FFCP PHASE1:Hg19::chr7:44580861..44580912,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=29881|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7898|TSSclassifier=S|UniProt=B7ZLE6|association_with_transcript=0bp_to_ENST00000546276_5end|coexpression_cluster_id=C794|description=CAGE_peak_1_at_NPC1L1_5end|id=chr7:44580861..44580912,-|ontology_enrichment_celltype=CL:1000507!5.08e-19!12;CL:1000494!5.08e-19!12;CL:1000497!4.81e-17!18;CL:0002518!4.81e-17!18;CL:0000181!8.02e-17!12;CL:0000417!8.02e-17!12;CL:0000668!8.02e-17!12;CL:0000414!8.02e-17!12;CL:0000412!8.02e-17!12;CL:0000182!8.02e-17!12;CL:1000449!1.79e-16!16;CL:0002681!5.27e-11!13;CL:0002584!5.27e-11!13;CL:0000239!2.37e-08!3;CL:1000615!2.37e-08!3;CL:0002306!2.37e-08!3|ontology_enrichment_celltype_v019=CL:1000507;4.84e-34;10!CL:1000494;4.84e-34;10!CL:0000182;1.17e-24;12!CL:1000449;3.39e-22;15!CL:1000497;2.09e-19;17!CL:0002518;2.09e-19;17!CL:0002681;3.42e-17;12!CL:0002584;3.42e-17;12!CL:0000239;4.71e-14;3!CL:1000615;4.71e-14;3!CL:0002306;4.71e-14;3!CL:0000650;1.05e-09;2!CL:1000500;1.05e-09;2!CL:1000618;1.05e-09;2!CL:1001318;1.05e-09;2!CL:0002173;1.05e-09;2|ontology_enrichment_celltype_v019_2=CL:1000507,6.04e-34,10;CL:1000494,6.04e-34,10;CL:0000182,1.17e-24,12;CL:1000449,3.92e-22,15;CL:1000497,2.37e-19,17;CL:0002518,2.37e-19,17;CL:0002681,3.88e-17,12;CL:0002584,3.88e-17,12;CL:0000239,4.60e-14,3;CL:1000615,4.60e-14,3;CL:0002306,4.60e-14,3;CL:0000650,1.26e-09,2;CL:1000500,1.26e-09,2;CL:1000618,1.26e-09,2;CL:1001318,1.26e-09,2;CL:0002173,1.26e-09,2;CL:0000223,2.71e-09,58|ontology_enrichment_development_v019=UBERON:0004161;9.53e-27;11!UBERON:0009497;1.97e-22;13!UBERON:0003104;4.87e-13;31!UBERON:0001041;6.23e-07;30|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005172!6.15e-31!55;UBERON:0005173!6.15e-31!55;UBERON:0002417!4.82e-27!61;UBERON:0000916!4.82e-27!61;UBERON:0009773!5.08e-19!12;UBERON:0001231!5.08e-19!12;UBERON:0004810!5.08e-19!12;UBERON:0006555!2.76e-18!17;UBERON:0005103!2.76e-18!17;UBERON:0000083!2.76e-18!17;UBERON:0009201!2.76e-18!17;UBERON:0004819!2.76e-18!17;UBERON:0006553!2.76e-18!17;UBERON:0003074!2.76e-18!17;UBERON:0003060!2.76e-18!17;UBERON:0002107!6.73e-18!19;UBERON:0006925!6.73e-18!19;UBERON:0008836!6.73e-18!19;UBERON:0000489!1.93e-17!32;UBERON:0005177!1.98e-17!107;UBERON:0000080!4.19e-17!18;UBERON:0002120!4.19e-17!18;UBERON:0004875!4.19e-17!18;UBERON:0005721!4.19e-17!18;UBERON:0005754!4.19e-17!18;UBERON:0007297!4.19e-17!18;UBERON:0003887!1.05e-16!21;UBERON:0002113!1.16e-16!27;UBERON:0003918!1.16e-16!27;UBERON:0005095!1.16e-16!27;UBERON:0007687!1.16e-16!27;UBERON:0004211!1.79e-16!16;UBERON:0001285!1.79e-16!16;UBERON:0007684!1.79e-16!16;UBERON:0003220!1.79e-16!16;UBERON:0004208!1.79e-16!16;UBERON:0009497!3.21e-15!25;UBERON:0000015!3.21e-15!25;UBERON:0002423!3.21e-15!25;UBERON:0006235!3.21e-15!25;UBERON:0004161!3.21e-15!25;UBERON:0004876!4.25e-15!20;UBERON:0008835!5.04e-15!22;UBERON:0003894!5.04e-15!22;UBERON:0005057!2.83e-14!26;UBERON:0009854!3.10e-14!23;UBERON:0009569!9.52e-14!113;UBERON:0007499!7.58e-13!25;UBERON:0000466!2.55e-12!126;UBERON:0009856!3.10e-12!26;UBERON:0006554!1.44e-11!44;UBERON:0001008!3.25e-11!45;UBERON:0001225!5.27e-11!13;UBERON:0008987!5.27e-11!13;UBERON:0000058!5.99e-11!26;UBERON:0000353!3.65e-10!17;UBERON:0002365!8.95e-10!31;UBERON:0002330!8.95e-10!31;UBERON:0003064!1.46e-09!37;UBERON:0003886!8.42e-09!63;UBERON:0001851!1.17e-08!16;UBERON:0003929!1.38e-08!54;UBERON:0004921!1.59e-08!129;UBERON:0004185!1.59e-08!129;UBERON:0006853!2.37e-08!3;UBERON:0007685!2.37e-08!3;UBERON:0004134!2.37e-08!3;UBERON:0002368!2.52e-08!35;UBERON:0003914!1.21e-07!118;UBERON:0003103!1.32e-07!69;UBERON:0005409!1.62e-07!35;UBERON:0002553!1.79e-07!70;UBERON:0000949!6.01e-07!45|ontology_enrichment_uberon_v019=UBERON:0004211;4.84e-34;10!UBERON:0009773;4.84e-34;10!UBERON:0001231;4.84e-34;10!UBERON:0004810;4.84e-34;10!UBERON:0002107;2.02e-28;19!UBERON:0006925;2.02e-28;19!UBERON:0002423;4.21e-25;25!UBERON:0005172;1.23e-23;52!UBERON:0005173;1.23e-23;52!UBERON:0006555;3.39e-22;15!UBERON:0004819;3.39e-22;15!UBERON:0001285;3.39e-22;15!UBERON:0007684;3.39e-22;15!UBERON:0001225;3.42e-17;12!UBERON:0008987;3.42e-17;12!UBERON:0002417;1.22e-16;58!UBERON:0000916;1.22e-16;58!UBERON:0002113;2.13e-16;24!UBERON:0011143;2.13e-16;24!UBERON:0002365;3.01e-16;31!UBERON:0002330;3.01e-16;31!UBERON:0000160;1.77e-15;17!UBERON:0005409;6.18e-15;22!UBERON:0002368;2.91e-14;33!UBERON:0006853;4.71e-14;3!UBERON:0007685;4.71e-14;3!UBERON:0004134;4.71e-14;3!UBERON:0001851;1.41e-13;15!UBERON:0000353;1.41e-13;15!UBERON:0000489;2.94e-13;29!UBERON:0006554;9.34e-13;30!UBERON:0001008;9.34e-13;30!UBERON:0000949;1.69e-10;43!UBERON:0001007;4.26e-10;81!UBERON:0003567;1.05e-09;2!UBERON:0003838;1.05e-09;2!UBERON:0003586;1.05e-09;2!UBERON:0005169;1.05e-09;2!UBERON:0002321;1.05e-09;2!UBERON:0005215;1.05e-09;2!UBERON:0002303;1.05e-09;2!UBERON:0002319;1.05e-09;2!UBERON:0002108;2.81e-09;4!UBERON:0004921;2.86e-09;33!UBERON:0005177;1.06e-07;99!UBE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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=29881 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7898 | |||
|TSSclassifier=S | |||
|UniProt=B7ZLE6 | |||
|association_with_transcript=0bp_to_ENST00000546276_5end | |||
|coexpression_cluster_id=C794 | |||
