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|full_id=C706_Adipocyte_Preadipocyte_tenocyte_leiomyoma_chorionic_Olfactory_Hair
|full_id=C706_Adipocyte_Preadipocyte_tenocyte_leiomyoma_chorionic_Olfactory_Hair
|id=C706
|id=C706
|ontology_enrichment_celltype=CL:0000055!7.33e-30!180;CL:0000057!1.76e-18!75;CL:0000222!2.87e-13!119;CL:0000183!2.77e-10!59;CL:0000680!1.24e-09!57;CL:0000056!1.24e-09!57;CL:0000355!1.24e-09!57;CL:0000192!3.49e-09!42;CL:0000514!3.49e-09!42;CL:0000187!5.81e-09!54;CL:0000499!4.46e-08!27;CL:0000393!1.19e-07!60;CL:0000211!1.19e-07!60;CL:0002334!6.77e-07!12
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000468!2.42e-15!659;UBERON:0000467!7.59e-13!625;UBERON:0000480!1.14e-12!626;UBERON:0005256!1.03e-10!143;UBERON:0000914!1.37e-10!83;UBERON:0002329!1.37e-10!83;UBERON:0003077!1.37e-10!83;UBERON:0003059!1.37e-10!83;UBERON:0007282!1.37e-10!83;UBERON:0009618!1.37e-10!83;UBERON:0007285!1.37e-10!83;UBERON:0004290!4.30e-10!70;UBERON:0002385!3.17e-09!63;UBERON:0001015!3.17e-09!63;UBERON:0000383!3.17e-09!63;UBERON:0000475!3.38e-09!365;UBERON:0001134!3.52e-09!61;UBERON:0002036!3.52e-09!61;UBERON:0003082!3.52e-09!61;UBERON:0002049!1.26e-08!79;UBERON:0007798!1.26e-08!79;UBERON:0004872!1.43e-08!84;UBERON:0000926!2.44e-08!448;UBERON:0004120!2.44e-08!448;UBERON:0006603!2.44e-08!448;UBERON:0002050!6.95e-08!605;UBERON:0005423!6.95e-08!605;UBERON:0000923!9.76e-08!604;UBERON:0005291!9.76e-08!604;UBERON:0006598!9.76e-08!604;UBERON:0002532!9.76e-08!604;UBERON:0000062!1.12e-07!511;UBERON:0000055!1.26e-07!69;UBERON:0000477!1.70e-07!286;UBERON:0000486!1.83e-07!82;UBERON:0000922!2.63e-07!612;UBERON:0003914!4.04e-07!118;UBERON:0002100!5.31e-07!216;UBERON:0001981!9.19e-07!60;UBERON:0007500!9.19e-07!60;UBERON:0004537!9.19e-07!60;UBERON:0006965!9.19e-07!60
}}
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Revision as of 14:56, 21 May 2012


Full id: C706_Adipocyte_Preadipocyte_tenocyte_leiomyoma_chorionic_Olfactory_Hair



Phase1 CAGE Peaks

Hg19::chr17:76850062..76850090,-p@chr17:76850062..76850090
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Hg19::chr17:76850123..76850137,-p@chr17:76850123..76850137
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Hg19::chr17:76850216..76850253,-p8@TIMP2
Hg19::chr17:76850381..76850397,-p3@TIMP2
Hg19::chr17:76850613..76850641,-p5@TIMP2
Hg19::chr17:76850688..76850705,-p9@TIMP2
Hg19::chr17:76851239..76851259,-p4@TIMP2
Hg19::chr17:76851266..76851308,-p6@TIMP2
Hg19::chr17:76851469..76851493,-p@chr17:76851469..76851493
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Hg19::chr17:76851547..76851576,-p@chr17:76851547..76851576
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Hg19::chr17:76851684..76851703,-p@chr17:76851684..76851703
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Hg19::chr17:76853697..76853720,-p@chr17:76853697..76853720
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
multi-cellular organism2.42e-15659
anatomical system7.59e-13625
anatomical group1.14e-12626
trunk mesenchyme1.03e-10143
somite1.37e-1083
paraxial mesoderm1.37e-1083
presomitic mesoderm1.37e-1083
presumptive segmental plate1.37e-1083
trunk paraxial mesoderm1.37e-1083
presumptive paraxial mesoderm1.37e-1083
dermomyotome4.30e-1070
muscle tissue3.17e-0963
musculature3.17e-0963
musculature of body3.17e-0963
organism subdivision3.38e-09365
skeletal muscle tissue3.52e-0961
striated muscle tissue3.52e-0961
myotome3.52e-0961
vasculature1.26e-0879
vascular system1.26e-0879
splanchnic layer of lateral plate mesoderm1.43e-0884
mesoderm2.44e-08448
mesoderm-derived structure2.44e-08448
presumptive mesoderm2.44e-08448
embryonic structure6.95e-08605
developing anatomical structure6.95e-08605
germ layer9.76e-08604
embryonic tissue9.76e-08604
presumptive structure9.76e-08604
epiblast (generic)9.76e-08604
organ1.12e-07511
vessel1.26e-0769
anatomical cluster1.70e-07286
multilaminar epithelium1.83e-0782
embryo2.63e-07612
epithelial tube4.04e-07118
trunk5.31e-07216
blood vessel9.19e-0760
epithelial tube open at both ends9.19e-0760
blood vasculature9.19e-0760
vascular cord9.19e-0760


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.