FFCP PHASE1:Hg19::chr16:20912382..20912415,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57149|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25074|TSSclassifier=S|UniProt=O43325|association_with_transcript=-10bp_to_ENST00000396052,uc002dib.2_5end|coexpression_cluster_id=C0|description=CAGE_peak_8_at_LYRM1_5end|id=chr16:20912382..20912415,+|ontology_enrichment_celltype=CL:0002057!3.20e-21!42;CL:0000860!7.94e-20!45;CL:0000766!3.35e-17!76;CL:0000557!8.80e-17!71;CL:0000037!1.14e-16!172;CL:0000566!1.14e-16!172;CL:0000763!1.24e-16!112;CL:0000049!1.24e-16!112;CL:0002032!3.67e-16!165;CL:0000837!3.67e-16!165;CL:0000738!3.67e-16!140;CL:0000988!1.50e-15!182;CL:0000839!4.97e-14!70;CL:0002031!7.04e-14!124;CL:0002009!1.78e-13!65;CL:0002194!1.81e-12!63;CL:0000576!1.81e-12!63;CL:0000040!1.81e-12!63;CL:0000559!1.81e-12!63;CL:0002087!2.04e-12!119;CL:0002393!6.26e-07!9;CL:0002397!6.26e-07!9|ontology_enrichment_celltype_v019=CL:0000860;1.09e-28;33!CL:0002057;1.09e-28;33!CL:0000576;4.06e-22;48!CL:0000473;2.14e-19;39!CL:0000234;2.14e-19;39!CL:0000766;9.22e-18;69!CL:0002393;2.34e-13;6!CL:0002397;2.34e-13;6!CL:0002087;8.85e-11;104!CL:0000763;5.28e-10;100!CL:0000840;1.57e-08;5!CL:0000738;6.87e-08;136!CL:0000097;7.05e-08;5!CL:0000623;1.06e-07;3!CL:0000767;2.25e-07;3!CL:0000988;2.71e-07;177!CL:0000094;3.46e-07;8!CL:0000226;5.75e-07;3!CL:0000842;5.75e-07;3!CL:0000081;6.00e-07;11|ontology_enrichment_celltype_v019_2=CL:0000766,1.37e-44,72;CL:0000557,2.18e-43,67;CL:0000860,1.13e-41,42;CL:0002057,1.13e-41,42;CL:0000738,3.31e-37,136;CL:0000839,4.69e-37,66;CL:0000763,4.89e-37,108;CL:0000049,4.89e-37,108;CL:0002009,1.38e-35,61;CL:0000988,2.12e-35,177;CL:0000473,2.82e-35,48;CL:0000234,2.82e-35,48;CL:0000037,7.94e-34,168;CL:0002194,1.46e-32,59;CL:0000576,1.46e-32,59;CL:0000040,1.46e-32,59;CL:0000559,1.46e-32,59;CL:0002032,9.97e-32,161;CL:0000837,9.97e-32,161;CL:0002031,3.37e-30,120;CL:0002087,6.79e-27,115;CL:0000134,1.61e-12,354;CL:0002320,6.03e-12,361;CL:0002393,1.88e-11,9;CL:0002397,1.88e-11,9;CL:0000219,5.98e-10,386;CL:0000034,2.70e-09,441;CL:0000048,4.90e-09,427;CL:0000840,8.52e-09,5;CL:0001029,8.52e-09,5;CL:0000723,1.12e-08,433;CL:0000097,4.54e-08,5;CL:0002028,4.54e-08,5;CL:0000623,1.03e-07,3;CL:0000825,1.03e-07,3;CL:0000767,2.77e-07,3;CL:0000094,3.99e-07,8;CL:0000081,5.34e-07,11;CL:0000226,7.40e-07,3;CL:0000842,7.40e-07,3|ontology_enrichment_development_v019=CL:0002057;8.61e-28;42!CL:0000049;1.05e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!5.53e-16!102;UBERON:0003061!5.53e-16!102;UBERON:0002371!6.80e-15!80;UBERON:0002193!2.13e-14!112;UBERON:0001474!7.55e-13!86;UBERON:0002405!6.87e-10!115;UBERON:0004765!3.01e-09!101;UBERON:0001434!3.01e-09!101|ontology_enrichment_uberon_v019=UBERON:0000178;1.79e-09;15!UBERON:0000179;1.79e-09;15!UBERON:0000463;1.79e-09;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.10e-41,98;UBERON:0003061,2.10e-41,98;UBERON:0002371,7.12e-37,76;UBERON:0002193,2.79e-36,108;UBERON:0001474,2.52e-33,82;UBERON:0004765,2.47e-29,90;UBERON:0002405,5.15e-28,93;UBERON:0001434,3.01e-25,100;UBERON:0003081,3.17e-16,203;UBERON:0002204,4.60e-13,167;UBERON:0002384,3.60e-11,371;UBERON:0000178,2.58e-09,15;UBERON:0000179,2.58e-09,15;UBERON:0000463,2.58e-09,15;UBERON:0000926,4.71e-09,315;UBERON:0004120,4.71e-09,315;UBERON:0006603,4.71e-09,315|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,1.68109492645493,0.903106483949403,1.18066171970519,2.36018566109342,1.15148819429164,3.2511385896376,0,0.30120591877825,0,0.0774672005803016,0,0.587200878669695,13.2958898047651,6.21687787157439,8.68043482863407,0,0,0,0.290796477559129,0.377875943688809,0.242584061187816,0.697287110717054,0,1.85823822537062,6.04154023876516,2.30544635876191,4.25668013799453,7.92915065694223,3.22742341791913,6.77132432971709,0.564727018627814,0,1.57306439111559,7.34601341690166,8.98601275813062,14.0654167675789,0.329851300186716,0.398927315243264,1.27867425159808,3.48251086354301,3.40431134814684,10.5879782329248,2.51248665256743,2.08593167368081,1.73751075764093,4.84319602106695,9.57521853567668,7.91155968602211,1.05627643155971,1.27562579979026,1.67726916406701,1.01095768031846,1.05123824989054,0.32145117339416,0.855038231223746,0