FFCP PHASE1:Mm9::chr2:157249991..157250058,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20779|HGNC=|MCL_coexpression_id=24|UniProt=Q80XU2,P05480|association_with_transcript=0bp_to_ENSMUST00000029175,ENSMUST00000092576,NM_001025395,NM_009271,uc008npa.1,uc008npb.1,uc012cia.1_5end|description=CAGE_peak_1_at_Src_5end|id=chr2:157249991..157250058,+|ontology_enrichment_celltype=CL:0002321!1.65e-11!70;CL:0000220!1.65e-11!70;CL:0000221!4.54e-11!44;CL:0000133!4.54e-11!44;CL:0002319!4.56e-11!43;CL:0000540!6.91e-11!33;CL:0000047!6.91e-11!33;CL:0000031!6.91e-11!33;CL:0000404!6.91e-11!33;CL:0000055!9.23e-09!50;CL:0000393!9.68e-09!39;CL:0000211!9.68e-09!39;CL:0000117!6.21e-08!23;CL:0000337!6.21e-08!23|ontology_enrichment_celltype_v019_2=CL:0002321,1.72e-11,70;CL:0000221,4.50e-11,44;CL:0000133,4.50e-11,44;CL:0002319,4.52e-11,43;CL:0000540,6.86e-11,33;CL:0000047,6.86e-11,33;CL:0000031,6.86e-11,33;CL:0000404,6.86e-11,33;CL:0000393,9.63e-09,39;CL:0000211,9.63e-09,39;CL:0000117,6.17e-08,23;CL:0000337,6.17e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.82e-16!73;UBERON:0005743!3.82e-16!73;UBERON:0000073!1.47e-15!75;UBERON:0001016!1.47e-15!75;UBERON:0004121!1.34e-13!102;UBERON:0000924!1.34e-13!102;UBERON:0006601!1.34e-13!102;UBERON:0000160!4.32e-12!43;UBERON:0000955!2.53e-10!50;UBERON:0006238!2.53e-10!50;UBERON:0002616!3.20e-10!49;UBERON:0001049!3.74e-10!52;UBERON:0005068!3.74e-10!52;UBERON:0006241!3.74e-10!52;UBERON:0007135!3.74e-10!52;UBERON:0000033!4.59e-10!63;UBERON:0005409!1.48e-09!59;UBERON:0003080!1.71e-09!40;UBERON:0002780!2.20e-09!39;UBERON:0001890!2.20e-09!39;UBERON:0006240!2.20e-09!39;UBERON:0003056!3.38e-09!49;UBERON:0002020!3.51e-09!34;UBERON:0000344!6.90e-09!15;UBERON:0002346!1.53e-08!71;UBERON:0003075!1.53e-08!71;UBERON:0007284!1.53e-08!71;UBERON:0002791!3.56e-08!29;UBERON:0003528!3.56e-08!29;UBERON:0001893!3.56e-08!29;UBERON:0001242!1.04e-07!13;UBERON:0000060!1.04e-07!13;UBERON:0001262!1.04e-07!13;UBERON:0004786!1.04e-07!13;UBERON:0002050!5.12e-07!317;UBERON:0005423!5.12e-07!317|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.61e-16,95;UBERON:0000924,2.61e-16,95;UBERON:0006601,2.61e-16,95;UBERON:0001017,3.77e-16,73;UBERON:0001016,1.45e-15,75;UBERON:0000160,1.18e-13,31;UBERON:0011216,1.12e-11,194;UBERON:0000073,2.54e-11,54;UBERON:0010371,2.94e-11,73;UBERON:0002346,4.27e-11,64;UBERON:0003075,4.27e-11,64;UBERON:0007284,4.27e-11,64;UBERON:0001049,3.71e-10,52;UBERON:0005068,3.71e-10,52;UBERON:0006241,3.71e-10,52;UBERON:0007135,3.71e-10,52;UBERON:0005409,7.20e-10,47;UBERON:0000955,1.58e-09,47;UBERON:0006238,1.58e-09,47;UBERON:0003080,1.70e-09,40;UBERON:0002616,1.99e-09,46;UBERON:0002780,2.19e-09,39;UBERON:0001890,2.19e-09,39;UBERON:0006240,2.19e-09,39;UBERON:0003056,3.35e-09,49;UBERON:0002020,3.49e-09,34;UBERON:0000344,6.86e-09,15;UBERON:0003528,3.54e-08,29;UBERON:0002791,3.54e-08,29;UBERON:0001893,3.54e-08,29;UBERON:0001242,1.03e-07,13;UBERON:0001262,1.03e-07,13;UBERON:0004786,1.03e-07,13|phase1_expression=16.1750335575842,326.292006142803,358.994399878344,193.577095236371,268.480111251242,112.81487072479,88.0719655045132,5.16493293766305,0.422366166455,0.468129052643987,0,0.239316476986009,0,0,0.333109761815663,0.404950534779652,0.699561878128147,0.315462165358238,0.548457734422955,0,17.093701320365,0.794327609607082,0,65.1169160769165,66.2992822284121,256.681687959414,178.766228406016,157.724942326071,90.0711008223212,69.308