FFCP PHASE1:Mm9::chr6:124864957..124864993,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=3540|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:124864957..124864993,-|id=chr6:124864957..124864993,-|ontology_enrichment_celltype=CL:0000117!5.21e-10!23;CL:0000337!5.21e-10!23;CL:0000055!2.65e-09!50;CL:0000221!2.88e-08!44;CL:0000133!2.88e-08!44;CL:0002319!4.03e-08!43;CL:0000393!8.23e-07!39;CL:0000211!8.23e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.94e-10,23;CL:0000337,1.94e-10,23;CL:0000221,5.94e-08,44;CL:0000133,5.94e-08,44;CL:0002319,8.37e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.66e-15!34;UBERON:0000025!1.08e-14!114;UBERON:0004111!4.24e-13!122;UBERON:0001017!4.38e-13!73;UBERON:0005743!4.38e-13!73;UBERON:0001049!4.48e-13!52;UBERON:0005068!4.48e-13!52;UBERON:0006241!4.48e-13!52;UBERON:0007135!4.48e-13!52;UBERON:0002791!6.27e-13!29;UBERON:0003528!6.27e-13!29;UBERON:0001893!6.27e-13!29;UBERON:0002780!9.36e-13!39;UBERON:0001890!9.36e-13!39;UBERON:0006240!9.36e-13!39;UBERON:0000073!6.00e-12!75;UBERON:0001016!6.00e-12!75;UBERON:0003080!7.11e-12!40;UBERON:0003056!9.72e-12!49;UBERON:0002616!4.83e-11!49;UBERON:0000955!1.01e-10!50;UBERON:0006238!1.01e-10!50;UBERON:0002346!1.12e-10!71;UBERON:0003075!1.12e-10!71;UBERON:0007284!1.12e-10!71;UBERON:0000033!3.14e-10!63;UBERON:0000956!5.17e-10!21;UBERON:0001869!5.17e-10!21;UBERON:0000203!5.17e-10!21;UBERON:0004121!6.64e-10!102;UBERON:0000924!6.64e-10!102;UBERON:0006601!6.64e-10!102;UBERON:0002619!3.10e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.60e-16,34;UBERON:0000025,1.79e-14,114;UBERON:0000073,8.19e-14,54;UBERON:0001049,2.79e-13,52;UBERON:0005068,2.79e-13,52;UBERON:0006241,2.79e-13,52;UBERON:0007135,2.79e-13,52;UBERON:0003528,3.32e-13,29;UBERON:0002791,3.32e-13,29;UBERON:0001893,3.32e-13,29;UBERON:0002780,5.01e-13,39;UBERON:0001890,5.01e-13,39;UBERON:0006240,5.01e-13,39;UBERON:0001017,7.34e-13,73;UBERON:0004111,1.12e-12,122;UBERON:0003080,3.87e-12,40;UBERON:0003056,9.83e-12,49;UBERON:0001016,1.15e-11,75;UBERON:0002616,3.44e-11,46;UBERON:0002346,3.85e-11,64;UBERON:0003075,3.85e-11,64;UBERON:0007284,3.85e-11,64;UBERON:0000955,7.57e-11,47;UBERON:0006238,7.57e-11,47;UBERON:0000956,3.22e-10,21;UBERON:0001869,3.22e-10,21;UBERON:0000203,3.22e-10,21;UBERON:0010314,4.27e-10,92;UBERON:0004121,1.08e-09,95;UBERON:0000924,1.08e-09,95;UBERON:0006601,1.08e-09,95;UBERON:0010371,5.87e-09,73;UBERON:0002619,2.13e-08,17|phase1_expression=0.80074423552397,0,0.454999239389536,1.51232105653415,1.00179145989269,1.51091344720701,0.467225281191051,1.03298658753261,0.422366166455,0.70219357896598,0,0,0,0.174840804837995,0,0.202475267389826,0.699561878128147,0.315462165358238,0.274228867211478,0.42438965179803,2.72138528483423,0,0,2.55987876469451,1.60586496747019,1.72269589234506,0.430761996159075,1.939241094173,3.80046838912748,1.26015064879965,0.886922042621219,0.635030673459631,0.61506478758457,0,1.44425809875637,1.16364251750945,1.02084678131185,0.418531630736908,0.7813353445238,0,0,1.36609096991689,0,1.88845226963366,1.92616169317078,1.65192076945513,2.34717403304412,4.79655344036982,5.4921545