FFCP PHASE1:Hg19::chr18:46056893..46056925,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C24|description=CAGE_peak_at_chr18:46056893..46056925,-|id=chr18:46056893..46056925,-|ontology_enrichment_celltype=CL:0002615!9.09e-09!3;CL:0002621!9.09e-09!3;CL:0002166!1.96e-08!3;CL:0002579!2.11e-08!3|ontology_enrichment_celltype_v019=CL:0000082;1.91e-11;19|ontology_enrichment_celltype_v019_2=CL:0000082,1.91e-11,19|ontology_enrichment_development_v019=UBERON:0008947;7.40e-08;29!UBERON:0001041;1.25e-07;30|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3905;7.17e-23;9!DOID:4556;9.46e-18;3!DOID:1324;3.36e-14;15!DOID:5409;1.29e-13;4!DOID:0050615;2.21e-13;16!DOID:3908;3.26e-11;5!DOID:1325;2.35e-08;7!DOID:3904;2.35e-08;7|ontology_enrichment_disease_v019_2=DOID:3905,7.17e-23,9;DOID:4556,9.46e-18,3;DOID:1324,3.36e-14,15;DOID:5409,1.29e-13,4;DOID:0050615,2.21e-13,16;DOID:3908,3.26e-11,5;DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7|ontology_enrichment_uberon=UBERON:0003688!1.75e-15!6;UBERON:0002358!1.75e-15!6;UBERON:0003684!1.75e-15!6;UBERON:0001178!1.75e-15!6;UBERON:0001905!2.03e-13!2;UBERON:0002757!2.03e-13!2;UBERON:0010134!2.03e-13!2;UBERON:0002784!2.03e-13!2;UBERON:0005408!2.03e-13!2;UBERON:0001899!2.03e-13!2;UBERON:0000966!2.51e-11!5;UBERON:0005388!2.51e-11!5;UBERON:0001802!2.51e-11!5;UBERON:0001949!9.09e-09!3;UBERON:0000475!2.97e-08!365;UBERON:0004457!8.37e-08!12;UBERON:0000042!8.37e-08!12;UBERON:0003296!4.07e-07!4;UBERON:0010133!4.07e-07!4;UBERON:0001828!4.37e-07!8;UBERON:0002038!6.49e-07!1;UBERON:0009661!6.49e-07!1;UBERON:0001282!8.18e-07!1;UBERON:0009842!8.18e-07!1;UBERON:0003704!8.18e-07!1;UBERON:0001171!8.18e-07!1;UBERON:0001172!8.18e-07!1;UBERON:0000153!8.26e-07!129;UBERON:0007811!8.26e-07!129|ontology_enrichment_uberon_v019=UBERON:0001905;5.68e-99;2!UBERON:0002757;5.68e-99;2!UBERON:0010134;5.68e-99;2!UBERON:0005408;5.68e-99;2!UBERON:0001899;5.68e-99;2!UBERON:0003296;3.11e-50;4!UBERON:0010133;3.11e-50;4!UBERON:0002784;3.11e-50;4!UBERON:0001894;2.74e-29;7!UBERON:0004802;1.91e-11;19!UBERON:0000115;1.91e-11;19!UBERON:0002048;4.96e-10;22!UBERON:0004807;4.96e-10;22!UBERON:0000117;4.96e-10;22!UBERON:0000171;4.96e-10;22!UBERON:0000170;4.96e-10;22|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.68e-99,2;UBERON:0002757,5.68e-99,2;UBERON:0010134,5.68e-99,2;UBERON:0005408,5.68e-99,2;UBERON:0001899,5.68e-99,2;UBERON:0003296,3.11e-50,4;UBERON:0010133,3.11e-50,4;UBERON:0002784,3.11e-50,4;UBERON:0001894,2.74e-29,7;UBERON:0006222,2.74e-29,7;UBERON:0004802,1.91e-11,19;UBERON:0000115,1.91e-11,19;UBERON:0002048,4.96e-10,22;UBERON:0000117,4.96e-10,22;UBERON:0000171,4.96e-10,22;UBERON:0000170,4.96e-10,22;UBERON:0005597,4.96e-10,22;UBERON:0000118,4.96e-10,22;UBERON:0004807,4.21e-08,28;UBERON:0005178,7.59e-07,34;UBERON:0002224,7.59e-07,34;UBERON:0002368,9.98e-07,35|phase1_expression=0,0,0.281908808191942,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.12360880465543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553394539744923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.1424587481052,79.3629584436425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714765441766563,0.47404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20934568419972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr18:46056893..46056925,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_at_chr18:46056893..46056925,- | |||
|id=chr18:46056893..46056925,- | |||
|ontology_enrichment_celltype=CL:0002615!9.09e-09!3;CL:0002621!9.09e-09!3;CL:0002166!1.96e-08!3;CL:0002579!2.11e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000082;1.91e-11;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,1.91e-11,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.40e-08;29!UBERON:0001041;1.25e-07;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3905;7.17e-23;9!DOID:4556;9.46e-18;3!DOID:1324;3.36e-14;15!DOID:5409;1.29e-13;4!DOID:0050615;2.21e-13;16!DOID:3908;3.26e-11;5!DOID:1325;2.35e-08;7!DOID:3904;2.35e-08;7 | |||
