FFCP PHASE1:Hg19::chr4:169553987..169553999,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1861|description=CAGE_peak_at_chr4:169553987..169553999,+|id=chr4:169553987..169553999,+|ontology_enrichment_celltype=CL:0000128!5.31e-19!7;CL:0000126!5.31e-19!7;CL:0000127!5.31e-19!7;CL:0002453!5.31e-19!7;CL:0002605!4.80e-12!3;CL:0000064!3.78e-11!3;CL:0005012!3.78e-11!3;CL:0000067!3.78e-11!3;CL:0002304!3.78e-11!3;CL:0002319!1.93e-09!25;CL:0000221!1.60e-08!71;CL:0000243!2.41e-07!15;CL:0000125!2.41e-07!15;CL:0000030!2.41e-07!15;CL:0000339!2.41e-07!15;CL:0000133!5.26e-07!59|ontology_enrichment_celltype_v019=CL:0000128;6.94e-140;7!CL:0000126;6.94e-140;7!CL:0000127;6.94e-140;7!CL:0002605;6.36e-118;3!CL:0000243;2.99e-58;15!CL:0000125;2.99e-58;15!CL:0000095;3.17e-52;17!CL:0002319;4.92e-37;25!CL:0002603;2.09e-14;3|ontology_enrichment_celltype_v019_2=CL:0000128,6.94e-140,7;CL:0000126,6.94e-140,7;CL:0000127,6.94e-140,7;CL:0002453,6.94e-140,7;CL:0002605,7.78e-118,3;CL:0000243,2.99e-58,15;CL:0000125,2.99e-58,15;CL:0000030,2.99e-58,15;CL:0000339,2.99e-58,15;CL:0000095,3.17e-52,17;CL:0000123,3.17e-52,17;CL:0002319,4.92e-37,25;CL:0000333,1.42e-23,41;CL:0000133,7.61e-17,59;CL:0002603,2.09e-14,3;CL:0000221,5.20e-14,72|ontology_enrichment_development_v019=CL:0000339;2.99e-58;15!CL:0000133;1.34e-12;59!CL:0000221;3.09e-08;72|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001778!3.78e-11!3;UBERON:0001775!3.78e-11!3;UBERON:0000488!1.85e-08!4;UBERON:0001708!3.55e-08!4;UBERON:0001704!3.55e-08!4;UBERON:0002200!1.47e-07!11;UBERON:0006876!1.47e-07!11;UBERON:0007625!2.42e-07!11|ontology_enrichment_uberon_v019=UBERON:0000956;1.58e-14;25!UBERON:0000203;1.58e-14;25!UBERON:0002791;4.59e-12;32!UBERON:0001869;4.59e-12;32!UBERON:0003528;2.02e-11;34!UBERON:0002020;2.02e-11;34!UBERON:0001893;2.02e-11;34!UBERON:0000073;1.06e-08;53!UBERON:0002616;1.06e-08;53!UBERON:0002037;7.25e-08;6!UBERON:0002780;1.93e-07;41!UBERON:0001890;1.93e-07;41!UBERON:0000955;2.56e-07;68|ontology_enrichment_uberon_v019_2=UBERON:0000955,9.02e-15,68;UBERON:0006238,9.02e-15,68;UBERON:0000956,1.62e-14,25;UBERON:0000203,1.62e-14,25;UBERON:0001017,1.45e-12,81;UBERON:0000073,2.17e-12,53;UBERON:0002616,2.17e-12,53;UBERON:0001049,8.95e-12,56;UBERON:0005068,8.95e-12,56;UBERON:0006241,8.95e-12,56;UBERON:0007135,8.95e-12,56;UBERON:0002791,1.28e-11,32;UBERON:0001869,1.28e-11,32;UBERON:0001016,2.13e-11,89;UBERON:0003528,5.30e-11,34;UBERON:0002020,5.30e-11,34;UBERON:0001893,5.30e-11,34;UBERON:0002780,2.66e-09,41;UBERON:0001890,2.66e-09,41;UBERON:0003080,2.66e-09,41;UBERON:0006240,2.66e-09,41;UBERON:0003075,2.75e-08,82;UBERON:0007284,2.75e-08,82;UBERON:0002346,6.20e-08,86;UBERON:0002037,7.25e-08,6;UBERON:0006215,7.25e-08,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0.984968464614303,0,1.25381888591235,2.57612388417951,7.11747010378998,6.65375989852455