FFCP PHASE1:Hg19::chr19:47693677..47693693,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C21|description=CAGE_peak_at_chr19:47693677..47693693,+|id=chr19:47693677..47693693,+|ontology_enrichment_celltype=CL:0002139!1.63e-18!24;CL:0000071!1.14e-15!18;CL:0002546!1.14e-15!18;CL:0000115!1.59e-15!35;CL:0000213!6.38e-15!57;CL:0000215!6.38e-15!57;CL:0002078!3.73e-12!44;CL:1000413!4.90e-10!9;CL:0000066!8.16e-10!254;CL:0000147!6.48e-09!14;CL:0002543!2.20e-07!6;CL:0002544!2.90e-07!6|ontology_enrichment_celltype_v019=CL:0002139;2.26e-38;24!CL:0000115;1.69e-32;36!CL:0000071;3.34e-31;18!CL:1000413;2.42e-21;9!CL:0002543;1.38e-18;6!CL:0002078;1.83e-17;45!CL:0000213;8.31e-16;58!CL:0000215;8.31e-16;58!CL:0000148;2.64e-15;10!CL:0000147;1.36e-13;14!CL:0002544;2.33e-13;6!CL:0000624;2.74e-12;6!CL:0002567;5.15e-11;3!CL:1000746;1.38e-10;7!CL:1000612;1.38e-10;7!CL:0002618;5.71e-10;3!CL:0002188;6.47e-10;5!CL:0002138;8.04e-09;6!CL:0000710;4.29e-07;20|ontology_enrichment_celltype_v019_2=CL:0002139,1.49e-38,24;CL:0000115,9.71e-37,36;CL:0000071,1.83e-31,18;CL:0002546,1.83e-31,18;CL:0002078,3.46e-28,45;CL:0000213,1.02e-22,58;CL:0000215,1.02e-22,58;CL:1000413,1.50e-21,9;CL:0002543,1.08e-18,6;CL:0000148,2.66e-15,10;CL:0000541,2.66e-15,10;CL:0000147,1.06e-13,14;CL:0002544,1.66e-13,6;CL:0000624,2.69e-12,6;CL:0000066,2.07e-11,253;CL:0002567,4.78e-11,3;CL:1000746,1.73e-10,7;CL:1000612,1.73e-10,7;CL:0002618,4.91e-10,3;CL:0002188,5.70e-10,5;CL:0000076,5.33e-09,63;CL:0000222,8.20e-09,121;CL:0005020,9.31e-09,6;CL:0002138,9.31e-09,6;CL:0005022,9.31e-09,6;CL:0000710,4.30e-07,20|ontology_enrichment_development_v019=CL:0002546;3.34e-31;18!CL:0005022;8.04e-09;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3493;8.37e-07;2|ontology_enrichment_disease_v019_2=DOID:3493,8.15e-07,2|ontology_enrichment_uberon=UBERON:0001986!1.14e-15!18;UBERON:0004638!1.14e-15!18;UBERON:0004852!1.14e-15!18;UBERON:0000487!8.84e-15!22;UBERON:0006914!2.73e-13!25;UBERON:0003915!4.90e-10!9;UBERON:0004700!4.90e-10!9;UBERON:0001917!4.90e-10!9;UBERON:0001009!6.12e-09!113;UBERON:0004535!1.81e-08!110;UBERON:0002049!9.43e-08!79;UBERON:0007798!9.43e-08!79;UBERON:0000055!2.50e-07!69;UBERON:0003914!6.73e-07!118|ontology_enrichment_uberon_v019=UBERON:0004638;3.34e-31;18!UBERON:0001986;3.34e-31;18!UBERON:0004852;3.34e-31;18!UBERON:0000487;6.90e-25;22!UBERON:0006914;1.76e-21;25!UBERON:0003915;2.42e-21;9!UBERON:0004700;2.42e-21;9!UBERON:0001917;2.42e-21;9!UBERON:0000490;1.40e-14;33!UBERON:0001638;3.73e-12;9!UBERON:0003920;3.73e-12;9!UBERON:0004582;3.73e-12;9!UBERON:0000074;1.38e-10;7!UBERON:0001229;1.38e-10;7!UBERON:0002465;1.04e-07;10!UBERON:0000055;5.02e-07;65|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.83e-31,18;UBERON:0001986,1.83e-31,18;UBERON:0004852,1.83e-31,18;UBERON:0000487,4.25e-25,22;UBERON:0006914,1.16e-21,25;UBERON:0003915,1.50e-21,9;UBERON:0004700,1.50e-21,9;UBERON:0001917,1.50e-21,9;UBERON:0001638,3.19e-12,9;UBERON:0003920,3.19e-12,9;UBERON:0004582,3.19e-12,9;UBERON:0000055,1.34e-10,68;UBERON:0010532,1.73e-10,7;UBERON:0000074,1.73e-10,7;UBERON:0001229,1.73e-10,7;UBERON:0001230,1.73e-10,7;UBERON:0003220,1.73e-10,7;UBERON:0005749,1.73e-10,7;UBERON:0004199,1.73e-10,7;UBERON:0004209,1.73e-10,7;UBERON:0004198,1.73e-10,7;UBERON:0004535,1.47e-09,109;UBERON:0001009,3.73e-09,112;UBERON:0005103,3.87e-09,8;UBERON:0000083,3.87e-09,8;UBERON:0009201,3.87e-09,8;UBERON:0006553,3.87e-09,8;UBERON:0003074,3.87e-09,8;UBERON:0003060,3.87e-09,8;UBERON:0002049,1.08e-08,78;UBERON:0007798,1.08e-08,78;UBERON:0000080,4.34e-08,9;UBERON:0002120,4.34e-08,9;UBERON:0004875,4.34e-08,9;UBERON:0005721,4.34e-08,9;UBERON:0005754,4.34e-08,9;UBERON:0007297,4.34e-