FFCP PHASE1:Mm9::chr5:141124907..141124918,-: Difference between revisions
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{{FFCP|EntrezGene=78339|HGNC=|MCL_coexpression_id=13|UniProt=Q6P5F7|association_with_transcript=66bp_to_ENSMUST00000042661,NM_175274,uc009ahw.2,uc012egc.1_5end|description=CAGE_peak_3_at_Ttyh3_5end|id=chr5:141124907..141124918,-|ontology_enrichment_celltype=CL:0000221!8.20e-12!44;CL:0000133!8.20e-12!44;CL:0002319!2.18e-11!43;CL:0000540!4.47e-10!33;CL:0000047!4.47e-10!33;CL:0000031!4.47e-10!33;CL:0000404!4.47e-10!33;CL:0000117!2.49e-09!23;CL:0000337!2.49e-09!23;CL:0000055!1.10e-07!50;CL:0000393!6.43e-07!39;CL:0000211!6.43e-07!39|ontology_enrichment_celltype_v019_2=CL:0000221,7.19e-13,44;CL:0000133,7.19e-13,44;CL:0002319,2.14e-12,43;CL:0000540,4.60e-11,33;CL:0000047,4.60e-11,33;CL:0000031,4.60e-11,33;CL:0000404,4.60e-11,33;CL:0000117,1.11e-10,23;CL:0000337,1.11e-10,23;CL:0000393,2.30e-07,39;CL:0000211,2.30e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.79e-28!73;UBERON:0005743!1.79e-28!73;UBERON:0004121!2.58e-28!102;UBERON:0000924!2.58e-28!102;UBERON:0006601!2.58e-28!102;UBERON:0000073!5.44e-27!75;UBERON:0001016!5.44e-27!75;UBERON:0002346!9.75e-26!71;UBERON:0003075!9.75e-26!71;UBERON:0007284!9.75e-26!71;UBERON:0001049!1.88e-24!52;UBERON:0005068!1.88e-24!52;UBERON:0006241!1.88e-24!52;UBERON:0007135!1.88e-24!52;UBERON:0000955!9.72e-23!50;UBERON:0006238!9.72e-23!50;UBERON:0000033!2.91e-22!63;UBERON:0002616!5.30e-22!49;UBERON:0003056!9.72e-19!49;UBERON:0003080!5.70e-18!40;UBERON:0002780!2.32e-17!39;UBERON:0001890!2.32e-17!39;UBERON:0006240!2.32e-17!39;UBERON:0002020!2.90e-17!34;UBERON:0002791!4.00e-14!29;UBERON:0003528!4.00e-14!29;UBERON:0001893!4.00e-14!29;UBERON:0000153!2.54e-12!94;UBERON:0007811!3.79e-12!86;UBERON:0000956!3.26e-10!21;UBERON:0001869!3.26e-10!21;UBERON:0000203!3.26e-10!21;UBERON:0002619!3.31e-08!17;UBERON:0003076!4.40e-07!12;UBERON:0003057!4.40e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.15e-31,73;UBERON:0004121,1.70e-30,95;UBERON:0000924,1.70e-30,95;UBERON:0006601,1.70e-30,95;UBERON:0010371,5.78e-30,73;UBERON:0001016,7.89e-30,75;UBERON:0000073,3.05e-28,54;UBERON:0002346,3.17e-28,64;UBERON:0003075,3.17e-28,64;UBERON:0007284,3.17e-28,64;UBERON:0001049,3.40e-27,52;UBERON:0005068,3.40e-27,52;UBERON:0006241,3.40e-27,52;UBERON:0007135,3.40e-27,52;UBERON:0000955,1.24e-23,47;UBERON:0006238,1.24e-23,47;UBERON:0002616,8.06e-23,46;UBERON:0003056,2.31e-20,49;UBERON:0003080,6.23e-20,40;UBERON:0002780,3.00e-19,39;UBERON:0001890,3.00e-19,39;UBERON:0006240,3.00e-19,39;UBERON:0002020,3.86e-19,34;UBERON:0010314,3.81e-17,92;UBERON:0003528,1.27e-15,29;UBERON:0002791,1.27e-15,29;UBERON:0001893,1.27e-15,29;UBERON:0000956,3.02e-11,21;UBERON:0001869,3.02e-11,21;UBERON:0000203,3.02e-11,21;UBERON:0002619,5.32e-09,17;UBERON:0003076,9.57e-08,12;UBERON:0003057,9.57e-08,12;UBERON:0000025,6.02e-07,114|phase1_expression=1.92178616525753,0.348975407639361,0.454999239389536,0.60492842261366,1.50268718983904,0.671517087647559,1.16806320297763,0.516493293766305,0,0.468129052643987,0,0.239316476986009,2.39681021903688,1.66098764596095,0,0.404950534779652,0.699561878128147,0.473193248037357,0.548457734422955,0.42438965179803,1.19060606211498,0.198581902401771,0,0.319984845586813,0.45881856213434,0,0.430761996159075,0.861884930743556,1.33016393619462,1.26015064879965,0.665191531965914,0.635