683618,6.02732687130279,5.31948402176378,10.062679505548,0,0,0,3.08711323243136,2.57880095944881,5.15672092277442,6.06949382578793,6.34789175126439,3.1691570175309,3.72728985276045,8.00365316500025,11.2487464660175,8.89979726310277,9.9467216092454,4.19440154725767,9.60545763303886,9.85051316930538,11.6105106965254,5.04779907243317,3.14216082844184,7.28866185140325,3.79721477566358,6.3258010872036,4.5960939330501,0,4.59674417106676,5.37622866396852,7.12185953743047,9.60620257825301,13.022834263919,2.23346399201105,2.8138130501584,3.0559649555362,6.48182888042069,6.83384067835694,5.40558392893372,0.605809546665472,0.529000920747499,2.02905142091174,7.74381489283248,4.0798280022465,13.4925797909454,9.09686984426737,4.92829575807069,1.96622188184453,8.35108580632483,7.27400812888033,7.0667914902068,2.53518155598025,0,5.09610479413291,0,0.649473123033642,1.01343946190039,1.01104889002957,3.31133251185274,1.29468941823586,1.1875371125186,1.56136794089522,1.52232739156071,1.38369298353635,2.41156224884196,1.41106448562846,2.01066546127481,0.494389935468748,2.31358971071859,0,1.61766849947409,1.10420759230197,1.93950101254089,0,1.17112318804619,2.30391377494801,1.02182822083437,0.11981512450592,0,0.127070227073065,0.449371918214468,2.74500361691176,5.78010019719176,2.43354048269187,2.81287003063364,2.0778804455956,2.27137768294861,3.1570202793598,1.11966273549084,0.252722758433675,2.31486041475121,1.95180664444056,2.98872735763515,0.720248519221397,3.61691562805716,2.9255694635071,2.3060469651273,2.71735001223214,0.776110112217047,1.72454394346274,0.378212160335639,0.527853372491847,0.43839146485515,2.78047249225598,0.348252166522167,0.61734640922383,1.99034266818493,0,0,0,1.24275463521301,0.703578179943289,3.06105504483725,1.65721314909647,4.52557733019029,3.08534225774756,3.95307706075693,2.41446061259657,1.75148013550754,2.139278048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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=3540 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr6:124864957..124864993,- | |||
|description=CAGE_peak_at_chr6:124864957..124864993,- | |||
|id=chr6:124864957..124864993,- | |||
|ontology_enrichment_celltype=CL:0000117!5.21e-10!23;CL:0000337!5.21e-10!23;CL:0000055!2.65e-09!50;CL:0000221!2.88e-08!44;CL:0000133!2.88e-08!44;CL:0002319!4.03e-08!43;CL:0000393!8.23e-07!39;CL:0000211!8.23e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.94e-10,23;CL:0000337,1.94e-10,23;CL:0000221,5.94e-08,44;CL:0000133,5.94e-08,44;CL:0002319,8.37e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.66e-15!34;UBERON:0000025!1.08e-14!114;UBERON:0004111!4.24e-13!122;UBERON:0001017!4.38e-13!73;UBERON:0005743!4.38e-13!73;UBERON:0001049!4.48e-13!52;UBERON:0005068!4.48e-13!52;UBERON:0006241!4.48e-13!52;UBERON:0007135!4.48e-13!52;UBERON:0002791!6.27e-13!29;UBERON:0003528!6.27e-13!29;UBERON:0001893!6.27e-13!29;UBERON:0002780!9.36e-13!39;UBERON:0001890!9.36e-13!39;UBERON:0006240!9.36e-13!39;UBERON:0000073!6.00e-12!75;UBERON:0001016!6.00e-12!75;UBERON:0003080!7.11e-12!40;UBERON:0003056!9.72e-12!49;UBERON:0002616!4.83e-11!49;UBERON:0000955