FFCP PHASE1:Mm9::chr11:94852688..94852702,+: Difference between revisions
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{{FFCP|EntrezGene=217124|HGNC=|UniProt=Q6R891|association_with_transcript=162bp_to_NM_172261,uc007kzr.2_5end|description=CAGE_peak_5_at_Ppp1r9b_5end|id=chr11:94852688..94852702,+|ontology_enrichment_celltype=CL:0000117!1.23e-08!23;CL:0000337!1.23e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.20e-11,23;CL:0000337,2.20e-11,23;CL:0000221,3.95e-08,44;CL:0000133,3.95e-08,44;CL:0002319,9.30e-08,43;CL:0000540,1.25e-07,33;CL:0000047,1.25e-07,33;CL:0000031,1.25e-07,33;CL:0000404,1.25e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000955!1.48e-15!50;UBERON:0006238!1.48e-15!50;UBERON:0001049!1.89e-15!52;UBERON:0005068!1.89e-15!52;UBERON:0006241!1.89e-15!52;UBERON:0007135!1.89e-15!52;UBERON:0001017!3.39e-15!73;UBERON:0005743!3.39e-15!73;UBERON:0002616!3.82e-15!49;UBERON:0000073!3.16e-14!75;UBERON:0001016!3.16e-14!75;UBERON:0000033!8.01e-14!63;UBERON:0002020!2.51e-13!34;UBERON:0003080!4.24e-13!40;UBERON:0002780!1.41e-12!39;UBERON:0001890!1.41e-12!39;UBERON:0006240!1.41e-12!39;UBERON:0002346!1.42e-12!71;UBERON:0003075!1.42e-12!71;UBERON:0007284!1.42e-12!71;UBERON:0002791!3.54e-12!29;UBERON:0003528!3.54e-12!29;UBERON:0001893!3.54e-12!29;UBERON:0004121!1.06e-11!102;UBERON:0000924!1.06e-11!102;UBERON:0006601!1.06e-11!102;UBERON:0007811!1.09e-11!86;UBERON:0003056!5.39e-11!49;UBERON:0000153!8.03e-09!94;UBERON:0000956!3.21e-08!21;UBERON:0001869!3.21e-08!21;UBERON:0000203!3.21e-08!21;UBERON:0002021!7.91e-07!10;UBERON:0000411!7.91e-07!10;UBERON:0001950!7.91e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.09e-23,73;UBERON:0000073,3.71e-22,54;UBERON:0001016,1.04e-21,75;UBERON:0001049,8.88e-21,52;UBERON:0005068,8.88e-21,52;UBERON:0006241,8.88e-21,52;UBERON:0007135,8.88e-21,52;UBERON:0000955,5.10e-19,47;UBERON:0006238,5.10e-19,47;UBERON:0002616,1.77e-18,46;UBERON:0002020,1.21e-17,34;UBERON:0003080,3.12e-17,40;UBERON:0004121,1.23e-16,95;UBERON:0000924,1.23e-16,95;UBERON:0006601,1.23e-16,95;UBERON:0002780,1.56e-16,39;UBERON:0001890,1.56e-16,39;UBERON:0006240,1.56e-16,39;UBERON:0002346,2.25e-16,64;UBERON:0003075,2.25e-16,64;UBERON:0007284,2.25e-16,64;UBERON:0003528,2.45e-16,29;UBERON:0002791,2.45e-16,29;UBERON:0001893,2.45e-16,29;UBERON:0010371,1.57e-15,73;UBERON:0003056,1.07e-13,49;UBERON:0000956,4.75e-11,21;UBERON:0001869,4.75e-11,21;UBERON:0000203,4.75e-11,21;UBERON:0010314,6.01e-11,92;UBERON:0002619,1.21e-08,17;UBERON:0002021,1.53e-08,10;UBERON:0000411,1.53e-08,10;UBERON:0001950,1.53e-08,10|phase1_expression=2.5623815536767,0,0,0.60492842261366,0.500895729946347,0.671517087647559,0.467225281191051,1.54947988129892,0.703943610758334,0.234064526321993,0.34243593645101,0,0.684802919724823,1.22388563386596,1.33243904726265,2.22722794128809,1.39912375625629,0.788655413395594,0.411343300817216,0.84877930359606,2.04103896362567,1.58865521921416,0.261199789138935,1.27993938234725,1.60586496747019,0,0.86152399231815,0.215471232685889,0.950117097281869,0.756090389279792,0.886922042621219,1.27006134691926,0,0,0,0.664938581433969,0.408338712524738,3.34825304589526,2.3440060335714,3.66466620781659,1.76469446409304,4.78131839470912,2.91306211818692,1.38486499773135