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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.32!207.25!HOPX;;chr11:61520075..61520136,+!p1@C11orf9!2.14!279.12!C11orf9;;chr1:201979703..201979721,+!p2@ELF3!2.13!134.68!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.08!117.93!ELF3;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.38!IRX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.70!78.15!FOXQ1;;chr20:22564895..22564910,-!p1@FOXA2!1.67!46.05!FOXA2;;chr20:22565185..22565223,-!p3@FOXA2!1.56!35.59!FOXA2;;chr6:34204921..34204939,+!p3@HMGA1!1.51!905.75!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.61!HIF3A;;chr18:19749386..19749404,+!p2@GATA6!1.46!39.08!GATA6;;chr20:42295745..42295765,+!p1@MYBL2!1.43!406.12!MYBL2;;chr14:38064429..38064486,-!p1@FOXA1!1.39!23.73!FOXA1;;chr19:17356189..17356221,-!p2@NR2F6!1.38!36.98!NR2F6;;chr1:209979467..209979494,-!p1@IRF6!1.38!25.82!IRF6;;chr18:19749541..19749557,+!p1@GATA6!1.36!67.69!GATA6;;chr12:7079780..7079791,-!p2@PHB2!1.27!91.41!PHB2;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.75!IRX2;;chr5:3595977..3595999,+!p1@IRX1!1.25!16.75!IRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.23!138.86!PPP1R13L;;chr1:935467..935484,-!p1@HES4!1.23!70.48!HES4;;chr3:52001448..52001478,-!p2@PCBP4!1.21!209.34!PCBP4;;chr1:23885981..23886002,-!p1@ID3!1.19!2477.19!ID3;;chr6:34204672..34204692,+!p1@HMGA1!1.19!1595.17!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr4:188916918..188916942,+!p1@ZFP42!1.17!13.96!ZFP42;;chr7:1577899..1577943,+!p3@MAFK!1.17!13.96!MAFK;;chr14:36989358..36989378,-!p3@NKX2-1!1.17!13.96!NKX2-1;;chr14:36989427..36989442,-!p1@NKX2-1!1.17!13.96!NKX2-1;;chr9:35732647..35732678,+!p2@CREB3!1.16!73.97!CREB3;;chr1:6479968..6479986,-!p1@HES2!1.15!13.26!HES2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.46!ID4;;chr19:45579725..45579743,-!p1@ZNF296!1.14!57.22!ZNF296;;chr20:30193083..30193098,+!p1@ID1!1.13!994.37!ID1;;chr20:32274179..32274213,-!p1@E2F1!1.12!80.25!E2F1;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.86!GRHL2;;chr18:19749504..19749515,+!p5@GATA6!1.11!11.86!GATA6;;chr17:41623692..41623715,-!p1@ETV4!1.09!48.15!ETV4;;chr14:35872962..35873025,-!p3@NFKBIA!1.09!28.61!NFKBIA;;chr18:19749517..19749531,+!p3@GATA6!1.09!20.24!GATA6;;chr17:46675558..46675577,-!p2@HOXB6!1.09!11.16!HOXB6;;chr19:49865646..49865718,-!p1@TEAD2!1.07!92.81!TEAD2;;chr1:8926441..8926473,-!p10@ENO1!1.07!16.05!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.66!DRAP1;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.47!TCF21;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.86!BNC1;;chr16:29818160..29818188,+!p6@MAZ!1.04!46.75!MAZ;;chr20:42295713..42295738,+!p2@MYBL2!1.03!57.92!MYBL2;;chr6:44233252..44233296,-!p1@NFKBIE!1.01!92.81!NFKBIE;;chr3:52001396..52001425,-!p4@PCBP4!1.01!16.75!PCBP4;;chr17:3571863..3571881,-!p1@TAX1BP3!1.00!655.24!TAX1BP3;;chr1:26496382..26496457,+!p1@ZNF593!1.00!554.75!ZNF593;;chr3:52001426..52001447,-!p3@PCBP4!1.00!25.82!PCBP4;;chr22:19748231..19748317,+!p1@TBX1!1.00!9.07!TBX1;;chr17:36105042..36105060,-!p1@HNF1B!1.00!9.07!HNF1B;;chr11:34642612..34642646,+!p1@EHF!1.00!9.07!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.00!9.07!