FFCP PHASE1:Mm9::chr7:149135593..149135702,+: Difference between revisions
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{{FFCP|EntrezGene=75770|HGNC=|MCL_coexpression_id=13|UniProt=Q69Z98|association_with_transcript=0bp_to_ENSMUST00000018971,ENSMUST00000078200,NM_029426,uc009kme.1,uc009kmf.1,uc009kmg.1,uc009kmh.1_5end|description=CAGE_peak_1_at_Brsk2_5end|id=chr7:149135593..149135702,+|ontology_enrichment_celltype=CL:0000540!1.18e-17!33;CL:0000047!1.18e-17!33;CL:0000031!1.18e-17!33;CL:0000404!1.18e-17!33;CL:0000221!1.22e-15!44;CL:0000133!1.22e-15!44;CL:0002319!3.02e-15!43;CL:0000117!3.03e-15!23;CL:0000337!3.03e-15!23;CL:0000393!5.66e-12!39;CL:0000211!5.66e-12!39;CL:0000055!3.07e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.79e-20,33;CL:0000047,1.79e-20,33;CL:0000031,1.79e-20,33;CL:0000404,1.79e-20,33;CL:0000117,1.22e-17,23;CL:0000337,1.22e-17,23;CL:0000221,2.34e-17,44;CL:0000133,2.34e-17,44;CL:0002319,6.77e-17,43;CL:0000393,5.19e-15,39;CL:0000211,5.19e-15,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.50e-33!75;UBERON:0001016!2.50e-33!75;UBERON:0001017!4.39e-33!73;UBERON:0005743!4.39e-33!73;UBERON:0004121!2.19e-32!102;UBERON:0000924!2.19e-32!102;UBERON:0006601!2.19e-32!102;UBERON:0002346!6.23e-29!71;UBERON:0003075!6.23e-29!71;UBERON:0007284!6.23e-29!71;UBERON:0000033!4.18e-27!63;UBERON:0001049!1.22e-24!52;UBERON:0005068!1.22e-24!52;UBERON:0006241!1.22e-24!52;UBERON:0007135!1.22e-24!52;UBERON:0000955!7.59e-24!50;UBERON:0006238!7.59e-24!50;UBERON:0003056!1.33e-23!49;UBERON:0002616!2.21e-23!49;UBERON:0003080!4.99e-20!40;UBERON:0002780!2.21e-19!39;UBERON:0001890!2.21e-19!39;UBERON:0006240!2.21e-19!39;UBERON:0002020!1.06e-18!34;UBERON:0002791!3.17e-16!29;UBERON:0003528!3.17e-16!29;UBERON:0001893!3.17e-16!29;UBERON:0007811!8.05e-13!86;UBERON:0000956!1.23e-11!21;UBERON:0001869!1.23e-11!21;UBERON:0000203!1.23e-11!21;UBERON:0000153!5.49e-10!94;UBERON:0002619!6.14e-09!17;UBERON:0002021!2.15e-07!10;UBERON:0000411!2.15e-07!10;UBERON:0001950!2.15e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.19e-38,75;UBERON:0001017,1.02e-37,73;UBERON:0004121,1.92e-35,95;UBERON:0000924,1.92e-35,95;UBERON:0006601,1.92e-35,95;UBERON:0002346,4.42e-34,64;UBERON:0003075,4.42e-34,64;UBERON:0007284,4.42e-34,64;UBERON:0000073,3.22e-30,54;UBERON:0010371,5.13e-29,73;UBERON:0001049,1.69e-28,52;UBERON:0005068,1.69e-28,52;UBERON:0006241,1.69e-28,52;UBERON:0007135,1.69e-28,52;UBERON:0003056,5.10e-27,49;UBERON:0000955,3.94e-25,47;UBERON:0006238,3.94e-25,47;UBERON:0002616,1.35e-24,46;UBERON:0003080,8.20e-23,40;UBERON:0002780,4.70e-22,39;UBERON:0001890,4.70e-22,39;UBERON:0006240,4.70e-22,39;UBERON:0002020,3.09e-21,34;UBERON:0010314,5.54e-21,92;UBERON:0003528,2.51e-18,29;UBERON:0002791,2.51e-18,29;UBERON:0001893,2.51e-18,29;UBERON:0000956,5.97e-13,21;UBERON:0001869,5.97e-13,21;UBERON:0000203,5.97e-13,21;UBERON:0002619,8.35e-10,17;UBERON:0002021,2.04