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756278537312543,0.665188192387692,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0.355009592516614,0,0,0,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.723906533337896,0,0.179060963239896,0,0,0,0,0.76228387266739,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784349769176855,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.26107645765299,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1861 | |||
|description=CAGE_peak_at_chr4:169553987..169553999,+ | |||
|id=chr4:169553987..169553999,+ | |||
|ontology_enrichment_celltype=CL:0000128!5.31e-19!7;CL:0000126!5.31e-19!7;CL:0000127!5.31e-19!7;CL:0002453!5.31e-19!7;CL:0002605!4.80e-12!3;CL:0000064!3.78e-11!3;CL:0005012!3.78e-11!3;CL:0000067!3.78e-11!3;CL:0002304!3.78e-11!3;CL:0002319!1.93e-09!25;CL:0000221!1.60e-08!71;CL:0000243!2.41e-07!15;CL:0000125!2.41e-07!15;CL:0000030!2.41e-07!15;CL:0000339!2.41e-07!15;CL:0000133!5.26e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000128;6.94e-140;7!CL:0000126;6.94e-140;7!CL:0000127;6.94e-140;7!CL:0002605;6.36e-118;3!CL:0000243;2.99e-58;15!CL:0000125;2.99e-58;15!CL:0000095;3.17e-52;17!CL:0002319;4.92e-37;25!CL:0002603;2.09e-14;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,6.94e-140,7;CL:0000126,6.94e-140,7;CL:0000127,6.94e-140,7;CL:0002453,6.94e-140,7;CL:0002605,7.78e-118,3;CL:0000243,2.99e-58,15;CL:0000125,2.99e-58,15;CL:0000030,2.99e-58,15;CL:0000339,2.99e-58,15;CL:0000095,3.17e-52,17;CL:0000123,3.17e-52,17;CL:0002319,4.92e-37,25;CL:0000333,1.42e-23,41;CL:0000133,7.61e-17,59;CL:0002603,2.09e-14,3;CL:0000221,5.20e-14,72 | |||
|ontology_enrichment_development_v019=CL:0000339;2.99e-58;15!CL:0000133;1.34e-12;59!CL:0000221;3.09e-08;72 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001778!3.78e-11!3;UBERON:0001775!3.78e-11!3;UBERON:0000488!1.85e-08!4;UBERON:0001708!3.55e-08!4;UBERON:0001704!3.55e-08!4;UBERON:0002200!1.47e-07!11;UBERON:0006876!1.47e-07!11;UBERON:0007625!2.42e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.58e-14;25!UBERON:0000203;1.58e-14;25!UBERON:0002791;4.59e-12;32!UBERON:0001869;4.59e-12;32!UBERON:0003528;2.02e-11;34!UBERON:0002020;2.02e-11;34!UBERON:0001893;2.02e-11;34!UBERON:0000073;1.06e-08;53!UBERON:0002616;1.06e-08;53!UBERON:0002037;7.25e-08;6!UBERON:0002780;1.93e-07;41!UBERON:0001890;1.93e-07;41!UBERON:0000955;2.56e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000955,9.02e-15,68;UBERON:0006238,9.02e-15,68;UBERON:0000956,1.62e-14,25;UBERON:0000203,1.62e-14,25;UBERON:0001017,1.45e-12,81;UBERON:0000073,2.17e-12,53;UBERON:0002616,2.17e-12,53;UBERON:0001049,8.95e-12,56;UBERON:0005068,8.95e-12,56;UBERON:0006241,8.95e-12,56;UBERON:0007135,8.95e-12,56;UBERON:0002791,1.28e-11,32;UBERON:0001869,1.28e-11,32;UBERON:0001016,2.13e-11,89;UBERON:0003528,5.30e-11,34;UBERON:0002020,5.30e-11,34;UBERON:0001893,5.30e-11,34;UBERON:0