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!1.00!9.07!OVOL2;;chr20:22565370..22565388,-!p2@FOXA2!1.00!9.07!FOXA2;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.35!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.97!23.03!HMGA2;;chr17:7493405..7493419,-!p1@SOX15!0.97!8.37!SOX15;;chr16:8962853..8962878,-!p1@CARHSP1!0.96!487.07!CARHSP1;;chr6:41514078..41514158,+!p1@FOXP4!0.96!76.06!FOXP4;;chr19:926055..926068,+!p2@ARID3A!0.93!16.75!ARID3A;;chr19:17356436..17356481,-!p3@NR2F6!0.93!13.26!NR2F6;;chr2:85981222..85981259,+!p2@ATOH8!0.93!12.56!ATOH8;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.86!HMGA2;;chr1:23886132..23886156,-!p2@ID3!0.92!8.37!ID3;;chr1:8938709..8938720,-!p3@ENO1!0.91!361.46!ENO1;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.47!HMGA2;;chr1:8926369..8926385,-!p12@ENO1!0.91!9.77!ENO1;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.98!HOXB5;;chr5:3595934..3595957,+!p2@IRX1!0.90!6.98!IRX1;;chr7:97840743..97840786,+!p1@BHLHA15!0.90!6.98!BHLHA15;;chr6:41514305..41514359,+!p2@FOXP4!0.89!59.31!FOXP4;;chr19:1592714..1592762,-!p1@MBD3!0.89!53.73!MBD3;;chr10:104155480..104155534,+!p2@NFKB2!0.88!45.36!NFKB2;;chr1:8483878..8483907,-!p4@RERE!0.88!26.52!RERE;;chr12:54785074..54785122,-!p2@ZNF385A!0.88!10.47!ZNF385A;;chr19:6424783..6424802,-!p2@KHSRP!0.87!136.77!KHSRP;;chr1:26496459..26496470,+!p2@ZNF593!0.87!12.56!ZNF593;;chrX:48900782..48900793,-!p3@TFE3!0.87!12.56!TFE3;;chr17:38465413..38465438,+!p5@RARA!0.87!10.47!RARA;;chr19:56632592..56632670,-!p1@ZNF787!0.86!149.33!ZNF787;;chr19:46367576..46367592,+!p1@FOXA3!0.86!6.28!FOXA3;;chr19:46800289..46800327,+!p2@HIF3A!0.86!6.28!HIF3A;;chr14:36988882..36988895,-!p13@NKX2-1!0.86!6.28!NKX2-1;;chr8:102504690..102504704,+!p3@GRHL2!0.86!6.28!GRHL2;;chr10:135122380..135122458,+!p1@ZNF511!0.85!195.38!ZNF511;;chr14:75894714..75894733,+!p1@JDP2!0.85!183.52!JDP2;;chr16:30537839..30537929,-!p1@ZNF768!0.85!40.47!ZNF768;;chr19:926001..926046,+!p1@ARID3A!0.85!22.33!ARID3A;;chr11:47270436..47270464,+!p2@NR1H3!0.85!13.26!NR1H3;;chr12:2986206..2986258,-!p2@FOXM1!0.84!37.68!FOXM1;;chr1:8938736..8938756,-!p1@ENO1!0.83!6731.69!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.83!34.19!DRAP1;;chr16:8962544..8962584,-!p2@CARHSP1!0.83!13.96!CARHSP1;;chr2:85980951..85981004,+!p1@ATOH8!0.83!9.77!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.37!IRX3;;chr9:35732514..35732530,+!p5@CREB3!0.83!8.37!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.82!24.42!TCF3;;chr12:80084737..80084763,-!p3@PAWR!0.82!22.33!PAWR;;chr1:8934931..8934947,-!p4@ENO1!0.82!19.54!ENO1;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.37!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!0.82!5.58!HNF1B;;chr17:45928443..45928473,-!p2@SP6!0.82!5.58!SP6;;chr2:122042770..122042785,-!p1@TFCP2L1!0.82!5.58!TFCP2L1;;chr12:3068634..3068656,+!p5@TEAD4!0.82!5.58!TEAD4;;chr10:104154246..104154347,+!p3@NFKB2!0.81!36.29!NFKB2;;chr1:154975258..154975330,+!p1@ZBTB7B!0.81!21.63!ZBTB7B;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.82!FOSL1;;chr10:104155455..104155479,+!p1@NFKB2!0.80!85.13!NFKB2;;chr19:17356697..17356762,-!p1@NR2F6!0.80!78.15!NR2F6;;chr17:61920280..61920343,-!p2@SMARCD2!0.80!55.82!SMARCD2;;chr12:3068544..3068597,+!p1@TEAD4!0.80!34.19!TEAD4;;chr17:46622205..46622218,-!p3@HOXB2!0.80!6.28!HOXB