|description=CAGE_peak_1_at_NPC1L1_5end | |||
|id=chr7:44580861..44580912,- | |||
|ontology_enrichment_celltype=CL:1000507!5.08e-19!12;CL:1000494!5.08e-19!12;CL:1000497!4.81e-17!18;CL:0002518!4.81e-17!18;CL:0000181!8.02e-17!12;CL:0000417!8.02e-17!12;CL:0000668!8.02e-17!12;CL:0000414!8.02e-17!12;CL:0000412!8.02e-17!12;CL:0000182!8.02e-17!12;CL:1000449!1.79e-16!16;CL:0002681!5.27e-11!13;CL:0002584!5.27e-11!13;CL:0000239!2.37e-08!3;CL:1000615!2.37e-08!3;CL:0002306!2.37e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:1000507;4.84e-34;10!CL:1000494;4.84e-34;10!CL:0000182;1.17e-24;12!CL:1000449;3.39e-22;15!CL:1000497;2.09e-19;17!CL:0002518;2.09e-19;17!CL:0002681;3.42e-17;12!CL:0002584;3.42e-17;12!CL:0000239;4.71e-14;3!CL:1000615;4.71e-14;3!CL:0002306;4.71e-14;3!CL:0000650;1.05e-09;2!CL:1000500;1.05e-09;2!CL:1000618;1.05e-09;2!CL:1001318;1.05e-09;2!CL:0002173;1.05e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,6.04e-34,10;CL:1000494,6.04e-34,10;CL:0000182,1.17e-24,12;CL:1000449,3.92e-22,15;CL:1000497,2.37e-19,17;CL:0002518,2.37e-19,17;CL:0002681,3.88e-17,12;CL:0002584,3.88e-17,12;CL:0000239,4.60e-14,3;CL:1000615,4.60e-14,3;CL:0002306,4.60e-14,3;CL:0000650,1.26e-09,2;CL:1000500,1.26e-09,2;CL:1000618,1.26e-09,2;CL:1001318,1.26e-09,2;CL:0002173,1.26e-09,2;CL:0000223,2.71e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;9.53e-27;11!UBERON:0009497;1.97e-22;13!UBERON:0003104;4.87e-13;31!UBERON:0001041;6.23e-07;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p1@NPC1L1 | |||
}} |
Revision as of 01:20, 14 September 2013
Short description: | p1@NPC1L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_NPC1L1_5end |
Coexpression cluster: | C794_small_signet_adenocarcinoma_colon_Hepatocyte_gall_liver |
Association with transcript: | 0bp_to_ENST00000546276_5end |
EntrezGene: | NPC1L1 |
HGNC: | 7898 |
UniProt: | B7ZLE6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 6.04e-34 | 10 |
nephron tubule epithelial cell | 6.04e-34 | 10 |
hepatocyte | 1.17e-24 | 12 |
epithelial cell of nephron | 3.92e-22 | 15 |
kidney cell | 2.37e-19 | 17 |
kidney epithelial cell | 2.37e-19 | 17 |
kidney cortical cell | 3.88e-17 | 12 |
renal cortical epithelial cell | 3.88e-17 | 12 |
brush border epithelial cell | 4.60e-14 | 3 |
kidney cortex tubule cell | 4.60e-14 | 3 |
epithelial cell of proximal tubule | 4.60e-14 | 3 |
mesangial cell | 1.26e-09 | 2 |
kidney interstitial cell | 1.26e-09 | 2 |
juxtaglomerular complex cell | 1.26e-09 | 2 |
renal interstitial pericyte | 1.26e-09 | 2 |
extraglomerular mesangial cell | 1.26e-09 | 2 |
endodermal cell | 2.71e-09 | 58 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.