!1.01e-10!50;UBERON:0006238!1.01e-10!50;UBERON:0002346!1.12e-10!71;UBERON:0003075!1.12e-10!71;UBERON:0007284!1.12e-10!71;UBERON:0000033!3.14e-10!63;UBERON:0000956!5.17e-10!21;UBERON:0001869!5.17e-10!21;UBERON:0000203!5.17e-10!21;UBERON:0004121!6.64e-10!102;UBERON:0000924!6.64e-10!102;UBERON:0006601!6.64e-10!102;UBERON:0002619!3.10e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,7.60e-16,34;UBERON:0000025,1.79e-14,114;UBERON:0000073,8.19e-14,54;UBERON:0001049,2.79e-13,52;UBERON:0005068,2.79e-13,52;UBERON:0006241,2.79e-13,52;UBERON:0007135,2.79e-13,52;UBERON:0003528,3.32e-13,29;UBERON:0002791,3.32e-13,29;UBERON:0001893,3.32e-13,29;UBERON:0002780,5.01e-13,39;UBERON:0001890,5.01e-13,39;UBERON:0006240,5.01e-13,39;UBERON:0001017,7.34e-13,73;UBERON:0004111,1.12e-12,122;UBERON:0003080,3.87e-12,40;UBERON:0003056,9.83e-12,49;UBERON:0001016,1.15e-11,75;UBERON:0002616,3.44e-11,46;UBERON:0002346,3.85e-11,64;UBERON:0003075,3.85e-11,64;UBERON:0007284,3.85e-11,64;UBERON:0000955,7.57e-11,47;UBERON:0006238,7.57e-11,47;UBERON:0000956,3.22e-10,21;UBERON:0001869,3.22e-10,21;UBERON:0000203,3.22e-10,21;UBERON:0010314,4.27e-10,92;UBERON:0004121,1.08e-09,95;UBERON:0000924,1.08e-09,95;UBERON:0006601,1.08e-09,95;UBERON:0010371,5.87e-09,73;UBERON:0002619,2.13e-08,17 | |||
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| |||
|short_description=p@chr6:124864957..124864993,- | |||
}} |
Latest revision as of 03:40, 5 August 2015
Short description: | p@chr6:124864957..124864993, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:124864957..124864993, - |
Coexpression cluster: | MCL_coexpression_mm9:3540 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.94e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.94e-10 | 23 |
ectodermal cell | 5.94e-08 | 44 |
neurectodermal cell | 5.94e-08 | 44 |
neural cell | 8.37e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
gray matter | 7.60e-16 | 34 |
tube | 1.79e-14 | 114 |
regional part of nervous system | 8.19e-14 | 54 |
neural tube | 2.79e-13 | 52 |
neural rod | 2.79e-13 | 52 |
future spinal cord | 2.79e-13 | 52 |
neural keel | 2.79e-13 | 52 |
brain grey matter | 3.32e-13 | 29 |
regional part of telencephalon | 3.32e-13 | 29 |
telencephalon | 3.32e-13 | 29 |
regional part of forebrain | 5.01e-13 | 39 |
forebrain | 5.01e-13 | 39 |
future forebrain | 5.01e-13 | 39 |
central nervous system | 7.34e-13 | 73 |
anatomical conduit | 1.12e-12 | 122 |
anterior neural tube | 3.87e-12 | 40 |
pre-chordal neural plate | 9.83e-12 | 49 |
nervous system | 1.15e-11 | 75 |
regional part of brain | 3.44e-11 | 46 |
neurectoderm | 3.85e-11 | 64 |
neural plate | 3.85e-11 | 64 |
presumptive neural plate | 3.85e-11 | 64 |
brain | 7.57e-11 | 47 |
future brain | 7.57e-11 | 47 |
cerebral cortex | 3.22e-10 | 21 |
cerebral hemisphere | 3.22e-10 | 21 |
pallium | 3.22e-10 | 21 |
structure with developmental contribution from neural crest | 4.27e-10 | 92 |
ectoderm-derived structure | 1.08e-09 | 95 |
ectoderm | 1.08e-09 | 95 |
presumptive ectoderm | 1.08e-09 | 95 |
ecto-epithelium | 5.87e-09 | 73 |
regional part of cerebral cortex | 2.13e-08 | 17 |