2;;chr19:1652575..1652621,-!p1@TCF3!0.79!217.71!TCF3;;chr19:45504688..45504782,+!p1@RELB!0.79!34.19!RELB;;chr2:70314240..70314256,+!p4@PCBP1!0.79!11.16!PCBP1;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.79!9.07!ELK4;;chr12:7079807..7079848,-!p1@PHB2!0.78!979.02!PHB2;;chr11:64073022..64073056,+!p1@ESRRA!0.78!65.59!ESRRA;;chr15:74833584..74833626,+!p1@ARID3B!0.78!12.56!ARID3B;;chr6:34204642..34204664,+!p2@HMGA1!0.77!725.02!HMGA1;;chr16:29817789..29817838,+!p2@MAZ!0.77!73.27!MAZ;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.28!FOXF1;;chr10:135122868..135122893,+!p3@ZNF511!0.77!4.88!ZNF511;;chr14:36989379..36989390,-!p8@NKX2-1!0.77!4.88!NKX2-1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.77!4.88!ZSCAN1;;chr2:85981107..85981120,+!p3@ATOH8!0.77!4.88!ATOH8;;chr4:149363494..149363543,-!p1@NR3C2!0.77!4.88!NR3C2;;chr17:17740287..17740307,-!p1@SREBF1!0.76!137.47!SREBF1;;chr19:56652643..56652683,+!p1@ZNF444!0.76!28.61!ZNF444;;chr8:145669791..145669834,-!p1@TONSL!0.76!14.65!TONSL;;chr22:42229210..42229229,+!p3@SREBF2!0.76!11.86!SREBF2;;chr10:48355030..48355090,+!p1@ZNF488!0.76!6.28!ZNF488;;chr11:615942..615957,-!p1@IRF7!0.75!48.15!IRF7;;chr20:32274150..32274166,-!p2@E2F1!0.75!9.07!E2F1;;chr9:35732592..35732640,+!p1@CREB3!0.74!65.59!CREB3;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.74!50.24!GLIS2;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.35!TBX2;;chr19:3366625..3366629,+!p4@NFIC!0.74!6.98!NFIC;;chr12:125002739..125002756,-!p6@NCOR2!0.74!6.98!NCOR2;;chr14:75988771..75988826,+!p1@BATF!0.74!6.28!BATF;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.73!120.72!MEF2B;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.05!TCF19;;chr12:66218598..66218645,+!p2@HMGA2!0.73!22.33!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.73!9.07!HMGA2;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr19:19303731..19303783,+!p1@RFXANK!0.72!112.35!RFXANK;;chr17:38498402..38498445,+!p3@RARA!0.72!16.75!RARA;;chr2:169312600..169312606,+!p2@CERS6!0.72!6.98!CERS6;;chr11:62369806..62369837,-!p8@MTA2!0.72!5.58!MTA2;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.58!DRAP1;;chr20:48807351..48807384,+!p1@CEBPB!0.71!484.27!CEBPB;;chr19:1863568..1863586,-!p1@KLF16!0.71!153.52!KLF16;;chr6:35464817..35464894,-!p1@TEAD3!0.71!71.87!TEAD3;;chr12:132628963..132629027,+!p1@NOC4L!0.71!67.69!NOC4L;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.56!EPAS1;;chr17:41623009..41623053,-!p4@ETV4!0.71!6.98!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.71!6.28!IRX3;;chr20:6748325..6748352,+!p1@BMP2!0.71!6.28!BMP2;;chr19:58545369..58545404,+!p2@ZSCAN1!0.71!4.19!ZSCAN1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.71!4.19!ZBTB7B;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.19!FOXA1;;chr3:69915385..69915438,+!p3@MITF!0.71!4.19!MITF;;chr16:29817841..29817865,+!p1@MAZ!0.70!96.99!MAZ;;chr16:29817665..29817719,+!p3@MAZ!0.70!69.78!MAZ;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.22!SREBF2;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.15!KLF5;;chr22:21356378..21356422,-!p2@THAP7!0.70!39.77!THAP7;;chr17:17740330..17740349,-!p3@SREBF1!0.70!30.01!SREBF1;;chr2:242576641..242576731,-!p2@THAP4!0.70!17.45!THAP4;;chr12:3069037..3069119,+!p2@TEAD4!0.70!15.35!TEAD4;;chr1:935398..935465,-!p2@HES4!0.70!9.07!HES4;;chrX:129244655..129244697,-!p4@ELF4!0.70!7.68!ELF4;;chr16:29818199..29818216,+!p11@MAZ!0.70!6.98!MAZ;;chr19:13213662..13213686,-!p1@LYL1!0.70!6.28!LYL1;;chr21:36260773..36260804,-!p7@RUNX1!0.70!5.58!RUNX1;;chr11:65686855..65686946,+!p1@DRAP1!0.69!338.43!DRAP1;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.31!HMGA1;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.54!NR2F1;;chr17:41623667..41623682,-!p8@ETV4!0.69!4.19!ETV4;;chr19:1863591..1863611,-!p2@KLF16!0.68!41.17!KLF16;;chr7:1570322..1570360,+!p1@MAFK!0.68!36.29!MAFK;;chr8:49833948..49833973,-!p2@SNAI2!0.68!27.21!SN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2901..46602926,+!p7@EPAS1!0.26!1.40!EPAS1;;chr3:71632811..71632825,-!p19@FOXP1!0.26!1.40!FOXP1;;chr16:31085961..31086009,+!p2@ZNF646!0.26!1.40!ZNF646;;chr17:36873780..36873800,+!p5@MLLT6!0.26!1.40!MLLT6;;chr17:59477275..59477286,+!p3@TBX2!0.26!1.40!TBX2;;chr18:3449330..3449344,+!p10@TGIF1!0.26!1.40!TGIF1;;chr5:43067636..43067674,+!p6@ZNF131!0.26!1.40!ZNF131;;chr6:157099387..157099403,+!p8@ARID1B!0.26!1.40!ARID1B;;chr6:21597283..21597312,+!p7@SOX4!0.26!1.40!SOX4;;chr20:33413523..33413534,-!p3@NCOA6!0.26!1.40!NCOA6;;chr11:65687243..65687276,+!p8@DRAP1!0.26!1.40!DRAP1;;chr11:67007611..67007622,+!p6@KDM2A!0.26!1.40!KDM2A;;chr12:133613902..133613924,+!p4@ZNF84!0.26!1.40!ZNF84;;chr3:101568349..101568365,+!p1@NFKBIZ!0.25!84.43!NFKBIZ;;chr20:44718538..44718612,-!p1@NCOA5!0.25!43.96!NCOA5;;chr19:6279932..6280000,-!p1@MLLT1!0.25!40.47!MLLT1;;chr20:50808290..50808328,-!p1@ZFP64!0.25!18.14!ZFP64;;chr16:2273645..2273671,+!p2@E4F1!0.25!7.68!E4F1;;chr7:149194843..149194922,-!p2@ZNF746!0.25!7.68!ZNF746;;chr12:96588279..96588299,+!p4@ELK3!0.25!6.98!ELK3;;chr3:44596679..44596726,+!p1@ZNF167!0.25!6.28!ZNF167;;chr12:54019757..54019804,-!p2@ATF7!0.25!5.58!ATF7;;chr18:5296001..5296045,-!p1@ZFP161!0.25!5.58!ZFP161;;chr7:150945754..150945789,-!p2@SMARCD3!0.25!4.19!SMARCD3;;chr17:1959369..1959388,+!p2@HIC1!0.25!3.49!HIC1;;chr17:61920246..61920272,-!p4@SMARCD2!0.25!2.79!SMARCD2;;chr19:57106624..57106644,+!p2@ZNF71!0.25!2.79!ZNF71;;chr20:48807091..48807123,+!p7@CEBPB!0.25!2.79!CEBPB;;chr1:40367530..40367597,-!p1@MYCL1!0.25!2.09!MYCL1;;chr16:73092791..73092831,-!p4@ZFHX3!0.25!2.09!ZFHX3;;chr12:53574398..53574412,+!p3@ZNF740!0.25!2.09!ZNF740;;chr12:10865870..10865888,-!p6@CSDA!0.25!1.40!CSDA;;chr19:50435736..50435781,+!p3@ATF5!0.25!1.40!ATF5;;chr8:86089341..86089362,+!p5@E2F5!0.25!1.40!E2F5;;chr15:85291372..85291405,+!p3@ZNF592!0.25!1.40!ZNF592;;chr17:46127997..46128015,+!p5@NFE2L1!0.25!1.40!NFE2L1;;chr22:21356345..21356367,-!p3@THAP7!0.25!1.40!THAP7;;chr3:71355163..71355209,-!p5@FOXP1!0.25!1.40!FOXP1;;chr2:220094514..220094599,+!p1@ANKZF1!0.24!45.36!ANKZF1;;chr2:28616337..28616355,+!p2@FOSL2!0.24!27.21!FOSL2;;chr1:41157266..41157314,+!p3@NFYC!0.24!12.56!NFYC;;chr11:62368696..62368759,-!p4@MTA2!0.24!9.07!MTA2;;chr19:50169013..50169062,-!p2@IRF3!0.24!8.37!IRF3;;chr19:58694421..58694485,+!p1@ZNF274!0.24!7.68!ZNF274;;chr12:48298785..48298828,-!p1@VDR!0.24!7.68!VDR;;chr2:60780753..60780800,-!p1@BCL11A!0.24!6.98!BCL11A;;chr19:11998584..11998649,+!p1@ZNF69!0.24!6.28!ZNF69;;chr1:149871114..149871134,+!p3@BOLA1!0.24!5.58!BOLA1;;chr19:58220517..58220583,-!p1@ZNF154