285683981,74.2797210695271,4.44521471421742,1.23012957516914,0,24.2635360591071,19.7819227976606,23.4794759701724,0,0,0,0,0.683045484958446,0.485510353031154,9.9458486200706,13.990016508293,9.72797786456912,25.0365230191373,18.532138292338,28.3395175727469,21.5817187972455,14.4186014274123,18.6878333674463,0.167782606057736,1.45072428402269,0.336093799142464,14.406528418013,13.7536051170603,18.5641953219879,41.4748744762175,32.268449735594,32.9592329823213,24.7356508410466,16.0073063300005,30.5965903875676,33.6214563272771,39.7868864369816,38.3488141463558,49.9483796918021,33.0769863264044,39.691745869517,42.6959671543305,25.4229376119385,28.2711732418065,34.4199145794021,37.5714246391487,39.5264078242309,25.3266526298594,36.6462660304489,28.417208652405,49.4573578988227,47.4820870296506,36.98484930953,21.217907924105,23.6360296213306,25.9757021220577,23.2756582524197,25.1997875014412,34.6702969235059,7.87552410665114,18.1371744256285,15.6526823898906,7.74381489283248,13.599426674155,2.15881276655127,0,0.896053774194671,13.9039975930434,12.1005529030421,15.5871602761721,12.7202246823722,19.858922188512,14.115912515575,22.9324715735981,14.2213340630666,50.0094304735905,51.432052691445,65.7181778519218,16.0999270403875,5.43769555659061,7.12522267511159,13.5318554877586,11.5696881758614,8.76338889573022,9.94769427647309,12.1116368349776,7.28866229712118,44.7422891599217,5.63937491987655,14.153768831198,8.8971767471075,8.83366073841574,9.69750506270444,50.325775528893,16.6885054296582,23.0391377494801,64.8860920229822,2.27648736561249,1.19980546198682,1.90605340609597,23.2175491077475,17.842523509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| ||
|EntrezGene=20779 | |||
|HGNC= | |||
|MCL_coexpression_id=24 | |||
|UniProt=Q80XU2,P05480 | |||
|association_with_transcript=0bp_to_ENSMUST00000029175,ENSMUST00000092576,NM_001025395,NM_009271,uc008npa.1,uc008npb.1,uc012cia.1_5end | |||
|description=CAGE_peak_1_at_Src_5end | |||
|id=chr2:157249991..157250058,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.65e-11!70;CL:0000220!1.65e-11!70;CL:0000221!4.54e-11!44;CL:0000133!4.54e-11!44;CL:0002319!4.56e-11!43;CL:0000540!6.91e-11!33;CL:0000047!6.91e-11!33;CL:0000031!6.91e-11!33;CL:0000404!6.91e-11!33;CL:0000055!9.23e-09!50;CL:0000393!9.68e-09!39;CL:0000211!9.68e-09!39;CL:0000117!6.21e-08!23;CL:0000337!6.21e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.72e-11,70;CL:0000221,4.50e-11,44;CL:0000133,4.50e-11,44;CL:0002319,4.52e-11,43;CL:0000540,6.86e-11,33;CL:0000047,6.86e-11,33;CL:0000031,6.86e-11,33;CL:0000404,6.86e-11,33;CL:0000393,9.63e-09,39;CL:0000211,9.63e-09,39;CL:0000117,6.17e-08,23;CL:0000337,6.17e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.82e-16!73;UBERON:0005743!3.82e-16!73;UBERON:0000073!1.47e-15!75;UBERON:0001016!1.47e-15!75;UBERON:0004121!1.34e-13!102;UBERON:0000924!1.34e-13!102;UBERON:0006601!1.34e-13!102;UBERON:0000160!4.32e-12!43;UBERON:0000955!2.53e-10!50;UBERON:0006238!2.53e-10!50;UBERON:0002616!3.20e-10!49;UBERON:0001049!3.74e-10!52;UBERON:0005068!3.74e-10!52;UBERON:0006241!3.74e-10!52;UBERON:0007135!3.74e-10!52;UBERON:0000033!4.59e-10!63;UBERON:0005409!1.48e-09!59;UBERON:0003080!1.71e-09!40;UBERON:0002780!2.20e-09!39;UBERON:0001890!2.20e-09!39;UBERON:0006240!2.20e-09!39;UBERON:0003056!3.38e-09!49;UBERON:0002020!3.51e-09!34;UBERON:0000344!6.90e-09!15;UBERON:0002346!1.53e-08!71;UBERON:0003075!1.53e-08!71;UBERON:0007284!1.53e-08!71;UBERON:0002791!3.56e-08!29;UBERON:0003528!3.56e-08!29;UBERON:0001893!3.56e-08!29;UBERON:0001242!1.04e-07!13;UBERON:0000060!1.04e-07!13;UBERON:0001262!1.04e-07!13;UBERON:0004786!1.04e-07!13;UBERON:0002050!5.12e-07!317;UBERON:0005423!5.12e-07!317 