FFCP PHASE1:Hg19::chr18:66861303..66861304,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C87|description=CAGE_peak_at_chr18:66861303..66861304,-|id=chr18:66861303..66861304,-|ontology_enrichment_celltype=CL:0002319!1.23e-07!25|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003056;1.92e-53;3!UBERON:0005425;1.81e-40;1!UBERON:0006215;1.71e-14;3|ontology_enrichment_disease=DOID:630!1.25e-09!1;DOID:0050177!1.25e-09!1;DOID:0050427!1.25e-09!1|ontology_enrichment_disease_v019=DOID:5409;3.26e-11;4!DOID:4362;3.10e-09;5!DOID:1325;5.86e-07;7!DOID:3904;5.86e-07;7|ontology_enrichment_disease_v019_2=DOID:5409,2.80e-11,4;DOID:4362,3.49e-09,5;DOID:1325,5.38e-07,7;DOID:3904,5.38e-07,7|ontology_enrichment_uberon=UBERON:0004732!6.56e-16!13;UBERON:0002680!6.65e-15!9;UBERON:0001895!6.65e-15!9;UBERON:0010092!6.65e-15!9;UBERON:0000988!1.21e-11!3;UBERON:0004733!3.13e-11!12;UBERON:0002028!3.13e-11!12;UBERON:0007277!3.13e-11!12;UBERON:0000941!4.87e-10!1;UBERON:0004904!4.87e-10!1;UBERON:0002464!4.87e-10!1;UBERON:0001021!4.87e-10!1;UBERON:0001785!4.87e-10!1;UBERON:0007029!8.91e-10!1;UBERON:0001000!9.70e-10!1;UBERON:0005352!9.70e-10!1;UBERON:0003076!5.11e-09!15;UBERON:0003057!5.11e-09!15;UBERON:0000073!1.21e-08!94;UBERON:0001016!1.21e-08!94;UBERON:0001017!2.20e-08!82;UBERON:0005743!6.24e-08!86;UBERON:0000924!8.01e-07!173;UBERON:0006601!8.01e-07!173|ontology_enrichment_uberon_v019=UBERON:0000941;1.81e-40;1!UBERON:0001785;1.81e-40;1!UBERON:0002464;1.81e-40;1!UBERON:0004904;1.81e-40;1!UBERON:0001021;1.81e-40;1!UBERON:0003714;5.15e-21;2!UBERON:0005162;5.15e-21;2!UBERON:0000122;5.15e-21;2!UBERON:0004732;3.43e-13;13!UBERON:0000966;2.53e-09;5!UBERON:0005388;2.53e-09;5!UBERON:0001802;2.53e-09;5!UBERON:0002104;1.34e-08;21!UBERON:0000002;6.55e-08;6!UBERON:0002037;6.55e-08;6!UBERON:0001560;6.55e-08;6!UBERON:0001032;1.21e-07;24!UBERON:0004456;1.21e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.21e-40,1;UBERON:0001785,2.21e-40,1;UBERON:0002464,2.21e-40,1;UBERON:0004904,2.21e-40,1;UBERON:0001021,2.21e-40,1;UBERON:0003902,2.21e-40,1;UBERON:0005425,2.21e-40,1;UBERON:0000966,2.38e-27,6;UBERON:0005388,2.38e-27,6;UBERON:0001802,2.38e-27,6;UBERON:0003714,5.70e-21,2;UBERON:0005162,5.70e-21,2;UBERON:0000122,5.70e-21,2;UBERON:0004732,3.43e-13,13;UBERON:0001781,3.42e-11,4;UBERON:0000019,5.70e-09,20;UBERON:0000047,5.70e-09,20;UBERON:0010312,5.70e-09,20;UBERON:0004088,5.70e-09,20;UBERON:0010230,5.70e-09,20;UBERON:0003072,5.70e-09,20;UBERON:0004128,5.70e-09,20;UBERON:0003071,5.70e-09,20;UBERON:0000970,1.37e-08,21;UBERON:0002104,1.37e-08,21;UBERON:0001456,3.04e-08,22;UBERON:0002037,6.34e-08,6;UBERON:0006215,6.34e-08,6;UBERON:0000002,7.25e-08,6;UBERON:0001560,7.25e-08,6;UBERON:0000020,1.23e-07,24;UBERON:0001032,1.23e-07,24;UBERON:0004456,1.23e-07,24|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0.296573126324121,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0.331737779793674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691743174681154,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,21.4898511956508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,1.16969731731053,0,0,0,1.64910775118144,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C87 | |||
|description=CAGE_peak_at_chr18:66861303..66861304,- | |||
|id=chr18:66861303..66861304,- | |||
|ontology_enrichment_celltype=CL:0002319!1.23e-07!25 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.92e-53;3!UBERON:0005425;1.81e-40;1!UBERON:0006215;1.71e-14;3 | |||