030673459631,1.23012957516914,0,0.288851619751275,0.831173226792462,0.204169356262369,0,0,0.523523743973798,1.17646297606203,0,0.485510353031154,0.377690453926732,0.506884656097573,0.550640256485045,1.56478268869608,5.66865406589161,2.63623419281366,1.74986909166855,2.79972843250725,1.43752564364972,0,2.90144856804538,1.68046899571232,0.257259436035947,0.85960031981627,0.515672092277442,8.9019242778223,1.05798195854407,0,3.04960078862219,0,1.7997994345628,0.988866362566974,0.7104801149461,2.39680088414724,5.37905627450176,3.42175720617976,3.78016627328734,2.94454945891935,4.85606673486466,4.63823935998388,2.57230678351403,2.68367318851062,1.83843757322004,2.20231761998777,3.57524546638526,3.84016333140609,8.17694983927202,5.21479568533735,2.08365348222704,3.90856198601933,1.68828783009504,3.20876320331301,4.71405736757868,5.41012387036591,6.15118171223492,0.454357159999104,0.68014404096107,0.869593466105033,0,0,0.539703191637817,0,0,0.983110940922263,0.340860645156116,0.779358013808606,0,2.95771181531029,0,2.54805239706646,0,0.432982082022428,0.253359865475099,0,1.1418387971906,0.517875767294343,1.1875371125186,2.4287945747259,1.21786191324856,1.38369298353635,1.3565037649736,1.99900802130698,1.0053327306374,0.741584903203122,0.289198713839823,0,1.61766849947409,0.441683036920787,0.484875253135222,0,4.9772735491963,5.86450779077674,0.255457055208591,0.479260498023681,0,0.254140454146129,4.79330046095433,5.49000723382352,8.67015029578764,5.38855392596057,5.37002460393694,5.40248915854856,3.89379031362618,2.85150218780886,0.870848794270651,2.0217820674694,0.841767423545896,2.60240885925407,1.14951052216736,1.26043490863744,1.20563854268572,2.24520447199382,3.330956727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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:78339 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6P5F7 | |||
|association_with_transcript=66bp_to_ENSMUST00000042661,NM_175274,uc009ahw.2,uc012egc.1_5end | |||
|cluster_id=chr5:141124907..141124918,- | |||
|description=CAGE_peak_3_at_Ttyh3_5end | |||
|id=chr5:141124907..141124918,- | |||
|ontology_enrichment_celltype=CL:0000221!8.20e-12!44;CL:0000133!8.20e-12!44;CL:0002319!2.18e-11!43;CL:0000540!4.47e-10!33;CL:0000047!4.47e-10!33;CL:0000031!4.47e-10!33;CL:0000404!4.47e-10!33;CL:0000117!2.49e-09!23;CL:0000337!2.49e-09!23;CL:0000055!1.10e-07!50;CL:0000393!6.43e-07!39;CL:0000211!6.43e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.19e-13,44;CL:0000133,7.19e-13,44;CL:0002319,2.14e-12,43;CL:0000540,4.60e-11,33;CL:0000047,4.60e-11,33;CL:0000031,4.60e-11,33;CL:0000404,4.60e-11,33;CL:0000117,1.11e-10,23;CL:0000337,1.11e-10,23;CL:0000393,2.30e-07,39;CL:0000211,2.30e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.79e-28!73;UBERON:0005743!1.79e-28!73;UBERON:0004121!2.58e-28!102;UBERON:0000924!2.58e-28!102;UBERON:0006601!2.58e-28!102;UBERON:0000073!5.44e-27!75;UBERON:0001016!5.44e-27!75;UBERON:0002346!9.75e-26!71;UBERON:0003075!9.75e-26!71;UBERON:0007284!9.75e-26!71;UBERON:0001049!1.88e-24!52;UBERON:0005068!1.88e-24!52;UBERON:0006241!1.88e-24!52;UBERON:0007135!1.88e-24!52;UBERON:0000955!9.72e-23!50;UBERON:0006238!9.72e-23!50;UBERON:0000033!2.91e-22!63;UBERON:0002616!5.30e-22!49;UBERON:0003056!9.72e-19!49;UBERON:0003080!5.70e-18!40;UBERON:0002780!2.32e-17!39;UBERON:0001890!2.32e-17!39;UBERON:0006240!2.32e-17!39;UBERON:0002020!2.90e-17