,0.709638518536602,0.367093504323363,0,1.74420125104357,0.439372365468944,1.1665793944457,1.1198913730029,2.87505128729943,0.671130424230945,2.17608642603403,2.68875039313971,0.514518872071894,0.573066879877513,0.515672092277442,1.82084814773638,2.64495489636016,1.90149421051854,0,1.77858959222228,4.94944844504769,5.93319817540185,3.5524005747305,2.69640099466564,1.92109152660777,2.48855069540346,3.51015439662396,2.10324961351382,2.85650984403804,2.20868540951614,1.95985278743926,3.1629005436018,0,3.30347642998166,3.70293280447044,3.22573719838111,1.58263545276233,4.29991924931325,2.6045668527838,3.62937898701795,6.19038871034848,4.27835093775068,4.12480019663135,0.569486723196412,1.67759501242771,0.151452386666368,0.604572480854284,0.579728977403356,0,0,0,0,0,0.983110940922263,0.852151612890289,0.779358013808606,0.35333957451034,1.97180787687353,0,0,7.11066703153331,0.649473123033642,1.26679932737549,1.01104889002957,0.5709193985953,0.258937883647172,0.593768556259299,1.56136794089522,0.608930956624282,1.38369298353635,1.3565037649736,0.940709657085638,1.50799909595611,0.247194967734374,0.289198713839823,1.76922110389975,0.323533699894818,0.662524555381181,0,1.86391761218122,1.17112318804619,1.67557365450764,0.510914110417183,0.838705871541442,0,1.52484272487678,3.59497534571574,5.94750783664214,2.26177833803156,5.38855392596057,5.8814555185976,3.74018480207208,4.70499662896497,0.916554274652847,0.497627882440372,0.505445516867349,0.420883711772948,0.910843100738926,0,0.360124259610698,0.753524089178575,1.15662048557257,0.768682321709099,1.21812241927647,1.55222022443409,0.215567992932842,0,0.527853372491847,0.219195732427575,0.834141747676794,0,0.61734640922383,1.39323986772945,0.702213187313235,0.772043721344145,1.42081749697796,1.03562886267751,0.938104239924385,0.900310307305074,0.23674473558521,0.1967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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:217124 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6R891 | |||
|association_with_transcript=162bp_to_NM_172261,uc007kzr.2_5end | |||
|cluster_id=chr11:94852688..94852702,+ | |||
|description=CAGE_peak_5_at_Ppp1r9b_5end | |||
|id=chr11:94852688..94852702,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.23e-08!23;CL:0000337!1.23e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.20e-11,23;CL:0000337,2.20e-11,23;CL:0000221,3.95e-08,44;CL:0000133,3.95e-08,44;CL:0002319,9.30e-08,43;CL:0000540,1.25e-07,33;CL:0000047,1.25e-07,33;CL:0000031,1.25e-07,33;CL:0000404,1.25e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!1.48e-15!50;UBERON:0006238!1.48e-15!50;UBERON:0001049!1.89e-15!52;UBERON:0005068!1.89e-15!52;UBERON:0006241!1.89e-15!52;UBERON:0007135!1.89e-15!52;UBERON:0001017!3.39e-15!73;UBERON:0005743!3.39e-15!73;UBERON:0002616!3.82e-15!49;UBERON:0000073!3.16e-14!75;UBERON:0001016!3.16e-14!75;UBERON:0000033!8.01e-14!63;UBERON:0002020!2.51e-13!34;UBERON:0003080!4.24e-13!40;UBERON:0002780!1.41e-12!39;UBERON:0001890!1.41e-12!39;UBERON:0006240!1.41e-12!39;UBERON:0002346!1.42e-12!71;UBERON:0003075!1.42e-12!71;UBERON:0007284!1.42e-12!71;UBERON:0002791!3.54e-12!29;UBERON:0003528!3.54e-12!29;UBERON:0001893!3.54e-12!29;UBERON:0004121!1.06e-11!102;UBERON:0000