FFCP PHASE1:Mm9::chr7:29123446..29123480,-: Difference between revisions
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{{FFCP|EntrezGene=20924|HGNC=|UniProt=O55201|association_with_transcript=244bp_to_uc009fyi.1_5end|description=CAGE_peak_3_at_Supt5h_5end|id=chr7:29123446..29123480,-|ontology_enrichment_celltype=CL:0000540!3.49e-07!33;CL:0000047!3.49e-07!33;CL:0000031!3.49e-07!33;CL:0000404!3.49e-07!33;CL:0000393!4.40e-07!39;CL:0000211!4.40e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,2.93e-07,33;CL:0000047,2.93e-07,33;CL:0000031,2.93e-07,33;CL:0000404,2.93e-07,33;CL:0000393,3.66e-07,39;CL:0000211,3.66e-07,39;CL:0000221,9.08e-07,44;CL:0000133,9.08e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!7.71e-20!73;UBERON:0005743!7.71e-20!73;UBERON:0000073!4.31e-19!75;UBERON:0001016!4.31e-19!75;UBERON:0001049!1.99e-18!52;UBERON:0005068!1.99e-18!52;UBERON:0006241!1.99e-18!52;UBERON:0007135!1.99e-18!52;UBERON:0000955!1.68e-17!50;UBERON:0006238!1.68e-17!50;UBERON:0002616!4.50e-17!49;UBERON:0004121!1.15e-16!102;UBERON:0000924!1.15e-16!102;UBERON:0006601!1.15e-16!102;UBERON:0003080!1.99e-15!40;UBERON:0002780!6.84e-15!39;UBERON:0001890!6.84e-15!39;UBERON:0006240!6.84e-15!39;UBERON:0002020!1.96e-14!34;UBERON:0002346!3.06e-14!71;UBERON:0003075!3.06e-14!71;UBERON:0007284!3.06e-14!71;UBERON:0007811!5.03e-13!86;UBERON:0000153!2.07e-12!94;UBERON:0002791!3.79e-12!29;UBERON:0003528!3.79e-12!29;UBERON:0001893!3.79e-12!29;UBERON:0000033!3.96e-12!63;UBERON:0003056!1.71e-10!49;UBERON:0000956!3.12e-09!21;UBERON:0001869!3.12e-09!21;UBERON:0000203!3.12e-09!21;UBERON:0002619!3.67e-09!17;UBERON:0002021!1.49e-07!10;UBERON:0000411!1.49e-07!10;UBERON:0001950!1.49e-07!10;UBERON:0000064!9.93e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.74e-20,73;UBERON:0000073,8.23e-20,54;UBERON:0001016,2.52e-19,75;UBERON:0001049,1.06e-18,52;UBERON:0005068,1.06e-18,52;UBERON:0006241,1.06e-18,52;UBERON:0007135,1.06e-18,52;UBERON:0004121,2.75e-16,95;UBERON:0000924,2.75e-16,95;UBERON:0006601,2.75e-16,95;UBERON:0010371,3.20e-16,73;UBERON:0000955,4.92e-16,47;UBERON:0006238,4.92e-16,47;UBERON:0003080,8.36e-16,40;UBERON:0002616,1.32e-15,46;UBERON:0002780,2.97e-15,39;UBERON:0001890,2.97e-15,39;UBERON:0006240,2.97e-15,39;UBERON:0002020,8.77e-15,34;UBERON:0002346,3.98e-14,64;UBERON:0003075,3.98e-14,64;UBERON:0007284,3.98e-14,64;UBERON:0003528,1.95e-12,29;UBERON:0002791,1.95e-12,29;UBERON:0001893,1.95e-12,29;UBERON:0003056,1.82e-10,49;UBERON:0000956,1.93e-09,21;UBERON:0001869,1.93e-09,21;UBERON:0000203,1.93e-09,21;UBERON:0002619,2.28e-09,17;UBERON:0010314,1.02e-07,92;UBERON:0002021,1.02e-07,10;UBERON:0000411,1.02e-07,10;UBERON:0001950,1.02e-07,10|phase1_expression=3.52327463630547,2.44282785347553,4.09499315450582,1.51232105653415,0,1.34303417529512,0.934450562382103,0.516493293766305,2.39340827657833,1.63845168425395,0.513653904676515,0.239316476986009,0.342401459862411,0.611942816932982,0.999329285446988,0.809901069559304,1.39912375625629,0.630924330716475,0.959801035240171,0.84877930359606,5.86798702042381,2.28369187762036,2.87319768052829,1.75991665072747,1.14704640533585,1.14846392823004,1.29228598847722,1.72376986148711,0.380046838912748,0.252030129759931,0.886922042621219,1.90509202037889,1.23012957516914,15.8481681015