e-08,10;UBERON:0000411,2.04e-08,10;UBERON:0001950,2.04e-08,10|phase1_expression=10.890121603126,0,0,0,0.500895729946347,0,0,0.129123323441576,0.140788722151667,0.234064526321993,0,0,0,0,0,0,0,0,0,0,9.09963204616447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,0,0.58328969722285,0.55994568650145,1.43752564364972,0.167782606057736,0,0,0,0,0,49.5675329106015,58.1890077199236,51.3403436840005,0.338844532069132,0,0,0,0,3.29560121570245,4.61061966385865,52.2595646034727,52.2472981343643,44.7992167678444,27.4224945027651,26.283356373242,45.321595709533,48.8811902193005,46.8801581171111,39.6417171597799,47.2443150915195,48.8468775754854,50.2486756252039,46.1097723756145,47.9240300912219,40.4815348552002,23.0732670112989,33.1572197675678,27.4004584490511,33.172601626191,38.5846852858372,2.72614295999463,4.45872204630035,0,0,0,0.539703191637817,0,0,2.10666630197628,0,0,0,12.1125341007945,0,0,0,0,0,0,1.82694207550496,0,1.1875371125186,2.25530924795977,1.21786191324856,1.84492397804847,1.50722640552623,1.76383060703557,0.502666365318702,0,0.144599356919912,0,0.161766849947409,0,0,0,41.5748731756397,38.7476407604892,0.255457055208591,0,0,0,43.8886573456131,38.4300506367646,38.5758860986494,47.2802150922992,65.4631570765646,41.557608911912,45.2653123959044,0,0,0.252722758433675,6.52369753248069,4.42409506073193,12.4147136394075,14.7650946440386,10.2479276128286,22.0438257250302,25.8789714975397,35.231848434458,12.4177617954728,0.215567992932842,0,0,0,0,0,0.411564272815887,0.398068533636986,0,0,0,0,0.234526059981096,0,0,0,0.154267112887378,0,0,0,0,0,0.0810688095458557,0,0,0,39.74480027862,44.2489833230923,0.991256348951394,0,0.639864751605702,3.71578674976702,2.44848176511977,1.81515172161008,1.55664630691409,0.951128130562796,0.949058123089023,0.494096864172033,1.50801125280162,0.795825888164603,1.55971269695296,0.898819408654221,0.216138049874694,0.796565093017469,0.379335801906163,0.799739588268102,0,0.203651327845314,0.193952487167626,0.140271639780637,0,0,0,0,0,0,0,0,0.202860121388503,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0.252578877947112,0.179397413521912,0,0,0,0.162964976442026,0,0,0,0,0,0.315270288212382,0,0.1594547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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:75770 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q69Z98 | |||
|association_with_transcript=0bp_to_ENSMUST00000018971,ENSMUST00000078200,NM_029426,uc009kme.1,uc009kmf.1,uc009kmg.1,uc009kmh.1_5end | |||
|cluster_id=chr7:149135593..149135702,+ | |||
|description=CAGE_peak_1_at_Brsk2_5end | |||