!0.24!4.19!ZNF154;;chr3:150126706..150126754,+!p5@TSC22D2!0.24!4.19!TSC22D2;;chr3:5021191..5021202,+!p3@BHLHE40!0.24!3.49!BHLHE40;;chr7:6676986..6677005,+!p2@ENST00000427912!0.24!3.49!ZNF316;;chr8:86089369..86089408,+!p1@E2F5!0.24!3.49!E2F5;;chr9:117150254..117150271,-!p1@AKNA!0.24!3.49!AKNA;;chr19:55987998..55988026,+!p2@ZNF628!0.24!2.09!ZNF628;;chr17:42297000..42297022,-!p15@UBTF!0.24!1.40!UBTF;;chr17:42297226..42297246,-!p14@UBTF!0.24!1.40!UBTF;;chr9:99180662..99180690,-!p2@ZNF367!0.24!1.40!ZNF367;;chr7:137563905..137563916,-!p11@CREB3L2!0.24!1.40!CREB3L2;;chr8:103665947..103665981,-!p3@KLF10!0.24!1.40!KLF10;;chr4:146859887..146859921,-!p3@ZNF827!0.24!1.40!ZNF827;;chr5:149380256..149380343,+!p1@HMGXB3!0.23!45.36!HMGXB3;;chr17:79885576..79885624,-!p1@MAFG!0.23!16.75!MAFG;;chr12:96588219..96588263,+!p2@ELK3!0.23!10.47!ELK3;;chr6:41703296..41703367,-!p1@TFEB!0.23!6.98!TFEB;;chr19:46272462..46272562,-!p1@SIX5!0.23!5.58!SIX5;;
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.32!207.25!HOPX;;chr11:61520075..61520136,+!p1@C11orf9!2.14!279.12!C11orf9;;chr1:201979703..201979721,+!p2@ELF3!2.13!134.68!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.08!117.93!ELF3;;chr5:2751762..2751784,-!p1@IRX2!1.84!68.38!IRX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.70!78.15!FOXQ1;;chr20:22564895..22564910,-!p1@FOXA2!1.67!46.05!FOXA2;;chr20:22565185..22565223,-!p3@FOXA2!1.56!35.59!FOXA2;;chr6:34204921..34204939,+!p3@HMGA1!1.51!905.75!HMGA1;;chr19:46801639..46801699,+!p1@HIF3A!1.47!28.61!HIF3A;;chr18:19749386..19749404,+!p2@GATA6!1.46!39.08!GATA6;;chr20:42295745..42295765,+!p1@MYBL2!1.43!406.12!MYBL2;;chr14:38064429..38064486,-!p1@FOXA1!1.39!23.73!FOXA1;;chr19:17356189..17356221,-!p2@NR2F6!1.38!36.98!NR2F6;;chr1:209979467..209979494,-!p1@IRF6!1.38!25.82!IRF6;;chr18:19749541..19749557,+!p1@GATA6!1.36!67.69!GATA6;;chr12:7079780..7079791,-!p2@PHB2!1.27!91.41!PHB2;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.75!IRX2;;chr5:3595977..3595999,+!p1@IRX1!1.25!16.75!IRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.23!138.86!PPP1R13L;;chr1:935467..935484,-!p1@HES4!1.23!70.48!HES4;;chr3:52001448..52001478,-!p2@PCBP4!1.21!209.34!PCBP4;;chr1:23885981..23886002,-!p1@ID3!1.19!2477.19!ID3;;chr6:34204672..34204692,+!p1@HMGA1!1.19!1595.17!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.19!14.65!SOX11;;chr4:188916918..188916942,+!p1@ZFP42!1.17!13.96!ZFP42;;chr7:1577899..1577943,+!p3@MAFK!1.17!13.96!MAFK;;chr14:36989358..36989378,-!p3@NKX2-1!1.17!13.96!NKX2-1;;chr14:36989427..36989442,-!p1@NKX2-1!1.17!13.96!NKX2-1;;chr9:35732647..35732678,+!p2@CREB3!1.16!73.97!CREB3;;chr1:6479968..6479986,-!p1@HES2!1.15!13.26!HES2;;chr6:19837592..19837621,+!p1@ID4!1.14!77.46!ID4;;chr19:45579725..45579743,-!p1@ZNF296!1.14!57.22!ZNF296;;chr20:30193083..30193098,+!p1@ID1!1.13!994.37!ID1;;chr20:32274179..32274213,-!p1@E2F1!1.12!80.25!E2F1;;chr8:102504651..102504683,+!p1@GRHL2!1.11!11.86!GRHL2;;chr18:19749504..19749515,+!p5@GATA6!1.11!11.86!GATA6;;chr17:41623692..41623715,-!p1@ETV4!1.09!48.15!ETV4;;chr14:35872962..35873025,-!p3@NFKBIA!1.09!28.61!NFKBIA;;chr18:19749517..19749531,+!p3@GATA6!1.09!20.24!GATA6;;chr17:46675558..46675577,-!p2@HOXB6!1.09!11.16!HOXB6;;chr19:49865646..49865718,-!p1@TEAD2!1.07!92.81!TEAD2;;chr1:8926441..8926473,-!p10@ENO1!1.07!16.05!