FFCP PHASE1:Hg19::chr19:40030784..40030808,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=163126 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28292 | |||
|TSSclassifier=strong | |||
|UniProt=F5GYE7,Q8N6I1 | |||
|association_with_transcript=29bp_to_ENST00000539700,NM_153232,uc002oma.2_5end | |||
|description=CAGE_peak_1_at_EID2_5end | |||
|id=chr19:40030784..40030808,- | |||
|ontology_enrichment_celltype=CL:0000055!2.85e-08!180;CL:0000057!4.80e-08!75 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.26e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!3.95e-13!86;UBERON:0001017!8.05e-12!82;UBERON:0000955!1.06e-11!69;UBERON:0006238!1.06e-11!69;UBERON:0003075!4.37e-11!86;UBERON:0007284!4.37e-11!86;UBERON:0003056!5.06e-11!61;UBERON:0000073!7.22e-11!94;UBERON:0001016!7.22e-11!94;UBERON:0002616!3.86e-10!59;UBERON:0000033!1.09e-09!123;UBERON:0002346!1.16e-09!90;UBERON:0002780!7.79e-09!41;UBERON:0001890!7.79e-09!41;UBERON:0006240!7.79e-09!41;UBERON:0000956!8.63e-09!25;UBERON:0000203!8.63e-09!25;UBERON:0001049!2.56e-08!57;UBERON:0005068!2.56e-08!57;UBERON:0006241!2.56e-08!57;UBERON:0007135!2.56e-08!57;UBERON:0003080!2.66e-08!42;UBERON:0001869!3.16e-08!32;UBERON:0000153!4.75e-08!129;UBERON:0007811!4.75e-08!129;UBERON:0001893!6.00e-08!34;UBERON:0002619!6.91e-08!22;UBERON:0000119!8.89e-08!312;UBERON:0001950!9.37e-08!20;UBERON:0000475!1.10e-07!365;UBERON:0002791!1.83e-07!33;UBERON:0002020!3.33e-07!34;UBERON:0003528!3.33e-07!34;UBERON:0000483!3.95e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;7.46e-09;25!UBERON:0000203;7.46e-09;25!UBERON:0002619;6.00e-08;22!UBERON:0001950;7.67e-08;20!UBERON:0001869;1.49e-07;32!UBERON:0001893;3.30e-07;34!UBERON:0002791;4.80e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.87e-12,81;UBERON:0000955,3.38e-12,68;UBERON:0006238,3.38e-12,68;UBERON:0003056,5.13e-11,61;UBERON:0003075,1.23e-10,82;UBERON:0007284,1.23e-10,82;UBERON:0001016,4.77e-10,89;UBERON:0000073,1.34e-09,53;UBERON:0002616,1.34e-09,53;UBERON:0010314,2.52e-09,132;UBERON:0002346,3.23e-09,86;UBERON:0002780,7.79e-09,41;UBERON:0001890,7.79e-09,41;UBERON:0003080,7.79e-09,41;UBERON:0006240,7.79e-09,41;UBERON:0000956,8.63e-09,25;UBERON:0000203,8.63e-09,25;UBERON:0001049,9.30e-09,56;UBERON:0005068,9.30e-09,56;UBERON:0006241,9.30e-09,56;UBERON:0007135,9.30e-09,56;UBERON:0001869,3.16e-08,32;UBERON:0001893,6.00e-08,34;UBERON:0002619,6.91e-08,22;UBERON:0001950,9.36e-08,20;UBERON:0002791,1.18e-07,32;UBERON:0000119,1.52e-07,309;UBERON:0003528,3.33e-07,34;UBERON:0002020,3.33e-07,34;UBERON:0010371,4.63e-07,104;UBERON:0000483,6.58e-07,306 | |||
|phase1_expression=5.99538651592837,10.2768251467672,8.45726424575827,14.0102617694383,11.6209884551095,16.574431957907,7.59899634504932,8.84407822797563,9.92505387159386,5.6518805395347,4.88460817580699,3.49506195408276,5.01157258634062,9.15871011904345,10.2733186475654,13.4465029290355,15.0673632005994,8.76372108464848,12.1983199697627,11.8196215753716,9.18003110599138,8.77673220138646,11.1632034981112,11.4974517061223,8.66244213204139,3.132949635666,4.51553241974702,4.64393609750708,7.47392126012918,5.37361157336098,5.10893206943051,1.83884244895785,2.10844143144775,3.32778609150109,