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MCL coexpression mm9:1940: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!3.24e-07!23;CL:0000337!3.24e-07!23
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!4.48e-27!54;UBERON:0010371!4.01e-26!73;UBERON:0004121!3.65e-25!95;UBERON:0000924!3.65e-25!95;UBERON:0006601!3.65e-25!95;UBERON:0001049!4.19e-25!52;UBERON:0005068!4.19e-25!52;UBERON:0006241!4.19e-25!52;UBERON:0007135!4.19e-25!52;UBERON:0000955!7.33e-24!47;UBERON:0006238!7.33e-24!47;UBERON:0002346!8.61e-24!64;UBERON:0003075!8.61e-24!64;UBERON:0007284!8.61e-24!64;UBERON:0001016!3.24e-23!75;UBERON:0002616!1.02e-22!46;UBERON:0001017!3.35e-22!73;UBERON:0003056!1.54e-20!49;UBERON:0003080!3.78e-20!40;UBERON:0002780!2.24e-19!39;UBERON:0001890!2.24e-19!39;UBERON:0006240!2.24e-19!39;UBERON:0002020!4.95e-15!34;UBERON:0010314!2.00e-14!92;UBERON:0003528!1.58e-13!29;UBERON:0002791!1.58e-13!29;UBERON:0001893!1.58e-13!29;UBERON:0002021!1.16e-11!10;UBERON:0000411!1.16e-11!10;UBERON:0001950!1.16e-11!10;UBERON:0002619!1.98e-10!17;UBERON:0000956!3.68e-10!21;UBERON:0001869!3.68e-10!21;UBERON:0000203!3.68e-10!21;UBERON:0001894!6.50e-07!10;UBERON:0006222!6.50e-07!10
}}
}}

Revision as of 17:40, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:103994124..103994142,+p1@Crhr1
Mm9::chr11:103994146..103994153,+p5@Crhr1
Mm9::chr11:103994155..103994166,+p3@Crhr1
Mm9::chr11:103994178..103994190,+p2@Crhr1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)3.24e-0723
neuroblast (sensu Vertebrata)3.24e-0723

Uber Anatomy
Ontology termp-valuen
regional part of nervous system4.48e-2754
ecto-epithelium4.01e-2673
ectoderm-derived structure3.65e-2595
ectoderm3.65e-2595
presumptive ectoderm3.65e-2595
neural tube4.19e-2552
neural rod4.19e-2552
future spinal cord4.19e-2552
neural keel4.19e-2552
brain7.33e-2447
future brain7.33e-2447
neurectoderm8.61e-2464
neural plate8.61e-2464
presumptive neural plate8.61e-2464
nervous system3.24e-2375
regional part of brain1.02e-2246
central nervous system3.35e-2273
pre-chordal neural plate1.54e-2049
anterior neural tube3.78e-2040
regional part of forebrain2.24e-1939
forebrain2.24e-1939
future forebrain2.24e-1939
gray matter4.95e-1534
structure with developmental contribution from neural crest2.00e-1492
brain grey matter1.58e-1329
regional part of telencephalon1.58e-1329
telencephalon1.58e-1329
occipital lobe1.16e-1110
visual cortex1.16e-1110
neocortex1.16e-1110
regional part of cerebral cortex1.98e-1017
cerebral cortex3.68e-1021
cerebral hemisphere3.68e-1021
pallium3.68e-1021
diencephalon6.50e-0710
future diencephalon6.50e-0710


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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