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.66!DRAP1;;chr6:134210243..134210257,+!p1@TCF21!1.06!10.47!TCF21;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.86!BNC1;;chr16:29818160..29818188,+!p6@MAZ!1.04!46.75!MAZ;;chr20:42295713..42295738,+!p2@MYBL2!1.03!57.92!MYBL2;;chr6:44233252..44233296,-!p1@NFKBIE!1.01!92.81!NFKBIE;;chr3:52001396..52001425,-!p4@PCBP4!1.01!16.75!PCBP4;;chr17:3571863..3571881,-!p1@TAX1BP3!1.00!655.24!TAX1BP3;;chr1:26496382..26496457,+!p1@ZNF593!1.00!554.75!ZNF593;;chr3:52001426..52001447,-!p3@PCBP4!1.00!25.82!PCBP4;;chr22:19748231..19748317,+!p1@TBX1!1.00!9.07!TBX1;;chr17:36105042..36105060,-!p1@HNF1B!1.00!9.07!HNF1B;;chr11:34642612..34642646,+!p1@EHF!1.00!9.07!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.00!9.07!IRF6;;chr20:18038521..18038571,-!p1@OVOL2!1.00!9.07!OVOL2;;chr20:22565370..22565388,-!p2@FOXA2!1.00!9.07!FOXA2;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.35!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.97!23.03!HMGA2;;chr17:7493405..7493419,-!p1@SOX15!0.97!8.37!SOX15;;chr16:8962853..8962878,-!p1@CARHSP1!0.96!487.07!CARHSP1;;chr6:41514078..41514158,+!p1@FOXP4!0.96!76.06!FOXP4;;chr19:926055..926068,+!p2@ARID3A!0.93!16.75!ARID3A;;chr19:17356436..17356481,-!p3@NR2F6!0.93!13.26!NR2F6;;chr2:85981222..85981259,+!p2@ATOH8!0.93!12.56!ATOH8;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.86!HMGA2;;chr1:23886132..23886156,-!p2@ID3!0.92!8.37!ID3;;chr1:8938709..8938720,-!p3@ENO1!0.91!361.46!ENO1;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.47!HMGA2;;chr1:8926369..8926385,-!p12@ENO1!0.91!9.77!ENO1;;chr17:46671108..46671147,-!p1@HOXB5!0.90!6.98!HOXB5;;chr5:3595934..3595957,+!p2@IRX1!0.90!6.98!IRX1;;chr7:97840743..97840786,+!p1@BHLHA15!0.90!6.98!BHLHA15;;chr6:41514305..41514359,+!p2@FOXP4!0.89!59.31!FOXP4;;chr19:1592714..1592762,-!p1@MBD3!0.89!53.73!MBD3;;chr10:104155480..104155534,+!p2@NFKB2!0.88!45.36!NFKB2;;chr1:8483878..8483907,-!p4@RERE!0.88!26.52!RERE;;chr12:54785074..54785122,-!p2@ZNF385A!0.88!10.47!ZNF385A;;chr19:6424783..6424802,-!p2@KHSRP!0.87!136.77!KHSRP;;chr1:26496459..26496470,+!p2@ZNF593!0.87!12.56!ZNF593;;chrX:48900782..48900793,-!p3@TFE3!0.87!12.56!TFE3;;chr17:38465413..38465438,+!p5@RARA!0.87!10.47!RARA;;chr19:56632592..56632670,-!p1@ZNF787!0.86!149.33!ZNF787;;chr19:46367576..46367592,+!p1@FOXA3!0.86!6.28!FOXA3;;chr19:46800289..46800327,+!p2@HIF3A!0.86!6.28!HIF3A;;chr14:36988882..36988895,-!p13@NKX2-1!0.86!6.28!NKX2-1;;chr8:102504690..102504704,+!p3@GRHL2!0.86!6.28!GRHL2;;chr10:135122380..135122458,+!p1@ZNF511!0.85!195.38!ZNF511;;chr14:75894714..75894733,+!p1@JDP2!0.85!183.52!JDP2;;chr16:30537839..30537929,-!p1@ZNF768!0.85!40.47!ZNF768;;chr19:926001..926046,+!p1@ARID3A!0.85!22.33!ARID3A;;chr11:47270436..47270464,+!p2@NR1H3!0.85!13.26!NR1H3;;chr12:2986206..2986258,-!p2@FOXM1!0.84!37.68!FOXM1;;chr1:8938736..8938756,-!p1@ENO1!0.83!6731.69!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.83!34.19!DRAP1;;chr16:8962544..8962584,-!p2@CARHSP1!0.83!13.96!CARHSP1;;chr2:85980951..85981004,+!p1@ATOH8!0.83!9.77!ATOH8;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.37!IRX3;;chr9:35732514..35732530,+!p5@CREB3!0.83!8.37!CREB3;;chr19:1652555..1652568,-!p2@TCF3!0.82!24.42!TCF3;;chr12:80084737..80084763,-!p3@PAWR!0.82!22.33!PAWR;;chr1:8934931..8934947,-!p4@ENO1!0.82!19.54!ENO1;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.37!