08,9;UBERON:0002465,1.29e-07,10;UBERON:0007500,2.76e-07,59;UBERON:0001981,2.76e-07,59;UBERON:0004537,2.76e-07,59;UBERON:0006965,2.76e-07,59|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.408001382488506,0.313454721478088,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0.601633342410425,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.180258620683,2.75107533924415,1.23360899399706,2.00623794468814,0,0.473447805734733,0,0.779873198196215,1.76763544484902,2.21533894583621,1.08321545506006,0.512365278902701,0.260118695119756,0,0,0,0.741432815810302,0,1.04535523804977,0.339928028092699,1.14966148080576,2.74901956386104,3.03623630423403,0.637130828648193,0.651083453856419,0.950452044448374,0.451725357233318,0.127986611154418,0,0.710331756132051,0,0,0.267440195783507,0.579297615531196,0,2.01210257911091,0,0,0,0,0,0,0.661743720148475,0.221729397462564,0.351339142772504,0.196468613246569,0,0,0,0,0,0,0,0,3.57772333260069,1.72046919021225,3.12426451446835,3.95715559346807,1.25849830862972,1.6507082516404,3.13492449805216,6.97725249757188,2.49036383880697,3.3472061276467,0.4028293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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_at_chr19:47693677..47693693,+ | |||
|id=chr19:47693677..47693693,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.63e-18!24;CL:0000071!1.14e-15!18;CL:0002546!1.14e-15!18;CL:0000115!1.59e-15!35;CL:0000213!6.38e-15!57;CL:0000215!6.38e-15!57;CL:0002078!3.73e-12!44;CL:1000413!4.90e-10!9;CL:0000066!8.16e-10!254;CL:0000147!6.48e-09!14;CL:0002543!2.20e-07!6;CL:0002544!2.90e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.26e-38;24!CL:0000115;1.69e-32;36!CL:0000071;3.34e-31;18!CL:1000413;2.42e-21;9!CL:0002543;1.38e-18;6!CL:0002078;1.83e-17;45!CL:0000213;8.31e-16;58!CL:0000215;8.31e-16;58!CL:0000148;2.64e-15;10!CL:0000147;1.36e-13;14!CL:0002544;2.33e-13;6!CL:0000624;2.74e-12;6!CL:0002567;5.15e-11;3!CL:1000746;1.38e-10;7!CL:1000612;1.38e-10;7!CL:0002618;5.71e-10;3!CL:0002188;6.47e-10;5!CL:0002138;8.04e-09;6!CL:0000710;4.29e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.49e-38,24;CL:0000115,9.71e-37,36;CL:0000071,1.83e-31,18;CL:0002546,1.83e-31,18;CL:0002078,3.46e-28,45;CL:0000213,1.02e-22,58;CL:0000215,1.02e-22,58;CL:1000413,1.50e-21,9;CL:0002543,1.08e-18,6;CL:0000148,2.66e-15,10;CL:0000541,2.66e-15,10;CL:0000147,1.06e-13,14;CL:0002544,1.66e-13,6;CL:0000624,2.69e-12,6;CL:0000066,2.07e-11,253;CL:0002567,4.78e-11,3;CL:1000746,1.73e-10,7;CL:1000612,1.73e-10,7;CL:0002618,4.91e-10,3;CL:0002188,5.70e-10,5;CL:0000076,5.33e-09,63;CL:0000222,8.20e-09,121;CL:0005020,9.31e-09,6;CL:0002138,9.31e-09,6;CL:0005022,9.31e-09,6;CL:0000710,4.30e-07,20 | |||
|ontology_enrichment_development_v019=CL:0002546;3.34e-31;18!CL:0005022;8.04e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;8.37e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,8.15e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001986!1.14e-15!18;UBERON:0004638!1.14e-15!18;UBERON:0004852!1.14e-15!18;UBERON:0000487!8.84e-15!22;UBERON:0006914!2.73e-13!25;UBERON:0003915!4.90e-10!9;UBERON:0004700!4.90e-10!9;UBERON:0001917!4.90e-10!9;UBERON:0001009!6.12e-09!113;UBERON:0004535!1.81e-08!110;UBERON:0002049!9.43e-08!79;UBERON:0007798!9.43e-08!79;UBERON:0000055!2.50e-07!69;UBERON:0003914!6.73e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.34e-31;18!UBERON:0001986;3.34e-31;18!UBERON:0004852;3.34e-31;18!UBERON:0000487;6.90e-25;22!UBERON:0006914;1.76e-21;25!UBERON:0003915;2.42e-21;9!UBERON:0004700;2.42e-21;9!UBERON:0001917;2.42e-21;9!UBERON:0000490;1.40e-14;33!UBERON:0001638;3.73e-12;9!UBERON:0003920;3.73e-12;9!UBERON:0004582;3.73e-12