.79566670879636,1.64397738388171,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0.569212969109448,0,0.382273228125229,1.32171328579026,2.80254281490768,0.263384084775077,0.196709770113833,0.393010762749165,1.43921049299656,0,0,0,1.94826728407911,0.668462741311041,0,0,0.270803863765016,0.128091319725675,0.130059347559878,0.164437904603676,0.276350017785848,0,0,0.267540828089713,0,0,0,0.68725489096526,0.253019692019503,0,0,0,0.301150238155546,0,0,0,0,1.61285394579786,0.802320587350522,0.868946423296794,0,0.670700859703636,0.255725123687061,0,0,0.289693037921647,0,0,0.0945348171640679,0.221729397462564,0.351339142772504,1.57174890597255,0,0,1.9472843619281,1.3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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57149 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25074 | |||
|TSSclassifier=S | |||
|UniProt=O43325 | |||
|association_with_transcript=-10bp_to_ENST00000396052,uc002dib.2_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_8_at_LYRM1_5end | |||
|id=chr16:20912382..20912415,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.20e-21!42;CL:0000860!7.94e-20!45;CL:0000766!3.35e-17!76;CL:0000557!8.80e-17!71;CL:0000037!1.14e-16!172;CL:0000566!1.14e-16!172;CL:0000763!1.24e-16!112;CL:0000049!1.24e-16!112;CL:0002032!3.67e-16!165;CL:0000837!3.67e-16!165;CL:0000738!3.67e-16!140;CL:0000988!1.50e-15!182;CL:0000839!4.97e-14!70;CL:0002031!7.04e-14!124;CL:0002009!1.78e-13!65;CL:0002194!1.81e-12!63;CL:0000576!1.81e-12!63;CL:0000040!1.81e-12!63;CL:0000559!1.81e-12!63;CL:0002087!2.04e-12!119;CL:0002393!6.26e-07!9;CL:0002397!6.26e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.09e-28;33!CL:0002057;1.09e-28;33!CL:0000576;4.06e-22;48!CL:0000473;2.14e-19;39!CL:0000234;2.14e-19;39!CL:0000766;9.22e-18;69!CL:0002393;2.34e-13;6!CL:0002397;2.34e-13;6!CL:0002087;8.85e-11;104!CL:0000763;5.28e-10;100!CL:0000840;1.57e-08;5!CL:0000738;6.87e-08;136!CL:0000097;7.05e-08;5!CL:0000623;1.06e-07;3!CL:0000767;2.25e-07;3!CL:0000988;2.71e-07;177!CL:0000094;3.46e-07;8!CL:0000226;5.75e-07;3!CL:0000842;5.75e-07;3!CL:0000081;6.00e-07;11 | |||
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|ontology_enrichment_development_v019=CL:0002057;8.61e-28;42!CL:0000049;1.05e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.53e-16!102;UBERON:0003061!5.53e-16!102;UBERON:0002371!6.80e-15!80;UBERON:0002193!2.13e-14!112;UBERON:0001474!7.55e-13!86;UBERON:0002405!6.87e-10!115;UBERON:0004765!3.01e-09!101;UBERON:0001434!3.01e-09!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.79e-09;15!UBERON:0000179;1.79e-09;15!UBERON:0000463;1.79e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.10e-41,98;UBERON:0003061,2.10e-41,98;UBERON:0002371,7.12e-37,76;UBERON:0002193,2.79e-36,108;UBERON:0001474,2.52e-33,82;UBERON:0004765,2.47e-29,90;UBERON:0002405,5.15e-28,93;UBERON:0001434,3.01e-25,100;UBERON:0003081,3.17e-16,203;UBERON:0002204,4.60e-13,167;UBERON:0002384,3.60e-11,371;UBERON:0000178,2.58e-09,15;UBERON:0000179,2.58e-09,15;UBERON:0000463,2.58e-09,15;UBERON:0000926,4.71e-09,315;UBERON:0004120,4.71e-09,315;UBERON:0006603,4.71e-09,315 | |||
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| |||
|short_description=p8@LYRM1 | |||
}} |
Revision as of 09:37, 11 September 2013
Short description: | p8@LYRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_LYRM1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -10bp_to_ENST00000396052, uc002dib.2_5end |
EntrezGene: | LYRM1 |
HGNC: | 25074 |
UniProt: | O43325 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.10e-41 | 98 |
blood island | 2.10e-41 | 98 |
bone marrow | 7.12e-37 | 76 |
hemolymphoid system | 2.79e-36 | 108 |
bone element | 2.52e-33 | 82 |
skeletal element | 2.47e-29 | 90 |
immune system | 5.15e-28 | 93 |
skeletal system | 3.01e-25 | 100 |
lateral plate mesoderm | 3.17e-16 | 203 |
musculoskeletal system | 4.60e-13 | 167 |
connective tissue | 3.60e-11 | 371 |
blood | 2.58e-09 | 15 |
haemolymphatic fluid | 2.58e-09 | 15 |
organism substance | 2.58e-09 | 15 |
mesoderm | 4.71e-09 | 315 |
mesoderm-derived structure | 4.71e-09 | 315 |
presumptive mesoderm | 4.71e-09 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.