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.61e-16,95;UBERON:0000924,2.61e-16,95;UBERON:0006601,2.61e-16,95;UBERON:0001017,3.77e-16,73;UBERON:0001016,1.45e-15,75;UBERON:0000160,1.18e-13,31;UBERON:0011216,1.12e-11,194;UBERON:0000073,2.54e-11,54;UBERON:0010371,2.94e-11,73;UBERON:0002346,4.27e-11,64;UBERON:0003075,4.27e-11,64;UBERON:0007284,4.27e-11,64;UBERON:0001049,3.71e-10,52;UBERON:0005068,3.71e-10,52;UBERON:0006241,3.71e-10,52;UBERON:0007135,3.71e-10,52;UBERON:0005409,7.20e-10,47;UBERON:0000955,1.58e-09,47;UBERON:0006238,1.58e-09,47;UBERON:0003080,1.70e-09,40;UBERON:0002616,1.99e-09,46;UBERON:0002780,2.19e-09,39;UBERON:0001890,2.19e-09,39;UBERON:0006240,2.19e-09,39;UBERON:0003056,3.35e-09,49;UBERON:0002020,3.49e-09,34;UBERON:0000344,6.86e-09,15;UBERON:0003528,3.54e-08,29;UBERON:0002791,3.54e-08,29;UBERON:0001893,3.54e-08,29;UBERON:0001242,1.03e-07,13;UBERON:0001262,1.03e-07,13;UBERON:0004786,1.03e-07,13 | |||
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| |||
|short_description=p1@Src | |||
}} |
Revision as of 22:38, 13 September 2013
Short description: | p1@Src |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Src_5end |
Coexpression cluster: | MCL_coexpression_mm9:24 |
Association with transcript: | 0bp_to_ENSMUST00000029175, ENSMUST00000092576, NM_001025395, NM_009271, uc008npa.1, uc008npb.1, uc012cia.1_5end |
EntrezGene: | Src |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.72e-11 | 70 |
ectodermal cell | 4.50e-11 | 44 |
neurectodermal cell | 4.50e-11 | 44 |
neural cell | 4.52e-11 | 43 |
neuron | 6.86e-11 | 33 |
neuronal stem cell | 6.86e-11 | 33 |
neuroblast | 6.86e-11 | 33 |
electrically signaling cell | 6.86e-11 | 33 |
electrically responsive cell | 9.63e-09 | 39 |
electrically active cell | 9.63e-09 | 39 |
CNS neuron (sensu Vertebrata) | 6.17e-08 | 23 |
neuroblast (sensu Vertebrata) | 6.17e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.61e-16 | 95 |
ectoderm | 2.61e-16 | 95 |
presumptive ectoderm | 2.61e-16 | 95 |
central nervous system | 3.77e-16 | 73 |
nervous system | 1.45e-15 | 75 |
intestine | 1.18e-13 | 31 |
organ system subdivision | 1.12e-11 | 194 |
regional part of nervous system | 2.54e-11 | 54 |
ecto-epithelium | 2.94e-11 | 73 |
neurectoderm | 4.27e-11 | 64 |
neural plate | 4.27e-11 | 64 |
presumptive neural plate | 4.27e-11 | 64 |
neural tube | 3.71e-10 | 52 |
neural rod | 3.71e-10 | 52 |
future spinal cord | 3.71e-10 | 52 |
neural keel | 3.71e-10 | 52 |
gastrointestinal system | 7.20e-10 | 47 |
brain | 1.58e-09 | 47 |
future brain | 1.58e-09 | 47 |
anterior neural tube | 1.70e-09 | 40 |
regional part of brain | 1.99e-09 | 46 |
regional part of forebrain | 2.19e-09 | 39 |
forebrain | 2.19e-09 | 39 |
future forebrain | 2.19e-09 | 39 |
pre-chordal neural plate | 3.35e-09 | 49 |
gray matter | 3.49e-09 | 34 |
mucosa | 6.86e-09 | 15 |
brain grey matter | 3.54e-08 | 29 |
regional part of telencephalon | 3.54e-08 | 29 |
telencephalon | 3.54e-08 | 29 |
intestinal mucosa | 1.03e-07 | 13 |
wall of intestine | 1.03e-07 | 13 |
gastrointestinal system mucosa | 1.03e-07 | 13 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.