5.88750724410292,4.40724620711007,6.45920966536664,1.66198622559563,2.20598892217156,2.82114131930607,8.2848725468772,10.3645973126073,5.92423805558629,7.56070841653736,3.77875943688809,5.33684934613196,2.78914844286822,2.05583944010913,3.09706370895104,6.04154023876516,7.42866048934392,5.20260905754887,2.06847408441971,1.29096936716765,0,6.02375486536335,3.0019676506363,3.37085226667627,1.53041946185451,3.85114832491312,1.91801137739712,11.8746468067218,7.97854630486527,8.52449501065388,0.290209238628584,1.70215567407342,3.73693349397345,5.27622197039161,4.17186334736161,7.16723187526885,3.63239701580021,1.10483290796269,1.89877432464531,8.02770087985379,6.80333759888139,8.59600446584341,8.19999007369414,7.50884464207532,8.19700492155109,10.8304842621674,9.15016715115815,10.0465284570549,10.5597746676794,10.9227722252426,16.9006758234075,4.69403244823158,13.6134635592244,10.9202963591352,5.94940385506376,8.58648379081828,4.55370375287559,0.587237189370939,3.82273228125229,5.28685314316103,3.92355994087075,8.95505888235262,1.37696839079683,3.53709686474248,3.08402248499264,6.01871383406441,4.23698946623668,6.15482147455153,3.89653456815823,6.35039604245489,5.00830042707223,7.08908462667588,4.33286182024025,4.61128751012431,5.9827299877544,5.09757504271396,6.35605040907451,6.95527405764126,4.15202376853769,3.74557159325598,5.22677619024884,5.77877647757588,3.44898444241729,6.8725489096526,0.759059076058509,9.2383970153988,14.3238359848412,19.0090408889675,7.52875595388864,9.08704939196371,12.4930726552346,10.4181990899367,16.4225599384209,3.22570789159572,1.60464117470104,3.04131248153878,7.31420598941885,8.04841031644363,8.18320395798594,7.59022220007589,10.0267582127178,11.8774145547875,1.5905718941022,5.83961844363163,9.35894689924272,9.75609348835281,8.7834785693126,7.20384915237419,3.64295288292542,5.93255108455087,5.51730569212962,4.17911369518241,4.91944453919801,1.43094374583205,2.85997455390064,4.08603251462521,5.56534740626774,4.30117297553062,6.2485290289367,9.04492707078415,8.80948816040802,15.4066103486438,6.06085402956751,10.8535038851118,10.6729878806013,8.36801531911676,11.6820501961653,6.0821768457481,7.80998584154142,10.6622293300302,13.7724131139899,9.64437065468061,9.6547630229253,8.44586103624917,6.13266549863533,11.3911879148175,6.04565754970344,1.31780417436063,0,6.54141078213801,5.4666914686485,12.663051166458,7.41491412554025,6.02356903572509,4.965357350777,8.97084160227691,5.33744978648525,13.813382711361,8.09148692039392,9.56445771694785,8.66348086501331,13.7735259156888,14.98057403648,7.0296429550139,10.3012825354006,4.56377457235559,10.7603049997297,5.98915943083201,5.17993421978021,8.56749920883716,6.94124182266637,9.5810767503179,6.50952421407322,7.12801714369232,8.65434252474949,11.8320977051943,5.74894513452991,9.09015015351958,8.00758527180571,7.48073111807294,3.95079858792754,10.1140972613676,9.16452159330241,9.64173556860179,6.63741652048789,8.96941033037983,8.47727604638247,7.80236849819446,9.48083268993638,11.5938243020533,10.6086608109006,3.37552664482532,8.67189345934668,8.58274832429989,9.02089006694534,8.40559495457822,10.6502877754984,9.77295352808111,9.32583257707682,6.3776081543