!34;UBERON:0002791!4.00e-14!29;UBERON:0003528!4.00e-14!29;UBERON:0001893!4.00e-14!29;UBERON:0000153!2.54e-12!94;UBERON:0007811!3.79e-12!86;UBERON:0000956!3.26e-10!21;UBERON:0001869!3.26e-10!21;UBERON:0000203!3.26e-10!21;UBERON:0002619!3.31e-08!17;UBERON:0003076!4.40e-07!12;UBERON:0003057!4.40e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.15e-31,73;UBERON:0004121,1.70e-30,95;UBERON:0000924,1.70e-30,95;UBERON:0006601,1.70e-30,95;UBERON:0010371,5.78e-30,73;UBERON:0001016,7.89e-30,75;UBERON:0000073,3.05e-28,54;UBERON:0002346,3.17e-28,64;UBERON:0003075,3.17e-28,64;UBERON:0007284,3.17e-28,64;UBERON:0001049,3.40e-27,52;UBERON:0005068,3.40e-27,52;UBERON:0006241,3.40e-27,52;UBERON:0007135,3.40e-27,52;UBERON:0000955,1.24e-23,47;UBERON:0006238,1.24e-23,47;UBERON:0002616,8.06e-23,46;UBERON:0003056,2.31e-20,49;UBERON:0003080,6.23e-20,40;UBERON:0002780,3.00e-19,39;UBERON:0001890,3.00e-19,39;UBERON:0006240,3.00e-19,39;UBERON:0002020,3.86e-19,34;UBERON:0010314,3.81e-17,92;UBERON:0003528,1.27e-15,29;UBERON:0002791,1.27e-15,29;UBERON:0001893,1.27e-15,29;UBERON:0000956,3.02e-11,21;UBERON:0001869,3.02e-11,21;UBERON:0000203,3.02e-11,21;UBERON:0002619,5.32e-09,17;UBERON:0003076,9.57e-08,12;UBERON:0003057,9.57e-08,12;UBERON:0000025,6.02e-07,114 | |||
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| |||
|short_description=p3@Ttyh3 | |||
}} |
Revision as of 23:41, 3 August 2015
Short description: | p3@Ttyh3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ttyh3_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 66bp_to_ENSMUST00000042661, NM_175274, uc009ahw.2, uc012egc.1_5end |
EntrezGene: | 78339 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.19e-13 | 44 |
neurectodermal cell | 7.19e-13 | 44 |
neural cell | 2.14e-12 | 43 |
neuron | 4.60e-11 | 33 |
neuronal stem cell | 4.60e-11 | 33 |
neuroblast | 4.60e-11 | 33 |
electrically signaling cell | 4.60e-11 | 33 |
CNS neuron (sensu Vertebrata) | 1.11e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.11e-10 | 23 |
electrically responsive cell | 2.30e-07 | 39 |
electrically active cell | 2.30e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.15e-31 | 73 |
ectoderm-derived structure | 1.70e-30 | 95 |
ectoderm | 1.70e-30 | 95 |
presumptive ectoderm | 1.70e-30 | 95 |
ecto-epithelium | 5.78e-30 | 73 |
nervous system | 7.89e-30 | 75 |
regional part of nervous system | 3.05e-28 | 54 |
neurectoderm | 3.17e-28 | 64 |
neural plate | 3.17e-28 | 64 |
presumptive neural plate | 3.17e-28 | 64 |
neural tube | 3.40e-27 | 52 |
neural rod | 3.40e-27 | 52 |
future spinal cord | 3.40e-27 | 52 |
neural keel | 3.40e-27 | 52 |
brain | 1.24e-23 | 47 |
future brain | 1.24e-23 | 47 |
regional part of brain | 8.06e-23 | 46 |
pre-chordal neural plate | 2.31e-20 | 49 |
anterior neural tube | 6.23e-20 | 40 |
regional part of forebrain | 3.00e-19 | 39 |
forebrain | 3.00e-19 | 39 |
future forebrain | 3.00e-19 | 39 |
gray matter | 3.86e-19 | 34 |
structure with developmental contribution from neural crest | 3.81e-17 | 92 |
brain grey matter | 1.27e-15 | 29 |
regional part of telencephalon | 1.27e-15 | 29 |
telencephalon | 1.27e-15 | 29 |
cerebral cortex | 3.02e-11 | 21 |
cerebral hemisphere | 3.02e-11 | 21 |
pallium | 3.02e-11 | 21 |
regional part of cerebral cortex | 5.32e-09 | 17 |
posterior neural tube | 9.57e-08 | 12 |
chordal neural plate | 9.57e-08 | 12 |
tube | 6.02e-07 | 114 |