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!0.82!5.58!HNF1B;;chr17:45928443..45928473,-!p2@SP6!0.82!5.58!SP6;;chr2:122042770..122042785,-!p1@TFCP2L1!0.82!5.58!TFCP2L1;;chr12:3068634..3068656,+!p5@TEAD4!0.82!5.58!TEAD4;;chr10:104154246..104154347,+!p3@NFKB2!0.81!36.29!NFKB2;;chr1:154975258..154975330,+!p1@ZBTB7B!0.81!21.63!ZBTB7B;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.82!FOSL1;;chr10:104155455..104155479,+!p1@NFKB2!0.80!85.13!NFKB2;;chr19:17356697..17356762,-!p1@NR2F6!0.80!78.15!NR2F6;;chr17:61920280..61920343,-!p2@SMARCD2!0.80!55.82!SMARCD2;;chr12:3068544..3068597,+!p1@TEAD4!0.80!34.19!TEAD4;;chr17:46622205..46622218,-!p3@HOXB2!0.80!6.28!HOXB2;;chr19:1652575..1652621,-!p1@TCF3!0.79!217.71!TCF3;;chr19:45504688..45504782,+!p1@RELB!0.79!34.19!RELB;;chr2:70314240..70314256,+!p4@PCBP1!0.79!11.16!PCBP1;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.79!9.07!ELK4;;chr12:7079807..7079848,-!p1@PHB2!0.78!979.02!PHB2;;chr11:64073022..64073056,+!p1@ESRRA!0.78!65.59!ESRRA;;chr15:74833584..74833626,+!p1@ARID3B!0.78!12.56!ARID3B;;chr6:34204642..34204664,+!p2@HMGA1!0.77!725.02!HMGA1;;chr16:29817789..29817838,+!p2@MAZ!0.77!73.27!MAZ;;chr16:86544113..86544145,+!p1@FOXF1!0.77!6.28!FOXF1;;chr10:135122868..135122893,+!p3@ZNF511!0.77!4.88!ZNF511;;chr14:36989379..36989390,-!p8@NKX2-1!0.77!4.88!NKX2-1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.77!4.88!ZSCAN1;;chr2:85981107..85981120,+!p3@ATOH8!0.77!4.88!ATOH8;;chr4:149363494..149363543,-!p1@NR3C2!0.77!4.88!NR3C2;;chr17:17740287..17740307,-!p1@SREBF1!0.76!137.47!SREBF1;;chr19:56652643..56652683,+!p1@ZNF444!0.76!28.61!ZNF444;;chr8:145669791..145669834,-!p1@TONSL!0.76!14.65!TONSL;;chr22:42229210..42229229,+!p3@SREBF2!0.76!11.86!SREBF2;;chr10:48355030..48355090,+!p1@ZNF488!0.76!6.28!ZNF488;;chr11:615942..615957,-!p1@IRF7!0.75!48.15!IRF7;;chr20:32274150..32274166,-!p2@E2F1!0.75!9.07!E2F1;;chr9:35732592..35732640,+!p1@CREB3!0.74!65.59!CREB3;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.74!50.24!GLIS2;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.35!TBX2;;chr19:3366625..3366629,+!p4@NFIC!0.74!6.98!NFIC;;chr12:125002739..125002756,-!p6@NCOR2!0.74!6.98!NCOR2;;chr14:75988771..75988826,+!p1@BATF!0.74!6.28!BATF;;chr19:19302931..19302974,-!p1@MEF2BNB-MEF2B,p1@MEF2BNB,p1@MEF2B!0.73!120.72!MEF2B;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.05!TCF19;;chr12:66218598..66218645,+!p2@HMGA2!0.73!22.33!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.73!9.07!HMGA2;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr19:19303731..19303783,+!p1@RFXANK!0.72!112.35!RFXANK;;chr17:38498402..38498445,+!p3@RARA!0.72!16.75!RARA;;chr2:169312600..169312606,+!p2@CERS6!0.72!6.98!CERS6;;chr11:62369806..62369837,-!p8@MTA2!0.72!5.58!MTA2;;chr11:65687222..65687240,+!p7@DRAP1!0.72!5.58!DRAP1;;chr20:48807351..48807384,+!p1@CEBPB!0.71!484.27!CEBPB;;chr19:1863568..1863586,-!p1@KLF16!0.71!153.52!KLF16;;chr6:35464817..35464894,-!p1@TEAD3!0.71!71.87!TEAD3;;chr12:132628963..132629027,+!p1@NOC4L!0.71!67.69!NOC4L;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.56!EPAS1;;chr17:41623009..41623053,-!p4@ETV4!0.71!6.98!