439,0.288851619751275,0,0,0.837063261473815,0,0,1.76469446409304,0,0.971020706062307,2.51793635951155,1.72340783073175,2.9367480345869,6.25913075478431,1.09012578190223,3.73466510648602,2.91644848611425,1.1198913730029,0,1.51004345451963,0.725362142011344,0,1.02903774414379,2.57880095944881,1.54701627683233,2.02316460859598,2.11596391708813,0.633831403506179,2.03306719241479,0.889294796111139,0,0.988866362566974,0,2.09720077362883,6.14749288514487,1.55534418462716,2.02508907497536,2.52389953621658,7.42692559449889,5.52171352379034,2.44981598429908,2.39613677545591,3.67687514644008,7.70811166995721,11.6195477657521,8.44835932909339,2.63772575460388,3.7509933876988,2.08365348222704,5.862842979029,10.6924895906019,7.33431589328689,5.59794312399969,6.69146899755784,5.59198337475902,0.908714319998209,1.66257432234928,0.579728977403356,0,0,1.07940638327563,0,0,0.702222100658759,2.04516387093669,1.03914401841148,1.41335829804136,2.25349471642689,3.84979432242953,12.7402619853323,7.11066703153331,0.216491041011214,0.253359865475099,2.02209778005913,1.59857431606684,1.29468941823586,2.07818994690755,2.60227990149204,2.13125834818499,2.7673859670727,1.05505848386836,3.17489509266403,1.13099932196708,3.95511948374998,0.86759614151947,0,0.647067399789637,1.54589062922275,2.42437626567611,0,0.878342391034642,1.46612694769419,0.510914110417183,0.838705871541442,0,0.381210681219194,8.53806644607489,9.60751265919116,8.41884159156192,10.6032835317289,11.2514801225345,11.0127663616567,12.9793010454206,1.12023300235348,0.622034853050465,2.0217820674694,0.210441855886474,2.21204753036596,0.919608417733892,1.0803727788321,0.90422890701429,1.36072998302656,1.40925092313335,0.562210347358373,0.776110112217047,1.29340795759705,1.51284864134255,1.58356011747554,1.31517439456545,1.39023624612799,2.43776516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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20924 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O55201 | |||
|association_with_transcript=244bp_to_uc009fyi.1_5end | |||
|cluster_id=chr7:29123446..29123480,- | |||
|description=CAGE_peak_3_at_Supt5h_5end | |||
|id=chr7:29123446..29123480,- | |||
|ontology_enrichment_celltype=CL:0000540!3.49e-07!33;CL:0000047!3.49e-07!33;CL:0000031!3.49e-07!33;CL:0000404!3.49e-07!33;CL:0000393!4.40e-07!39;CL:0000211!4.40e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.93e-07,33;CL:0000047,2.93e-07,33;CL:0000031,2.93e-07,33;CL:0000404,2.93e-07,33;CL:0000393,3.66e-07,39;CL:0000211,3.66e-07,39;CL:0000221,9.08e-07,44;CL:0000133,9.08e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.71e-20!73;UBERON:0005743!7.71e-20!73;UBERON:0000073!4.31e-19!75;UBERON:0001016!4.31e-19!75;UBERON:0001049!1.99e-18!52;UBERON:0005068!1.99e-18!52;UBERON:0006241!1.99e-18!52;UBERON:0007135!1.99e-18!52;UBERON:0000955!1.68e-17!50;UBERON:0006238!1.68e-17!50;UBERON:0002616!4.50e-17!49;UBERON:0004121!1.15e-16!102;UBERON:0000924!1.15e-16!102;UBERON:0006601!1.15e-16!102;UBERON:0003080!1.99e-15!40;UBERON:0002780!6.84e-15!39;UBERON:0001890!6.84e-15!39;UBERON:0006240!6.84e-15!39;UBERON:0002020!1.96e-14!34;UBERON:0002346!3.06e-14!71;UBERON:0003075!3.06e-14!71;UBERON:0007284!3.06e-14!71;UBERON:0007811!5.03e-13!86;UBERON:0000153!2.07e-12!94;UBERON