FFCP PHASE1:Hg19::chr12:125398498..125398506,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7316|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=12468|TSSclassifier=S|UniProt=|association_with_transcript=-178bp_to_uc001ugu.1_5end|coexpression_cluster_id=C356|description=CAGE_peak_16_at_UBC_5end|id=chr12:125398498..125398506,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000453;3.73e-23;5!CL:0000990;3.73e-13;8!CL:0000451;7.21e-11;10!CL:0001014;1.59e-07;2!CL:0002097;1.59e-07;2!CL:0001016;1.59e-07;2|ontology_enrichment_celltype_v019_2=CL:0000453,5.88e-23,5;CL:0000990,4.79e-13,8;CL:0000451,8.83e-11,10;CL:0002097,1.99e-07,2;CL:0001014,2.12e-07,2;CL:0001016,2.12e-07,2|ontology_enrichment_development_v019=UBERON:0005425;9.12e-14;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:6193;9.12e-14;1!DOID:3350;1.59e-07;2|ontology_enrichment_disease_v019_2=DOID:6193,8.58e-14,1;DOID:3350,1.54e-07,2|ontology_enrichment_uberon=UBERON:0007023!8.66e-10!115;UBERON:0001004!6.33e-07!72|ontology_enrichment_uberon_v019=UBERON:0000941;9.12e-14;1!UBERON:0001785;9.12e-14;1!UBERON:0002464;9.12e-14;1!UBERON:0004904;9.12e-14;1!UBERON:0001021;9.12e-14;1!UBERON:0002370;1.59e-07;2!UBERON:0003127;1.59e-07;2!UBERON:0003714;1.59e-07;2!UBERON:0005162;1.59e-07;2!UBERON:0000122;1.59e-07;2!UBERON:0005058;1.59e-07;2!UBERON:0009113;1.59e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000941,6.65e-14,1;UBERON:0001785,6.65e-14,1;UBERON:0002464,6.65e-14,1;UBERON:0004904,6.65e-14,1;UBERON:0001021,6.65e-14,1;UBERON:0003902,6.65e-14,1;UBERON:0005425,6.65e-14,1;UBERON:0003714,1.36e-07,2;UBERON:0005162,1.36e-07,2;UBERON:0000122,1.36e-07,2;UBERON:0003127,1.64e-07,2|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0.672325146451775,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0,0.369754010166788,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0.242584061187816,0.232429036905685,0,0.309706370895104,0,0,0.236482229888585,0.344745680736619,0,0,0,0,0.224723484445085,1.53041946185451,0.962787081228281,0,0,0,0.426224750532694,0.290209238628584,0,0,0.251248665256743,1.0429658368404,0,0,0,0.632924774881769,0,0.212604299965044,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0.411202997999018,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0.386521706326594,0.818238361772504,0.573609190778008,0.121973706129595,0.132529768321485,0.116193942869518,0.207322110030741,0.252320850875628,0,0,0,0,0.464367928031979,0,0.236613600079688,0.168584690078102,0,0.55146986366197,0.217879444092406,0.474541238222193,0.404493924480493,0.392442930250692,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0.109750285408626,1.1240175325762,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0.335964256397719,0.567100388969546,0.268675568108545,0,0.766765358330422,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0.868687840005475,0,0,0.112085143993527,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40354529212299,0.0920809889358963,0,0,0,0,0.308061348417659,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,1.44257416306811,0.0915694648183434,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,1.31801321087491,0.86101074534246,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0.111443384277478,0,0.23874448473769,0,0,0,0.140669416410513,0.222617410045812,0,0,0,0,0,0.102268682502155,0.492339221844278,0,0.0898683511473268,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0.724999575434793,0,0,0,0,0,0,0,0.241192877250816,0,0.221158519862449,0.295547618953547,0.219385397153973,0,0.697118721393016,0.307801034015188,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0.802577647298789,0.234264445725339,0,0,0.242780379534093,0,0,0,0.126373159256976,0.150323419414493,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0.17472666824203,1.37588825977293,0,0.0730893170861856,0,0.775912131907355,0.264768380074501,0,0,0,0,0,0.240476460754601,0,0.19980960958213,0,0,0.171594997861965,0,0.372757606696298,0,0,0,0.611989305817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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7316 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12468 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-178bp_to_uc001ugu.1_5end | |||
|coexpression_cluster_id=C356 | |||
|description=CAGE_peak_16_at_UBC_5end | |||
|id=chr12:125398498..125398506,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000453;3.73e-23;5!CL:0000990;3.73e-13;8!CL:0000451;7.21e-11;10!CL:0001014;1.59e-07;2!CL:0002097;1.59e-07;2!CL:0001016;1.59e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,5.88e-23,5;CL:0000990,4.79e-13,8;CL:0000451,8.83e-11,10;CL:0002097,1.99e-07,2;CL:0001014,2.12e-07,2;CL:0001016,2.12e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0005425;9.12e-14;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;9.12e-14;1!DOID:3350;1.59e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,8.58e-14,1;DOID:3350,1.54e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.66e-10!115;UBERON:0001004!6.33e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;9.12e-14;1!UBERON:0001785;9.12e-14;1!UBERON:0002464;9.12e-14;1!UBERON:0004904;9.12e-14;1!UBERON:0001021;9.12e-14;1!UBERON:0002370;1.59e-07;2!UBERON:0003127;1.59e-07;2!UBERON:0003714;1.59e-07;2!UBERON:0005162;1.59e-07;2!UBERON:0000122;1.59e-07;2!UBERON:0005058;1.59e-07;2!UBERON:0009113;1.59e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,6.65e-14,1;UBERON:0001785,6.65e-14,1;UBERON:0002464,6.65e-14,1;UBERON:0004904,6.65e-14,1;UBERON:0001021,6.65e-14,1;UBERON:0003902,6.65e-14,1;UBERON:0005425,6.65e-14,1;UBERON:0003714,1.36e-07,2;UBERON:0005162,1.36e-07,2;UBERON:0000122,1.36e-07,2;UBERON:0003127,1.64e-07,2 | |||
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| |||
|short_description=p16@UBC | |||
}} |
Revision as of 21:36, 10 September 2013
Short description: | p16@UBC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_16_at_UBC_5end |
Coexpression cluster: | C356_renal_Smooth_Chondrocyte_thyroid_serous_Small_mesenchymal |
Association with transcript: | -178bp_to_uc001ugu.1_5end |
EntrezGene: | UBC |
HGNC: | 12468 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 5.88e-23 | 5 |
conventional dendritic cell | 4.79e-13 | 8 |
dendritic cell | 8.83e-11 | 10 |
cortical cell of adrenal gland | 1.99e-07 | 2 |
CD1a-positive Langerhans cell | 2.12e-07 | 2 |
immature CD1a-positive Langerhans cell | 2.12e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 6.65e-14 | 1 |
cranial nerve | 6.65e-14 | 1 |
nerve trunk | 6.65e-14 | 1 |
nerve connecting eye with brain | 6.65e-14 | 1 |
nerve | 6.65e-14 | 1 |
retinal neural layer | 6.65e-14 | 1 |
presumptive neural retina | 6.65e-14 | 1 |
neural tissue | 1.36e-07 | 2 |
multi cell component structure | 1.36e-07 | 2 |
neuron projection bundle | 1.36e-07 | 2 |
open tracheal system trachea | 1.64e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 8.58e-14 | 1 |
mesenchymal cell neoplasm | 1.54e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.