888,4.63668405004419,4.58887352622406,7.68434348616451,10.6023814657188,8.59835177234436,9.01851178633723,8.32658807889574,9.12443397689575,3.12899064659632,12.2215778256648,2.76269842704961,10.2160944167035,9.38443326170461,6.03364680203204,9.10357326421749,5.06123162755312,6.39705041847885,6.972142210957,5.93176547777742,5.52808363456674,4.31687223275761,6.54070166808864,11.8104872739944,12.6217596423101,11.5240723172792,11.7606969108434,15.2106041786197,7.86261773342101,5.31710916013264,7.50487269004906,6.02643348861256,8.23525489432923,6.36551655370028,1.1240175325762,8.74602059981188,6.01824893530442,13.032332212413,11.4392826380754,8.6598805215164,13.4479269771089,9.27528684462991,10.2500177910362,10.648666789262,9.13219930726072,1.58040879591855,3.43394464837949,9.84868024349589,3.27605971194933,4.7561971932393,11.2480600784132,5.37542810236351,5.81277898693785,4.20925056703387,4.06887513919547,4.60059214998253,2.95597942737566,7.39606845711099,9.74442143041629,9.80015683235338,5.6809095041871,8.63571362373499,4.20187268114105,7.03304683260282,8.55362230113526,9.25447434329912,7.80891950394185,10.861404439962,15.3619585553144,10.899001720832,10.6340514440378,3.49033632546,7.15312891703765,7.607724773004,10.6375246633948,7.28052058379563,6.43018435655355,2.83698264046557,9.59119844457958,10.0084595560703,10.3098105024374,7.40916303102692,12.7037111874557,9.24019066730619,9.50342247520115,7.83742380354924,6.10073421020206,9.69738014465953,3.64871341923571,8.03611346291402,2.10833939483032,9.10574450868014,10.3375742250703,2.85273810081437,4.63300181336253,7.3971476118138,8.0577433457953,6.27676806363753,4.53170748464433,5.82194452120697,6.16046574142792,9.40150109623115,6.50699269288109,13.1459098172208,17.5892078601066,9.56908127479745,0.749007023947182,0,0.828831026872071,9.20186187893549,16.5056271949693,12.2069260664881,7.69492187663986,7.13715955188647,6.93890626149313,5.85707074963566,3.91229929646035,4.5481500811197,8.27784570340039,8.63493278096067,7.92787424729324,9.20966313361678,13.7060810223918,12.3531632571908,3.51505644408909,4.74571241800957,5.87001567918944,6.97193414326397,6.65741758041988,5.14063498660456,6.69891081110698,7.82656063769118,9.82310330515758,6.53509661204075,6.14048698880044,8.84696566289841,10.3892646511494,6.9394362211195,11.186388694727,7.63782550928425,7.78881643775432,7.32125384297743,5.92211302998949,7.21823293091825,5.0644543914743,8.61108361234551,6.55528204824181,9.96545553691623,9.02399225814824,6.54630365387526,3.92174884588428,11.6911379722609,8.12747542475143,19.3346752920524,12.5869341904622,10.795795805107,13.880452742126,12.4635361270172,3.51182841698397,7.39141191830611,8.31076008928724,9.40273969833149,5.7007567927943,3.92153176537351,15.8999077572161,11.8085272451894,13.991270970565,5.77029665227245,6.9592793261941,8.82851649150292,3.44559322797703,2.60024098414608,4.82051789532479,9.47373039262795,9.24291702687866,6.60065801322357,8.95937721149449,6.55263493696469,8.1209348591968,8.26698285936179,7.47869099432594,5.78497203763423,6.72665235777872,3.95599408733211,4.6532579193553,8.36721988735114,7.55549632393536,6.2733354314454,2.7723022215848,2.66153015158511,5.21959