002780,2.66e-09,41;UBERON:0001890,2.66e-09,41;UBERON:0003080,2.66e-09,41;UBERON:0006240,2.66e-09,41;UBERON:0003075,2.75e-08,82;UBERON:0007284,2.75e-08,82;UBERON:0002346,6.20e-08,86;UBERON:0002037,7.25e-08,6;UBERON:0006215,7.25e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0.984968464614303,0,1.25381888591235,2.57612388417951,7.11747010378998,6.65375989852455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.756278537312543,0.665188192387692,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0.355009592516614,0,0,0,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.723906533337896,0,0.179060963239896,0,0,0,0,0.76228387266739,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784349769176855,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.26107645765299,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0.813792356631477,0,0,0 | |||
|short_description=p@chr4:169553987..169553999,+ | |||
}} |
Revision as of 03:18, 13 September 2013
Short description: | p@chr4:169553987..169553999, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:169553987..169553999, + |
Coexpression cluster: | C1861_astrocytoma_Astrocyte_Ciliary_adrenal_Neural_ductal_temporal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 6.94e-140 | 7 |
macroglial cell | 6.94e-140 | 7 |
astrocyte | 6.94e-140 | 7 |
oligodendrocyte precursor cell | 6.94e-140 | 7 |
astrocyte of the cerebral cortex | 7.78e-118 | 3 |
glial cell (sensu Vertebrata) | 2.99e-58 | 15 |
glial cell | 2.99e-58 | 15 |
glioblast | 2.99e-58 | 15 |
glioblast (sensu Vertebrata) | 2.99e-58 | 15 |
neuron associated cell | 3.17e-52 | 17 |
neuron associated cell (sensu Vertebrata) | 3.17e-52 | 17 |
neural cell | 4.92e-37 | 25 |
migratory neural crest cell | 1.42e-23 | 41 |
neurectodermal cell | 7.61e-17 | 59 |
astrocyte of the cerebellum | 2.09e-14 | 3 |
ectodermal cell | 5.20e-14 | 72 |
Ontology term | p-value | n |
---|---|---|
brain | 9.02e-15 | 68 |
future brain | 9.02e-15 | 68 |
cerebral cortex | 1.62e-14 | 25 |
pallium | 1.62e-14 | 25 |
central nervous system | 1.45e-12 | 81 |
regional part of nervous system | 2.17e-12 | 53 |
regional part of brain | 2.17e-12 | 53 |
neural tube | 8.95e-12 | 56 |
neural rod | 8.95e-12 | 56 |
future spinal cord | 8.95e-12 | 56 |
neural keel | 8.95e-12 | 56 |
regional part of telencephalon | 1.28e-11 | 32 |
cerebral hemisphere | 1.28e-11 | 32 |
nervous system | 2.13e-11 | 89 |
brain grey matter | 5.30e-11 | 34 |
gray matter | 5.30e-11 | 34 |
telencephalon | 5.30e-11 | 34 |
regional part of forebrain | 2.66e-09 | 41 |
forebrain | 2.66e-09 | 41 |
anterior neural tube | 2.66e-09 | 41 |
future forebrain | 2.66e-09 | 41 |
neural plate | 2.75e-08 | 82 |
presumptive neural plate | 2.75e-08 | 82 |
neurectoderm | 6.20e-08 | 86 |
cerebellum | 7.25e-08 | 6 |
rhombic lip | 7.25e-08 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.