028778568592,828.843513864934,97.3071607144862,450.19714340364,258.605418117121,213.345111379498,465.979403045305,306.248713674078,393.340915395669,298.118383428426,31.511377745057,21.5964983157627,26.9388881394897,251.648274200102,582.85576799093,1858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| ||
|EntrezGene=69202 | |||
|HGNC= | |||
|UniProt=Q9D0J8 | |||
|association_with_transcript=0bp_to_ENSMUST00000032216,NM_026988,uc009dsm.2_5end | |||
|description=CAGE_peak_1_at_Ptms_5end | |||
|id=chr6:124867957..124867973,- | |||
|ontology_enrichment_celltype=CL:0000221!6.08e-13!44;CL:0000133!6.08e-13!44;CL:0000055!8.78e-13!50;CL:0002319!1.03e-12!43;CL:0002321!1.96e-10!70;CL:0000220!1.96e-10!70;CL:0000540!3.34e-10!33;CL:0000047!3.34e-10!33;CL:0000031!3.34e-10!33;CL:0000404!3.34e-10!33;CL:0000393!1.00e-09!39;CL:0000211!1.00e-09!39;CL:0000117!5.96e-08!23;CL:0000337!5.96e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,6.08e-13,44;CL:0000133,6.08e-13,44;CL:0002319,1.03e-12,43;CL:0002321,1.96e-10,70;CL:0000540,3.34e-10,33;CL:0000047,3.34e-10,33;CL:0000031,3.34e-10,33;CL:0000404,3.34e-10,33;CL:0000393,1.00e-09,39;CL:0000211,1.00e-09,39;CL:0000117,5.96e-08,23;CL:0000337,5.96e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.39e-14!73;UBERON:0005743!1.39e-14!73;UBERON:0000073!2.33e-13!75;UBERON:0001016!2.33e-13!75;UBERON:0004121!7.61e-13!102;UBERON:0000924!7.61e-13!102;UBERON:0006601!7.61e-13!102;UBERON:0002020!6.71e-12!34;UBERON:0002346!1.72e-11!71;UBERON:0003075!1.72e-11!71;UBERON:0007284!1.72e-11!71;UBERON:0000025!6.38e-11!114;UBERON:0004111!5.63e-10!122;UBERON:0002791!1.28e-09!29;UBERON:0003528!1.28e-09!29;UBERON:0001893!1.28e-09!29;UBERON:0003056!1.41e-09!49;UBERON:0001049!1.91e-09!52;UBERON:0005068!1.91e-09!52;UBERON:0006241!1.91e-09!52;UBERON:0007135!1.91e-09!52;UBERON:0002780!5.68e-09!39;UBERON:0001890!5.68e-09!39;UBERON:0006240!5.68e-09!39;UBERON:0003080!2.00e-08!40;UBERON:0000956!3.63e-08!21;UBERON:0001869!3.63e-08!21;UBERON:0000203!3.63e-08!21;UBERON:0000033!7.10e-08!63;UBERON:0002616!2.98e-07!49;UBERON:0000955!5.18e-07!50;UBERON:0006238!5.18e-07!50;UBERON:0002619!9.21e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.39e-14,73;UBERON:0001016,2.33e-13,75;UBERON:0004121,1.35e-12,95;UBERON:0000924,1.35e-12,95;UBERON:0006601,1.35e-12,95;UBERON:0002020,6.71e-12,34;UBERON:0002346,1.83e-11,64;UBERON:0003075,1.83e-11,64;UBERON:0007284,1.83e-11,64;UBERON:0000025,6.38e-11,114;UBERON:0010314,1.95e-10,92;UBERON:0010371,2.66e-10,73;UBERON:0004111,5.63e-10,122;UBERON:0003528,1.28e-09,29;UBERON:0002791,1.28e-09,29;UBERON:0001893,1.28e-09,29;UBERON:0003056,1.41e-09,49;UBERON:0001049,1.91e-09,52;UBERON:0005068,1.91e-09,52;UBERON:0006241,1.91e-09,52;UBERON:0007135,1.91e-09,52;UBERON:0000073,3.52e-09,54;UBERON:0002780,5.68e-09,39;UBERON:0001890,5.68e-09,39;UBERON:0006240,5.68e-09,39;UBERON:0003080,2.00e-08,40;UBERON:0000956,3.63e-08,21;UBERON:0001869,3.63e-08,21;UBERON:0000203,3.63e-08,21;UBERON:0002616,8.33e-08,46;UBERON:0000955,1.54e-07,47;UBERON:0006238,1.54e-07,47;UBERON:0002619,9.21e-07,17 | |||
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| |||
|short_description=p1@Ptms | |||
}} |
Revision as of 08:52, 14 September 2013
Short description: | p1@Ptms |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ptms_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000032216, NM_026988, uc009dsm.2_5end |
EntrezGene: | Ptms |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 6.08e-13 | 44 |
neurectodermal cell | 6.08e-13 | 44 |
neural cell | 1.03e-12 | 43 |
embryonic cell | 1.96e-10 | 70 |
neuron | 3.34e-10 | 33 |
neuronal stem cell | 3.34e-10 | 33 |
neuroblast | 3.34e-10 | 33 |
electrically signaling cell | 3.34e-10 | 33 |
electrically responsive cell | 1.00e-09 | 39 |
electrically active cell | 1.00e-09 | 39 |
CNS neuron (sensu Vertebrata) | 5.96e-08 | 23 |
neuroblast (sensu Vertebrata) | 5.96e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.39e-14 | 73 |
nervous system | 2.33e-13 | 75 |
ectoderm-derived structure | 1.35e-12 | 95 |
ectoderm | 1.35e-12 | 95 |
presumptive ectoderm | 1.35e-12 | 95 |
gray matter | 6.71e-12 | 34 |
neurectoderm | 1.83e-11 | 64 |
neural plate | 1.83e-11 | 64 |
presumptive neural plate | 1.83e-11 | 64 |
tube | 6.38e-11 | 114 |
structure with developmental contribution from neural crest | 1.95e-10 | 92 |
ecto-epithelium | 2.66e-10 | 73 |
anatomical conduit | 5.63e-10 | 122 |
brain grey matter | 1.28e-09 | 29 |
regional part of telencephalon | 1.28e-09 | 29 |
telencephalon | 1.28e-09 | 29 |
pre-chordal neural plate | 1.41e-09 | 49 |
neural tube | 1.91e-09 | 52 |
neural rod | 1.91e-09 | 52 |
future spinal cord | 1.91e-09 | 52 |
neural keel | 1.91e-09 | 52 |
regional part of nervous system | 3.52e-09 | 54 |
regional part of forebrain | 5.68e-09 | 39 |
forebrain | 5.68e-09 | 39 |
future forebrain | 5.68e-09 | 39 |
anterior neural tube | 2.00e-08 | 40 |
cerebral cortex | 3.63e-08 | 21 |
cerebral hemisphere | 3.63e-08 | 21 |
pallium | 3.63e-08 | 21 |
regional part of brain | 8.33e-08 | 46 |
brain | 1.54e-07 | 47 |
future brain | 1.54e-07 | 47 |
regional part of cerebral cortex | 9.21e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.