|id=chr7:149135593..149135702,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.18e-17!33;CL:0000047!1.18e-17!33;CL:0000031!1.18e-17!33;CL:0000404!1.18e-17!33;CL:0000221!1.22e-15!44;CL:0000133!1.22e-15!44;CL:0002319!3.02e-15!43;CL:0000117!3.03e-15!23;CL:0000337!3.03e-15!23;CL:0000393!5.66e-12!39;CL:0000211!5.66e-12!39;CL:0000055!3.07e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.79e-20,33;CL:0000047,1.79e-20,33;CL:0000031,1.79e-20,33;CL:0000404,1.79e-20,33;CL:0000117,1.22e-17,23;CL:0000337,1.22e-17,23;CL:0000221,2.34e-17,44;CL:0000133,2.34e-17,44;CL:0002319,6.77e-17,43;CL:0000393,5.19e-15,39;CL:0000211,5.19e-15,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.50e-33!75;UBERON:0001016!2.50e-33!75;UBERON:0001017!4.39e-33!73;UBERON:0005743!4.39e-33!73;UBERON:0004121!2.19e-32!102;UBERON:0000924!2.19e-32!102;UBERON:0006601!2.19e-32!102;UBERON:0002346!6.23e-29!71;UBERON:0003075!6.23e-29!71;UBERON:0007284!6.23e-29!71;UBERON:0000033!4.18e-27!63;UBERON:0001049!1.22e-24!52;UBERON:0005068!1.22e-24!52;UBERON:0006241!1.22e-24!52;UBERON:0007135!1.22e-24!52;UBERON:0000955!7.59e-24!50;UBERON:0006238!7.59e-24!50;UBERON:0003056!1.33e-23!49;UBERON:0002616!2.21e-23!49;UBERON:0003080!4.99e-20!40;UBERON:0002780!2.21e-19!39;UBERON:0001890!2.21e-19!39;UBERON:0006240!2.21e-19!39;UBERON:0002020!1.06e-18!34;UBERON:0002791!3.17e-16!29;UBERON:0003528!3.17e-16!29;UBERON:0001893!3.17e-16!29;UBERON:0007811!8.05e-13!86;UBERON:0000956!1.23e-11!21;UBERON:0001869!1.23e-11!21;UBERON:0000203!1.23e-11!21;UBERON:0000153!5.49e-10!94;UBERON:0002619!6.14e-09!17;UBERON:0002021!2.15e-07!10;UBERON:0000411!2.15e-07!10;UBERON:0001950!2.15e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.19e-38,75;UBERON:0001017,1.02e-37,73;UBERON:0004121,1.92e-35,95;UBERON:0000924,1.92e-35,95;UBERON:0006601,1.92e-35,95;UBERON:0002346,4.42e-34,64;UBERON:0003075,4.42e-34,64;UBERON:0007284,4.42e-34,64;UBERON:0000073,3.22e-30,54;UBERON:0010371,5.13e-29,73;UBERON:0001049,1.69e-28,52;UBERON:0005068,1.69e-28,52;UBERON:0006241,1.69e-28,52;UBERON:0007135,1.69e-28,52;UBERON:0003056,5.10e-27,49;UBERON:0000955,3.94e-25,47;UBERON:0006238,3.94e-25,47;UBERON:0002616,1.35e-24,46;UBERON:0003080,8.20e-23,40;UBERON:0002780,4.70e-22,39;UBERON:0001890,4.70e-22,39;UBERON:0006240,4.70e-22,39;UBERON:0002020,3.09e-21,34;UBERON:0010314,5.54e-21,92;UBERON:0003528,2.51e-18,29;UBERON:0002791,2.51e-18,29;UBERON:0001893,2.51e-18,29;UBERON:0000956,5.97e-13,21;UBERON:0001869,5.97e-13,21;UBERON:0000203,5.97e-13,21;UBERON:0002619,8.35e-10,17;UBERON:0002021,2.04e-08,10;UBERON:0000411,2.04e-08,10;UBERON:0001950,2.04e-08,10 | |||
|phase1_expression=10.890121603126,0,0,0,0.500895729946347,0,0,0.129123323441576,0.140788722151667,0.234064526321993,0,0,0,0,0,0,0,0,0,0,9.09963204616447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,0,0.58328969722285,0.55994568650145,1.43752564364972,0.167782606057736,0,0,0,0,0,49.5675329106015,58.1890077199236,51.3403436840005,0.338844532069132,0,0,0,0,3.29560121570245,4.61061966385865,52.2595646034727,52.2472981343643,44.7992167678444,27.4224945027651,26.283356373242,45.321595709533,48.8811902193005,46.8801581171111,39.6417171597799,47.2443150915195,48.8468775754854,50.2486