795245044,5.00375391580584,4.43687148900173,7.07100901783368,9.17500331684305,7.81583795087682,12.7948895655667,12.8381696410176,4.45484547096312,1.56989728039846,11.1520923701655,8.23611089208164,9.42499218765492,4.85237955775958,6.34041284692033,6.7401352998237,8.77740730361263,8.04254515783239,5.28250733783777,10.7834930012309,10.4640019645747,6.78048699721457,2.75682671773062,3.98063385144732,6.13831239355268,8.10285747973363,15.0855792970726,4.05820753925408,7.12594045629425,4.22543403798362,10.3256173586917,9.92315314232524,3.5667105148125,2.48332744849418,9.49984358839489,7.24448764511784,5.31262443272001,5.94889024416471,2.21310859268678,0.670302275535787,1.08890984861323,4.23647103495506,6.02707521739722,3.36942951335251,4.87773168890343,6.66197860600182,2.53723804616085,6.88173486428138,4.5571774973933,6.19402616190251,8.22724546172388,7.13320642311989,7.56044012133361,5.55187623405989,11.964295966277,7.69983884210687,2.94048259177238,6.68891430452587,4.03953796334046,3.55709216742071,4.94221445459349,8.18275422874548,8.80924702608887,9.73698480529861,4.22008522356922,7.30072663094993,4.10822422259746,4.85707676896372,5.01268954180134,5.41733688965131,7.70822760497758,6.65939033730457,2.12923118845163,6.87010689511529,6.14481528616916,6.71028323677248,4.17122854279771,5.47086667125713,3.89768643453339,4.92349595790849,5.40911356951966,4.66300755196948,5.63948020351398,6.36277837387947,8.20445803922606,8.00979443546789,8.13536705225592,8.52408440419239,2.62618933211459,2.96964680832639,4.60741053148848,10.9356241254293,7.17414023693615,7.23506582648888,5.93293947216335,5.91151142758382,4.18420775327246,4.14425873296722,4.28285671352269,15.4425710578254,1.96935688737711,5.90975216557434,2.51631383212515,2.50629644545853,6.65044081294933,4.63624006493588,0,4.44547960578548,11.6319929531426,14.2862871169251,15.9691038400955,1.82299432759663,2.79871999987826,4.34999745260876,3.18621655199399,4.57656570526979,6.14607972596635,11.3765313169683,8.45653378811438,7.63949977706486,5.31444831488303,7.83876851065152,6.10326945268333,10.0627126537414,13.8907380908167,10.7498844605447,8.71507708151921,7.66830593532318,7.07942378234933,13.2172784782521,1.38338342632836,0.0897576444097721,7.82261077838458,4.14701507651495,6.96141709854154,3.19820865611181,11.241262801531,5.80826948661592,3.65665700180344,6.09108283666388,5.48975096089671,4.53118284834775,5.69261198172555,5.08597052737212,7.17393419395292,0.979396848954886,4.38194521445217,8.22276831019946,8.95735737970654,8.04963836980386,3.66618086960175,5.33738031625119,8.27878390941569,7.93606816241461,6.60531103210635,4.01288823649394,7.49646226321085,4.01400536274465,2.93496928398135,5.82672910881823,4.73501283419269,2.41981432097328,14.385419796633,7.83513587393251,4.96067284067825,10.3688191397247,12.6284235814365,14.5636460585219,16.0105788387685,4.77889719091835,10.2459436570725,8.04313103476204,5.90103110339445,2.05784034570193,5.31061160140456,4.36816670605075,11.3510781431267,10.1594147853539,10.4517723433245,7.55462204889525,3.78257164304836,10.59073520298,8.81324889044077,7.2632220062778,4.57043606916876,14.118307498161,6.4531956302485,7.8555643846503,7.25740182113