;9!UBERON:0000074;1.38e-10;7!UBERON:0001229;1.38e-10;7!UBERON:0002465;1.04e-07;10!UBERON:0000055;5.02e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.83e-31,18;UBERON:0001986,1.83e-31,18;UBERON:0004852,1.83e-31,18;UBERON:0000487,4.25e-25,22;UBERON:0006914,1.16e-21,25;UBERON:0003915,1.50e-21,9;UBERON:0004700,1.50e-21,9;UBERON:0001917,1.50e-21,9;UBERON:0001638,3.19e-12,9;UBERON:0003920,3.19e-12,9;UBERON:0004582,3.19e-12,9;UBERON:0000055,1.34e-10,68;UBERON:0010532,1.73e-10,7;UBERON:0000074,1.73e-10,7;UBERON:0001229,1.73e-10,7;UBERON:0001230,1.73e-10,7;UBERON:0003220,1.73e-10,7;UBERON:0005749,1.73e-10,7;UBERON:0004199,1.73e-10,7;UBERON:0004209,1.73e-10,7;UBERON:0004198,1.73e-10,7;UBERON:0004535,1.47e-09,109;UBERON:0001009,3.73e-09,112;UBERON:0005103,3.87e-09,8;UBERON:0000083,3.87e-09,8;UBERON:0009201,3.87e-09,8;UBERON:0006553,3.87e-09,8;UBERON:0003074,3.87e-09,8;UBERON:0003060,3.87e-09,8;UBERON:0002049,1.08e-08,78;UBERON:0007798,1.08e-08,78;UBERON:0000080,4.34e-08,9;UBERON:0002120,4.34e-08,9;UBERON:0004875,4.34e-08,9;UBERON:0005721,4.34e-08,9;UBERON:0005754,4.34e-08,9;UBERON:0007297,4.34e-08,9;UBERON:0002465,1.29e-07,10;UBERON:0007500,2.76e-07,59;UBERON:0001981,2.76e-07,59;UBERON:0004537,2.76e-07,59;UBERON:0006965,2.76e-07,59 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.408001382488506,0.313454721478088,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0.601633342410425,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.180258620683,2.75107533924415,1.23360899399706,2.00623794468814,0,0.473447805734733,0,0.779873198196215,1.76763544484902,2.21533894583621,1.08321545506006,0.512365278902701,0.260118695119756,0,0,0,0.741432815810302,0,1.04535523804977,0.339928028092699,1.14966148080576,2.74901956386104,3.03623630423403,0.637130828648193,0.651083453856419,0.950452044448374,0.451725357233318,0.127986611154418,0,0.710331756132051,0,0,0.267440195783507,0.579297615531196,0,2.01210257911091,0,0,0,0,0,0,0.661743720148475,0.221729397462564,0.351339142772504,0.196468613246569,0,0,0,0,0,0,0,0,3.57772333260069,1.72046919021225,3.12426451446835,3.95715559346807,1.25849830862972,1.6507082516404,3.13492449805216,6.97725249757188,2.49036383880697,3.3472061276467,0.402829317109147,0,0.732186172644509,0.735326160691737,2.43042584364528,2.50039239195423,1.57170560838319,2.0270066486998,1.53316637465883,4.74632829784064,3.29763139074733,0,0,0,0,0,0,0,0.354668382198357,0,0,0.24666754841716,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680593098960126,0,0,0,0,0.103052529238439,0.257640540045629,0,0,0.0974370051611986,0,0,0.646584227275248,0,0,0.169560592310488,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0.943819157121151,0.392442930250692,0.38474715694639,0.738155454624648,0,0.4115740113314,0,0,0,0,0,0.860919069801795,0.343135620597051,0,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0,1.14152491340759,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,14.3505241100302,3.4378958300245,15.2382681373061,5.13217338068116,1.02827492703324,1.8020583470635,4.57322292208925,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.599837947092342,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0.862510299438069,0.256686072559497,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0.393373244878272,0,0.15403067420883,0,0,0,3.4120015221269,1.02056223165909,1.94324324491925,1.54227252690289,0.812839312631559,1.00337954770971,0,0,0,0,0,0.512900250232778,1.96808787419823,0.325378394664303,0.103041011647722,0,0.742585499285292,0,0,0,0,0,0,0,0,0,0,0.534192213880424,0,0,0,0,0,0,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.286249773483982,