|ontology_enrichment_disease=DOID:630!1.25e-09!1;DOID:0050177!1.25e-09!1;DOID:0050427!1.25e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:5409;3.26e-11;4!DOID:4362;3.10e-09;5!DOID:1325;5.86e-07;7!DOID:3904;5.86e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.80e-11,4;DOID:4362,3.49e-09,5;DOID:1325,5.38e-07,7;DOID:3904,5.38e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0004732!6.56e-16!13;UBERON:0002680!6.65e-15!9;UBERON:0001895!6.65e-15!9;UBERON:0010092!6.65e-15!9;UBERON:0000988!1.21e-11!3;UBERON:0004733!3.13e-11!12;UBERON:0002028!3.13e-11!12;UBERON:0007277!3.13e-11!12;UBERON:0000941!4.87e-10!1;UBERON:0004904!4.87e-10!1;UBERON:0002464!4.87e-10!1;UBERON:0001021!4.87e-10!1;UBERON:0001785!4.87e-10!1;UBERON:0007029!8.91e-10!1;UBERON:0001000!9.70e-10!1;UBERON:0005352!9.70e-10!1;UBERON:0003076!5.11e-09!15;UBERON:0003057!5.11e-09!15;UBERON:0000073!1.21e-08!94;UBERON:0001016!1.21e-08!94;UBERON:0001017!2.20e-08!82;UBERON:0005743!6.24e-08!86;UBERON:0000924!8.01e-07!173;UBERON:0006601!8.01e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.81e-40;1!UBERON:0001785;1.81e-40;1!UBERON:0002464;1.81e-40;1!UBERON:0004904;1.81e-40;1!UBERON:0001021;1.81e-40;1!UBERON:0003714;5.15e-21;2!UBERON:0005162;5.15e-21;2!UBERON:0000122;5.15e-21;2!UBERON:0004732;3.43e-13;13!UBERON:0000966;2.53e-09;5!UBERON:0005388;2.53e-09;5!UBERON:0001802;2.53e-09;5!UBERON:0002104;1.34e-08;21!UBERON:0000002;6.55e-08;6!UBERON:0002037;6.55e-08;6!UBERON:0001560;6.55e-08;6!UBERON:0001032;1.21e-07;24!UBERON:0004456;1.21e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.21e-40,1;UBERON:0001785,2.21e-40,1;UBERON:0002464,2.21e-40,1;UBERON:0004904,2.21e-40,1;UBERON:0001021,2.21e-40,1;UBERON:0003902,2.21e-40,1;UBERON:0005425,2.21e-40,1;UBERON:0000966,2.38e-27,6;UBERON:0005388,2.38e-27,6;UBERON:0001802,2.38e-27,6;UBERON:0003714,5.70e-21,2;UBERON:0005162,5.70e-21,2;UBERON:0000122,5.70e-21,2;UBERON:0004732,3.43e-13,13;UBERON:0001781,3.42e-11,4;UBERON:0000019,5.70e-09,20;UBERON:0000047,5.70e-09,20;UBERON:0010312,5.70e-09,20;UBERON:0004088,5.70e-09,20;UBERON:0010230,5.70e-09,20;UBERON:0003072,5.70e-09,20;UBERON:0004128,5.70e-09,20;UBERON:0003071,5.70e-09,20;UBERON:0000970,1.37e-08,21;UBERON:0002104,1.37e-08,21;UBERON:0001456,3.04e-08,22;UBERON:0002037,6.34e-08,6;UBERON:0006215,6.34e-08,6;UBERON:0000002,7.25e-08,6;UBERON:0001560,7.25e-08,6;UBERON:0000020,1.23e-07,24;UBERON:0001032,1.23e-07,24;UBERON:0004456,1.23e-07,24 | |||
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|short_description=p@chr18:66861303..66861304,- | |||
}} |
Revision as of 18:05, 11 September 2013
Short description: | p@chr18:66861303..66861304, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:66861303..66861304, - |
Coexpression cluster: | C87_retinoblastoma_left_nonsmall_heart_small_diaphragm_bronchogenic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.21e-40 | 1 |
cranial nerve | 2.21e-40 | 1 |
nerve trunk | 2.21e-40 | 1 |
nerve connecting eye with brain | 2.21e-40 | 1 |
nerve | 2.21e-40 | 1 |
retinal neural layer | 2.21e-40 | 1 |
presumptive neural retina | 2.21e-40 | 1 |
retina | 2.38e-27 | 6 |
photoreceptor array | 2.38e-27 | 6 |
posterior segment of eyeball | 2.38e-27 | 6 |
neural tissue | 5.70e-21 | 2 |
multi cell component structure | 5.70e-21 | 2 |
neuron projection bundle | 5.70e-21 | 2 |
segmental subdivision of nervous system | 3.43e-13 | 13 |
layer of retina | 3.42e-11 | 4 |
camera-type eye | 5.70e-09 | 20 |
simple eye | 5.70e-09 | 20 |
immature eye | 5.70e-09 | 20 |
ocular region | 5.70e-09 | 20 |
eyeball of camera-type eye | 5.70e-09 | 20 |
optic cup | 5.70e-09 | 20 |
optic vesicle | 5.70e-09 | 20 |
eye primordium | 5.70e-09 | 20 |
eye | 1.37e-08 | 21 |
visual system | 1.37e-08 | 21 |
face | 3.04e-08 | 22 |
cerebellum | 6.34e-08 | 6 |
rhombic lip | 6.34e-08 | 6 |
uterine cervix | 7.25e-08 | 6 |
neck of organ | 7.25e-08 | 6 |
sense organ | 1.23e-07 | 24 |
sensory system | 1.23e-07 | 24 |
entire sense organ system | 1.23e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.80e-11 | 4 |
cervical cancer | 3.49e-09 | 5 |
bronchus cancer | 5.38e-07 | 7 |
bronchogenic carcinoma | 5.38e-07 | 7 |
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