799,7.79257477370308,4.03453168031497,9.62107407793692,7.89336990165037,13.9733154048505,5.3428590293136,2.59263438078475,9.6491986312266,9.93727039967165,7.9558609756331,3.46740707881823,6.00420288709789,5.75002591346371,2.55493176133945,5.58695073845944,6.30929650270355,3.90995361781156,6.18733144831546,6.46085722119133,5.19165401297377,5.15071257763885,9.15002975511677,6.44961335872572,3.60299883542404,1.16495949527454,8.58736687148738,8.73608098840364,8.15582880635637,14.7641222272123,4.14899327122344,8.74752658790234,8.30840777280611,5.30485389934563,5.36403802729212,7.47792608452533,8.32403398740552,8.51182150013745,14.0331475880037,2.34804281319486,6.61967941313265,6.39945975246977,9.60963062326599,9.14365430597508,4.79787993298613,0.714695326373367,7.28301167401975,5.085370753095,6.51599522104455,15.5559868416228,9.14444608306346,16.7622268187482,6.23903157694976,6.98590889320229,9.06496732161006,6.15519381447946,3.97520666736664,5.81773303626977,7.00832789236257,7.86999454267915,0,6.30045734149399,6.13096789888697,2.48543433208317,5.45782623993146,6.91640711642805,7.06397070609196,8.29843635101236,4.35214242695579,9.02483618481721,7.35229384232308,9.18043365987452,4.71162288750703,10.6328181596038,11.9585739603924,7.38626491168349,4.0138643698305,6.98853024682169,8.69349641179368,7.60917492149269,5.6241183582948,5.76266646658262,11.4186133417987,5.41111385305795,12.1767075509789,8.84018274526033,9.85081699053369,6.54397267572229,4.99325275352352,9.65955326902955,7.79860495432983,4.44905610798268,5.94984177832001,7.41031526439871,7.46098562797346,9.90629504930547,7.80554159102142,4.94783423379965,8.84998854194679,7.87941794897625,6.64604286394987,7.82617592717601,9.16571414883032,4.18885733385675,6.91680246447925,8.91058430092541,9.12989734861152,3.71227007902795,7.16572599657509,11.6008051752315,8.24149692438703,5.72474130902062,5.04739592914604,6.16383457303371,13.0809370738705,8.09082305092156,8.38811924395408,9.26089897295336,9.29999477124577,12.8943965578671,5.24962460173653,8.77136198314828,5.47736352432231,7.71656153083659,4.89933077893911,5.89355492752277,10.0174799102048,3.03859956177382,9.67809053062115,5.65094895634227,4.51740457065435,5.23409261618701,9.17307576769955,9.83091635014877,1.05656061679314,2.99981093782395,9.06879702400198,3.96094453219876,10.215287164203,7.91655586082915,4.89578277018056,3.11038630016486,6.77840167909354,10.3511818940815,6.76243549980355,9.50123852270521,4.75251083871271,6.1646726829488,4.46168751332408,1.67593475391973,3.4980478571876,4.10081074006517,31.2222591831333,9.16957453595778,12.5560645714812,10.8547390413017,15.5866233958143,8.46059453002902,12.3069818544453,13.1077282035293,13.969764997772,12.4336247136525,4.28308260777463,5.10368136205333,2.94924308369351,4.76914356156365,3.23471865220947,6.48349562294184,4.1421595563606,4.37615688655804,5.18951265609875,4.84092164888448,5.47059807863165,1.04762677792569,5.89578903036348,4.87925084516249,14.3179679390997,9.37293718336617,10.3343398250592,12.3660829878118,13.6743702254555,3.83780436800028,4.46590060550365,2.11045493231545,3.19406069098988,6.96412386641773,11.43364655544,14.5671745016792,9.3341498454032,5.05603