924!1.06e-11!102;UBERON:0006601!1.06e-11!102;UBERON:0007811!1.09e-11!86;UBERON:0003056!5.39e-11!49;UBERON:0000153!8.03e-09!94;UBERON:0000956!3.21e-08!21;UBERON:0001869!3.21e-08!21;UBERON:0000203!3.21e-08!21;UBERON:0002021!7.91e-07!10;UBERON:0000411!7.91e-07!10;UBERON:0001950!7.91e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.09e-23,73;UBERON:0000073,3.71e-22,54;UBERON:0001016,1.04e-21,75;UBERON:0001049,8.88e-21,52;UBERON:0005068,8.88e-21,52;UBERON:0006241,8.88e-21,52;UBERON:0007135,8.88e-21,52;UBERON:0000955,5.10e-19,47;UBERON:0006238,5.10e-19,47;UBERON:0002616,1.77e-18,46;UBERON:0002020,1.21e-17,34;UBERON:0003080,3.12e-17,40;UBERON:0004121,1.23e-16,95;UBERON:0000924,1.23e-16,95;UBERON:0006601,1.23e-16,95;UBERON:0002780,1.56e-16,39;UBERON:0001890,1.56e-16,39;UBERON:0006240,1.56e-16,39;UBERON:0002346,2.25e-16,64;UBERON:0003075,2.25e-16,64;UBERON:0007284,2.25e-16,64;UBERON:0003528,2.45e-16,29;UBERON:0002791,2.45e-16,29;UBERON:0001893,2.45e-16,29;UBERON:0010371,1.57e-15,73;UBERON:0003056,1.07e-13,49;UBERON:0000956,4.75e-11,21;UBERON:0001869,4.75e-11,21;UBERON:0000203,4.75e-11,21;UBERON:0010314,6.01e-11,92;UBERON:0002619,1.21e-08,17;UBERON:0002021,1.53e-08,10;UBERON:0000411,1.53e-08,10;UBERON:0001950,1.53e-08,10 | |||
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| |||
|short_description=p5@Ppp1r9b | |||
}} |
Revision as of 09:29, 4 August 2015
Short description: | p5@Ppp1r9b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Ppp1r9b_5end |
Coexpression cluster: | NA |
Association with transcript: | 162bp_to_NM_172261, uc007kzr.2_5end |
EntrezGene: | 217124 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.20e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.20e-11 | 23 |
ectodermal cell | 3.95e-08 | 44 |
neurectodermal cell | 3.95e-08 | 44 |
neural cell | 9.30e-08 | 43 |
neuron | 1.25e-07 | 33 |
neuronal stem cell | 1.25e-07 | 33 |
neuroblast | 1.25e-07 | 33 |
electrically signaling cell | 1.25e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.09e-23 | 73 |
regional part of nervous system | 3.71e-22 | 54 |
nervous system | 1.04e-21 | 75 |
neural tube | 8.88e-21 | 52 |
neural rod | 8.88e-21 | 52 |
future spinal cord | 8.88e-21 | 52 |
neural keel | 8.88e-21 | 52 |
brain | 5.10e-19 | 47 |
future brain | 5.10e-19 | 47 |
regional part of brain | 1.77e-18 | 46 |
gray matter | 1.21e-17 | 34 |
anterior neural tube | 3.12e-17 | 40 |
ectoderm-derived structure | 1.23e-16 | 95 |
ectoderm | 1.23e-16 | 95 |
presumptive ectoderm | 1.23e-16 | 95 |
regional part of forebrain | 1.56e-16 | 39 |
forebrain | 1.56e-16 | 39 |
future forebrain | 1.56e-16 | 39 |
neurectoderm | 2.25e-16 | 64 |
neural plate | 2.25e-16 | 64 |
presumptive neural plate | 2.25e-16 | 64 |
brain grey matter | 2.45e-16 | 29 |
regional part of telencephalon | 2.45e-16 | 29 |
telencephalon | 2.45e-16 | 29 |
ecto-epithelium | 1.57e-15 | 73 |
pre-chordal neural plate | 1.07e-13 | 49 |
cerebral cortex | 4.75e-11 | 21 |
cerebral hemisphere | 4.75e-11 | 21 |
pallium | 4.75e-11 | 21 |
structure with developmental contribution from neural crest | 6.01e-11 | 92 |
regional part of cerebral cortex | 1.21e-08 | 17 |
occipital lobe | 1.53e-08 | 10 |
visual cortex | 1.53e-08 | 10 |
neocortex | 1.53e-08 | 10 |