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.71!6.28!IRX3;;chr20:6748325..6748352,+!p1@BMP2!0.71!6.28!BMP2;;chr19:58545369..58545404,+!p2@ZSCAN1!0.71!4.19!ZSCAN1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.71!4.19!ZBTB7B;;chr14:38064590..38064606,-!p2@FOXA1!0.71!4.19!FOXA1;;chr3:69915385..69915438,+!p3@MITF!0.71!4.19!MITF;;chr16:29817841..29817865,+!p1@MAZ!0.70!96.99!MAZ;;chr16:29817665..29817719,+!p3@MAZ!0.70!69.78!MAZ;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.22!SREBF2;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.15!KLF5;;chr22:21356378..21356422,-!p2@THAP7!0.70!39.77!THAP7;;chr17:17740330..17740349,-!p3@SREBF1!0.70!30.01!SREBF1;;chr2:242576641..242576731,-!p2@THAP4!0.70!17.45!THAP4;;chr12:3069037..3069119,+!p2@TEAD4!0.70!15.35!TEAD4;;chr1:935398..935465,-!p2@HES4!0.70!9.07!HES4;;chrX:129244655..129244697,-!p4@ELF4!0.70!7.68!ELF4;;chr16:29818199..29818216,+!p11@MAZ!0.70!6.98!MAZ;;chr19:13213662..13213686,-!p1@LYL1!0.70!6.28!LYL1;;chr21:36260773..36260804,-!p7@RUNX1!0.70!5.58!RUNX1;;chr11:65686855..65686946,+!p1@DRAP1!0.69!338.43!DRAP1;;chr6:34204973..34204990,+!p4@HMGA1!0.69!59.31!HMGA1;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.54!NR2F1;;chr17:41623667..41623682,-!p8@ETV4!0.69!4.19!ETV4;;chr19:1863591..1863611,-!p2@KLF16!0.68!41.17!KLF16;;chr7:1570322..1570360,+!p1@MAFK!0.68!36.29!MAFK;;chr8:49833948..49833973,-!p2@SNAI2!0.68!27.21!SN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Line 45: Line 45:
|is_obsolete=
|is_obsolete=
|library_id=CNhs12084
|library_id=CNhs12084
|library_id_phase_based=1:CNhs12084
|library_id_phase_based=2:CNhs12084
|name=Alveolar Epithelial Cells, donor2
|name="Alveolar Epithelial Cells, donor2"
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12084,LSID838,release011,COMPLETED
|profile_hcage="CNhs12084,LSID838,release011,COMPLETED"
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq="SRhi10002,,,"
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Line 72: Line 72:
|sample_cell_line=
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_lot=N/A
|sample_cell_type=epithelial cell of lung, small airway
|sample_cell_type="epithelial cell of lung, small airway"
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_company=Sciencell/3H

Revision as of 18:50, 27 November 2014


Name:"Alveolar Epithelial Cells, donor2"
Species:Human (Homo sapiens)
Library ID:CNhs12084
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexNA
ageNA
cell type"epithelial cell of lung, small airway"
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:4978
catalog numberSC3205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005923
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12084 CAGE DRX008105 DRR008977
Accession ID Hg19

Library idBAMCTSS
CNhs12084 DRZ000402 DRZ001787
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>dataNo results for this sample

Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: "CNhs12084This sample isn't target for the analysis

FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: "CNhs12084This sample isn't target for the analysis

de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: "CNhs12084


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)