509927041,4.03318956445227,5.14464028312255,15.4291293857408,12.8256908447556,11.228414883977,3.33694205676207,5.25903722098444,7.22731713613609,0.840816489941367,4.56579360254748,6.90968291899588,3.8220135030964,7.79094331525554,8.37472142183451,7.67193407429627,7.12818916440576,5.61197955311177,6.00926876072807,8.8773608088854,3.45629830907046,4.73250094702305,2.721636016803,4.00503002368041,4.65725755210022,0.68732060563215,5.58371494195776,6.68877257284203,5.25720529449624,3.23895770930302,1.5849330247695,7.76914604625474,7.08373367308104,3.4794432940146,2.4285549652957,31.3478881039222,14.1255050364571,17.6001734350801,3.3883824611688,4.61750170330802,7.69910502190035,6.32828096485146,5.24542945209498,16.9314226690148,5.88355972209373,3.53514820652439,2.74831853960923,5.64388160621463,8.453114551668,2.71883383500507,6.57887425858975,5.60783625370121,2.69841120997308,2.49975514047921,3.88184358887261,14.2027219039828,0,3.21110498383179,7.45365832387547,10.4129231047502,12.0344937637919,14.3995727812325,5.290268405154,9.67187047233553,13.4030932303111,12.9787968637137,4.66815771889792,5.24474745425739,7.34851305866334,2.44773191380756,2.93939145792117,4.77853477581194,3.25919801080088,7.27475502895098,8.30688803484153,8.29169439458779,7.34374270619456,2.98527574661373,5.95161078659351,4.06910131966838,2.85543685760946,5.71872499161128,8.5287192092741,5.65928129083014,3.70118471424834,6.16019941953506,3.56965880977314,5.66605422602143,3.32660356546013,2.68630786416216,5.33636729388577,5.7921684686082,4.7607357116491,0,8.67914253698352,6.51033885305182,7.32332451604064,4.6292972525936,2.8851164307291 | |||
|short_description=p1@EID2 | |||
}} |
Revision as of 23:16, 20 January 2014
Short description: | p1@EID2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EID2_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_ENST00000539700, NM_153232, uc002oma.2_5end |
EntrezGene: | EID2 |
HGNC: | 28292 |
UniProt: | F5GYE7Q8N6I1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.26e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.87e-12 | 81 |
brain | 3.38e-12 | 68 |
future brain | 3.38e-12 | 68 |
pre-chordal neural plate | 5.13e-11 | 61 |
neural plate | 1.23e-10 | 82 |
presumptive neural plate | 1.23e-10 | 82 |
nervous system | 4.77e-10 | 89 |
regional part of nervous system | 1.34e-09 | 53 |
regional part of brain | 1.34e-09 | 53 |
structure with developmental contribution from neural crest | 2.52e-09 | 132 |
neurectoderm | 3.23e-09 | 86 |
regional part of forebrain | 7.79e-09 | 41 |
forebrain | 7.79e-09 | 41 |
anterior neural tube | 7.79e-09 | 41 |
future forebrain | 7.79e-09 | 41 |
cerebral cortex | 8.63e-09 | 25 |
pallium | 8.63e-09 | 25 |
neural tube | 9.30e-09 | 56 |
neural rod | 9.30e-09 | 56 |
future spinal cord | 9.30e-09 | 56 |
neural keel | 9.30e-09 | 56 |
cerebral hemisphere | 3.16e-08 | 32 |
telencephalon | 6.00e-08 | 34 |
regional part of cerebral cortex | 6.91e-08 | 22 |
neocortex | 9.36e-08 | 20 |
regional part of telencephalon | 1.18e-07 | 32 |
cell layer | 1.52e-07 | 309 |
brain grey matter | 3.33e-07 | 34 |
gray matter | 3.33e-07 | 34 |
ecto-epithelium | 4.63e-07 | 104 |
epithelium | 6.58e-07 | 306 |