|ontology_enrichment_disease_v019_2=DOID:3905,7.17e-23,9;DOID:4556,9.46e-18,3;DOID:1324,3.36e-14,15;DOID:5409,1.29e-13,4;DOID:0050615,2.21e-13,16;DOID:3908,3.26e-11,5;DOID:1325,2.35e-08,7;DOID:3904,2.35e-08,7 | |||
|ontology_enrichment_uberon=UBERON:0003688!1.75e-15!6;UBERON:0002358!1.75e-15!6;UBERON:0003684!1.75e-15!6;UBERON:0001178!1.75e-15!6;UBERON:0001905!2.03e-13!2;UBERON:0002757!2.03e-13!2;UBERON:0010134!2.03e-13!2;UBERON:0002784!2.03e-13!2;UBERON:0005408!2.03e-13!2;UBERON:0001899!2.03e-13!2;UBERON:0000966!2.51e-11!5;UBERON:0005388!2.51e-11!5;UBERON:0001802!2.51e-11!5;UBERON:0001949!9.09e-09!3;UBERON:0000475!2.97e-08!365;UBERON:0004457!8.37e-08!12;UBERON:0000042!8.37e-08!12;UBERON:0003296!4.07e-07!4;UBERON:0010133!4.07e-07!4;UBERON:0001828!4.37e-07!8;UBERON:0002038!6.49e-07!1;UBERON:0009661!6.49e-07!1;UBERON:0001282!8.18e-07!1;UBERON:0009842!8.18e-07!1;UBERON:0003704!8.18e-07!1;UBERON:0001171!8.18e-07!1;UBERON:0001172!8.18e-07!1;UBERON:0000153!8.26e-07!129;UBERON:0007811!8.26e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;5.68e-99;2!UBERON:0002757;5.68e-99;2!UBERON:0010134;5.68e-99;2!UBERON:0005408;5.68e-99;2!UBERON:0001899;5.68e-99;2!UBERON:0003296;3.11e-50;4!UBERON:0010133;3.11e-50;4!UBERON:0002784;3.11e-50;4!UBERON:0001894;2.74e-29;7!UBERON:0004802;1.91e-11;19!UBERON:0000115;1.91e-11;19!UBERON:0002048;4.96e-10;22!UBERON:0004807;4.96e-10;22!UBERON:0000117;4.96e-10;22!UBERON:0000171;4.96e-10;22!UBERON:0000170;4.96e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.68e-99,2;UBERON:0002757,5.68e-99,2;UBERON:0010134,5.68e-99,2;UBERON:0005408,5.68e-99,2;UBERON:0001899,5.68e-99,2;UBERON:0003296,3.11e-50,4;UBERON:0010133,3.11e-50,4;UBERON:0002784,3.11e-50,4;UBERON:0001894,2.74e-29,7;UBERON:0006222,2.74e-29,7;UBERON:0004802,1.91e-11,19;UBERON:0000115,1.91e-11,19;UBERON:0002048,4.96e-10,22;UBERON:0000117,4.96e-10,22;UBERON:0000171,4.96e-10,22;UBERON:0000170,4.96e-10,22;UBERON:0005597,4.96e-10,22;UBERON:0000118,4.96e-10,22;UBERON:0004807,4.21e-08,28;UBERON:0005178,7.59e-07,34;UBERON:0002224,7.59e-07,34;UBERON:0002368,9.98e-07,35 | |||
|phase1_expression=0,0,0.281908808191942,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658156191461918,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.12360880465543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553394539744923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.1424587481052,79.3629584436425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714765441766563,0.47404083519818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20934568419972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr18:46056893..46056925,- | |||
}} |
Revision as of 17:36, 11 September 2013
Short description: | p@chr18:46056893..46056925, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:46056893..46056925, - |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 1.91e-11 | 19 |
Ontology term | p-value | n |
---|---|---|
pineal body | 5.68e-99 | 2 |
regional part of epithalamus | 5.68e-99 | 2 |
secretory circumventricular organ | 5.68e-99 | 2 |
circumventricular organ | 5.68e-99 | 2 |
epithalamus | 5.68e-99 | 2 |
gland of diencephalon | 3.11e-50 | 4 |
neuroendocrine gland | 3.11e-50 | 4 |
regional part of diencephalon | 3.11e-50 | 4 |
diencephalon | 2.74e-29 | 7 |
future diencephalon | 2.74e-29 | 7 |
respiratory tract epithelium | 1.91e-11 | 19 |
lung epithelium | 1.91e-11 | 19 |
lung | 4.96e-10 | 22 |
respiratory tube | 4.96e-10 | 22 |
respiration organ | 4.96e-10 | 22 |
pair of lungs | 4.96e-10 | 22 |
lung primordium | 4.96e-10 | 22 |
lung bud | 4.96e-10 | 22 |
respiratory system epithelium | 4.21e-08 | 28 |
thoracic cavity element | 7.59e-07 | 34 |
thoracic cavity | 7.59e-07 | 34 |
endocrine gland | 9.98e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
lung carcinoma | 7.17e-23 | 9 |
lung large cell carcinoma | 9.46e-18 | 3 |
lung cancer | 3.36e-14 | 15 |
lung small cell carcinoma | 1.29e-13 | 4 |
respiratory system cancer | 2.21e-13 | 16 |
non-small cell lung carcinoma | 3.26e-11 | 5 |
bronchus cancer | 2.35e-08 | 7 |
bronchogenic carcinoma | 2.35e-08 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.