:0002791!3.79e-12!29;UBERON:0003528!3.79e-12!29;UBERON:0001893!3.79e-12!29;UBERON:0000033!3.96e-12!63;UBERON:0003056!1.71e-10!49;UBERON:0000956!3.12e-09!21;UBERON:0001869!3.12e-09!21;UBERON:0000203!3.12e-09!21;UBERON:0002619!3.67e-09!17;UBERON:0002021!1.49e-07!10;UBERON:0000411!1.49e-07!10;UBERON:0001950!1.49e-07!10;UBERON:0000064!9.93e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.74e-20,73;UBERON:0000073,8.23e-20,54;UBERON:0001016,2.52e-19,75;UBERON:0001049,1.06e-18,52;UBERON:0005068,1.06e-18,52;UBERON:0006241,1.06e-18,52;UBERON:0007135,1.06e-18,52;UBERON:0004121,2.75e-16,95;UBERON:0000924,2.75e-16,95;UBERON:0006601,2.75e-16,95;UBERON:0010371,3.20e-16,73;UBERON:0000955,4.92e-16,47;UBERON:0006238,4.92e-16,47;UBERON:0003080,8.36e-16,40;UBERON:0002616,1.32e-15,46;UBERON:0002780,2.97e-15,39;UBERON:0001890,2.97e-15,39;UBERON:0006240,2.97e-15,39;UBERON:0002020,8.77e-15,34;UBERON:0002346,3.98e-14,64;UBERON:0003075,3.98e-14,64;UBERON:0007284,3.98e-14,64;UBERON:0003528,1.95e-12,29;UBERON:0002791,1.95e-12,29;UBERON:0001893,1.95e-12,29;UBERON:0003056,1.82e-10,49;UBERON:0000956,1.93e-09,21;UBERON:0001869,1.93e-09,21;UBERON:0000203,1.93e-09,21;UBERON:0002619,2.28e-09,17;UBERON:0010314,1.02e-07,92;UBERON:0002021,1.02e-07,10;UBERON:0000411,1.02e-07,10;UBERON:0001950,1.02e-07,10 | |||
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| |||
|short_description=p3@Supt5h | |||
}} |
Revision as of 22:49, 4 August 2015
Short description: | p3@Supt5h |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Supt5h_5end |
Coexpression cluster: | NA |
Association with transcript: | 244bp_to_uc009fyi.1_5end |
EntrezGene: | 20924 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.93e-07 | 33 |
neuronal stem cell | 2.93e-07 | 33 |
neuroblast | 2.93e-07 | 33 |
electrically signaling cell | 2.93e-07 | 33 |
electrically responsive cell | 3.66e-07 | 39 |
electrically active cell | 3.66e-07 | 39 |
ectodermal cell | 9.08e-07 | 44 |
neurectodermal cell | 9.08e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.74e-20 | 73 |
regional part of nervous system | 8.23e-20 | 54 |
nervous system | 2.52e-19 | 75 |
neural tube | 1.06e-18 | 52 |
neural rod | 1.06e-18 | 52 |
future spinal cord | 1.06e-18 | 52 |
neural keel | 1.06e-18 | 52 |
ectoderm-derived structure | 2.75e-16 | 95 |
ectoderm | 2.75e-16 | 95 |
presumptive ectoderm | 2.75e-16 | 95 |
ecto-epithelium | 3.20e-16 | 73 |
brain | 4.92e-16 | 47 |
future brain | 4.92e-16 | 47 |
anterior neural tube | 8.36e-16 | 40 |
regional part of brain | 1.32e-15 | 46 |
regional part of forebrain | 2.97e-15 | 39 |
forebrain | 2.97e-15 | 39 |
future forebrain | 2.97e-15 | 39 |
gray matter | 8.77e-15 | 34 |
neurectoderm | 3.98e-14 | 64 |
neural plate | 3.98e-14 | 64 |
presumptive neural plate | 3.98e-14 | 64 |
brain grey matter | 1.95e-12 | 29 |
regional part of telencephalon | 1.95e-12 | 29 |
telencephalon | 1.95e-12 | 29 |
pre-chordal neural plate | 1.82e-10 | 49 |
cerebral cortex | 1.93e-09 | 21 |
cerebral hemisphere | 1.93e-09 | 21 |
pallium | 1.93e-09 | 21 |
regional part of cerebral cortex | 2.28e-09 | 17 |
structure with developmental contribution from neural crest | 1.02e-07 | 92 |
occipital lobe | 1.02e-07 | 10 |
visual cortex | 1.02e-07 | 10 |
neocortex | 1.02e-07 | 10 |