756252039,46.1097723756145,47.9240300912219,40.4815348552002,23.0732670112989,33.1572197675678,27.4004584490511,33.172601626191,38.5846852858372,2.72614295999463,4.45872204630035,0,0,0,0.539703191637817,0,0,2.10666630197628,0,0,0,12.1125341007945,0,0,0,0,0,0,1.82694207550496,0,1.1875371125186,2.25530924795977,1.21786191324856,1.84492397804847,1.50722640552623,1.76383060703557,0.502666365318702,0,0.144599356919912,0,0.161766849947409,0,0,0,41.5748731756397,38.7476407604892,0.255457055208591,0,0,0,43.8886573456131,38.4300506367646,38.5758860986494,47.2802150922992,65.4631570765646,41.557608911912,45.2653123959044,0,0,0.252722758433675,6.52369753248069,4.42409506073193,12.4147136394075,14.7650946440386,10.2479276128286,22.0438257250302,25.8789714975397,35.231848434458,12.4177617954728,0.215567992932842,0,0,0,0,0,0.411564272815887,0.398068533636986,0,0,0,0,0.234526059981096,0,0,0,0.154267112887378,0,0,0,0,0,0.0810688095458557,0,0,0,39.74480027862,44.2489833230923,0.991256348951394,0,0.639864751605702,3.71578674976702,2.44848176511977,1.81515172161008,1.55664630691409,0.951128130562796,0.949058123089023,0.494096864172033,1.50801125280162,0.795825888164603,1.55971269695296,0.898819408654221,0.216138049874694,0.796565093017469,0.379335801906163,0.799739588268102,0,0.203651327845314,0.193952487167626,0.140271639780637,0,0,0,0,0,0,0,0,0.202860121388503,0,0.25462585178142,0,0,0,0,0,0.312037673114561,0.252578877947112,0.179397413521912,0,0,0,0.162964976442026,0,0,0,0,0,0.315270288212382,0,0.159454768657487,0,0.172684981865896,0,0,0,0,0,42.8670075267405,44.3060175318528,0,0.757412781613119,5.04813151066011,5.0757036758563,12.2791336707695,2.62865677747807,6.90675889655422,11.889214293131,6.07216052512342,11.1057226006299,15.4162233399144,15.4234231882467,0.141940085208269,0.712262414669021,0.162886959353576,0,33.1862845849907,0.971122544619926,2.72091201268276,6.97838795096823,5.02013217897314,3.99665692327106,1.55056975900933,3.99887102425256,4.63446591900138,16.1178746547266,32.6797686582496,30.9406629744561,10.8940673841212,5.221771726908,7.50280365939976,5.5727629108214,4.25616560741457,6.0645397984704,7.0756078858912,7.30715877875038,0,0.21183207086382,0.661585194164886,0,0.161464426695906,0.542816324353403,0.238744688006273,0.328281799490123,0,41.9061182543752,0,0.206386867963223,0,0,0,0,0,0,0,0.954670618015114,1.58167996790568,2.03319467126849,1.72808545314882,0.627264888043406,0.218362563746178,0.944050424693745,1.40510874733071,0.26175594198403,0.518459893167171,0,3.94585057078933,0.448549638131936,0,1.75006069509643,0.387479470433193,0.506868376472335,0.234714477291508,2.3436789271911,8.59846624290829,3.38217769156408,2.30424005006292,0,0.202725215290164,0,0.129920822977795,0.179026695667481,0,0,0,0,0,0,0,0,0,0.226730383615211,0.221985953374065,0,0,0,0,0,0.214368379079066,0,42.9211400388971,39.5879703396172,34.3737308063638,43.478855