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0.202910376962704,0,0,0,0,0.35667105148125,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,1.01489521846434,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0,0,0,0.640276590135727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0,0,0,0,0,0,0,2.74463030566391,0,0.276283915531148,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0.0927680981618513,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0.461701551022782,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,1.99052386215701,0.530745387020035,1.83309043480088,13.343450790628,27.1840665682306,27.5673946694402,0,0,0,0,0,0,0.789168805698781,0,0,0,0.150323419414493,0,0,0,0,0,0.284609546029793,0,1.56203764501618,0,0,0,0,0,0,0,0.0969890164884194,0,0.90392296312213,0,0,0,0.195551382734803,0,0.213452994739353,1.19885765749278,0.144090417154106,0.114536596165916,0,0,0.372757606696298,0.235694034616795,0.271808412147228,0.104602846312333,0.305994652908965,0,0,0,0,0,0.262887354279314,0,0.229160424011684,0,0.399358000997982,0.429226048136571,0,0.201550417460179,0,0,0.393915911536118,0.988990300573997,0.943649613958588,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.314727528809989,0,0,0,0,0,0,0,0,0,0,0,0,0.339936274560377,0,0,0,0,0.684347351537318,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,6.59627204250984,0,0,0,0,0,0,0,0,0.606596470166591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0.398095888698616,0.800055529326307,0,0,0,0,0.428883182749851,0.260994291965212,0.226705925512272,0.463044948647668,0,0.895444205407437,0.617602894321944,0.657852148736121,0,0.192914038270915,0,2.30617366729152,0,0,0,0.584580926518165,0.132864840313363,0.327130788511688,0,1.2288645437686,0,9.3994076051817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.60684897942564,0,0.6124909547064,0.0642292250964595,0,0,0,0,0.207471757392654,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0.739280431085226,0.0675375846183947,0,0.206686796501184,0,0.546974809018219,0,0,0,0.511049710558381,0,0,0,0,0.266107110487916,0,0,0.0679697329768317,0.131545547125698,0.354581522651905,1.11231401892069,1.33438257845874,0,0.560544326627578,0,0.431855182437243,0,0.64328889758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| |||
|short_description=p@chr19:47693677..47693693,+ | |||
}} |
Revision as of 21:28, 11 September 2013
Short description: | p@chr19:47693677..47693693, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:47693677..47693693, + |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.49e-38 | 24 |
endothelial cell | 9.71e-37 | 36 |
blood vessel endothelial cell | 1.83e-31 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.83e-31 | 18 |
meso-epithelial cell | 3.46e-28 | 45 |
lining cell | 1.02e-22 | 58 |
barrier cell | 1.02e-22 | 58 |
endothelial cell of artery | 1.50e-21 | 9 |
vein endothelial cell | 1.08e-18 | 6 |
melanocyte | 2.66e-15 | 10 |
melanoblast | 2.66e-15 | 10 |
pigment cell | 1.06e-13 | 14 |
aortic endothelial cell | 1.66e-13 | 6 |
CD4-positive, alpha-beta T cell | 2.69e-12 | 6 |
epithelial cell | 2.07e-11 | 253 |
light melanocyte | 4.78e-11 | 3 |
glomerular cell | 1.73e-10 | 7 |
kidney corpuscule cell | 1.73e-10 | 7 |
endothelial cell of umbilical vein | 4.91e-10 | 3 |
glomerular endothelial cell | 5.70e-10 | 5 |
squamous epithelial cell | 5.33e-09 | 63 |
mesodermal cell | 8.20e-09 | 121 |
lymphangioblast | 9.31e-09 | 6 |
endothelial cell of lymphatic vessel | 9.31e-09 | 6 |
vascular lymphangioblast | 9.31e-09 | 6 |
neurecto-epithelial cell | 4.30e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 8.15e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.