132953,48.6408589037156,39.2804826642644,49.9516650171536,41.8798718998525,44.407956080452,57.471394604452,14.5302286617847,16.7590446828433,16.2196925466427,8.50873509739029,7.1268475293514,6.06683577885047,3.33370091702423,7.41726206060019,5.45562656306086,6.31743029409494,4.05566879824384,6.03604292435444,5.43120743325318,5.6342134116285,4.70970845436029,4.28664322154766,6.2577536010222,4.62982129112892,7.00546031365621,6.62395140604788,5.82877729055206,4.08194354166476,5.48403236878838,4.65108533223451,5.92889096616583,5.92302255241735,6.21955107767427,4.73525480588117,4.6173398707593,3.92799590160417,6.76219603307793,5.71325997778268,4.91077251803627,6.50734732981057,3.66522560864169,16.4874981439044,4.91256377735358,4.51229213501426,2.29545998482612,0.661774257358546,1.15933917810211 | |||
|short_description=p1@Brsk2 | |||
}} |
Revision as of 13:39, 4 August 2015
Short description: | p1@Brsk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Brsk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000018971, ENSMUST00000078200, NM_029426, uc009kme.1, uc009kmf.1, uc009kmg.1, uc009kmh.1_5end |
EntrezGene: | 75770 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.79e-20 | 33 |
neuronal stem cell | 1.79e-20 | 33 |
neuroblast | 1.79e-20 | 33 |
electrically signaling cell | 1.79e-20 | 33 |
CNS neuron (sensu Vertebrata) | 1.22e-17 | 23 |
neuroblast (sensu Vertebrata) | 1.22e-17 | 23 |
ectodermal cell | 2.34e-17 | 44 |
neurectodermal cell | 2.34e-17 | 44 |
neural cell | 6.77e-17 | 43 |
electrically responsive cell | 5.19e-15 | 39 |
electrically active cell | 5.19e-15 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.19e-38 | 75 |
central nervous system | 1.02e-37 | 73 |
ectoderm-derived structure | 1.92e-35 | 95 |
ectoderm | 1.92e-35 | 95 |
presumptive ectoderm | 1.92e-35 | 95 |
neurectoderm | 4.42e-34 | 64 |
neural plate | 4.42e-34 | 64 |
presumptive neural plate | 4.42e-34 | 64 |
regional part of nervous system | 3.22e-30 | 54 |
ecto-epithelium | 5.13e-29 | 73 |
neural tube | 1.69e-28 | 52 |
neural rod | 1.69e-28 | 52 |
future spinal cord | 1.69e-28 | 52 |
neural keel | 1.69e-28 | 52 |
pre-chordal neural plate | 5.10e-27 | 49 |
brain | 3.94e-25 | 47 |
future brain | 3.94e-25 | 47 |
regional part of brain | 1.35e-24 | 46 |
anterior neural tube | 8.20e-23 | 40 |
regional part of forebrain | 4.70e-22 | 39 |
forebrain | 4.70e-22 | 39 |
future forebrain | 4.70e-22 | 39 |
gray matter | 3.09e-21 | 34 |
structure with developmental contribution from neural crest | 5.54e-21 | 92 |
brain grey matter | 2.51e-18 | 29 |
regional part of telencephalon | 2.51e-18 | 29 |
telencephalon | 2.51e-18 | 29 |
cerebral cortex | 5.97e-13 | 21 |
cerebral hemisphere | 5.97e-13 | 21 |
pallium | 5.97e-13 | 21 |
regional part of cerebral cortex | 8.35e-10 | 17 |
occipital lobe | 2.04e-08 | 10 |
visual cortex | 2.04e-08 | 10 |
neocortex | 2.04e-08 | 10 |