Coexpression cluster:C2879: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|full_id=C2879_salivary_Fibroblast_vagina_liver_Hepatocyte_Skeletal_hepatoblastoma | |full_id=C2879_salivary_Fibroblast_vagina_liver_Hepatocyte_Skeletal_hepatoblastoma | ||
|id=C2879 | |id=C2879 | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000481! | |ontology_enrichment_uberon=UBERON:0000481!1.41e-25!342;UBERON:0011216!3.91e-17!223;UBERON:0000477!6.39e-17!373;UBERON:0000468!8.08e-16!656;UBERON:0004119!3.10e-15!160;UBERON:0000925!3.10e-15!160;UBERON:0006595!3.10e-15!160;UBERON:0000475!6.09e-14!264;UBERON:0000467!1.61e-13!624;UBERON:0000480!3.11e-13!625;UBERON:0000119!3.72e-13!309;UBERON:0001007!6.90e-13!145;UBERON:0001555!6.90e-13!145;UBERON:0007026!6.90e-13!145;UBERON:0000483!1.17e-12!306;UBERON:0000062!4.62e-12!503;UBERON:0004121!8.96e-12!171;UBERON:0000924!8.96e-12!171;UBERON:0006601!8.96e-12!171;UBERON:0003102!9.82e-12!99;UBERON:0003104!1.09e-11!160;UBERON:0009142!1.09e-11!160;UBERON:0000922!3.12e-11!592;UBERON:0005423!1.79e-10!581;UBERON:0000064!1.03e-09!218;UBERON:0001048!1.33e-09!160;UBERON:0004921!1.38e-09!118;UBERON:0002050!1.52e-09!564;UBERON:0002100!2.73e-09!199;UBERON:0005256!3.41e-09!122;UBERON:0000923!6.00e-09!560;UBERON:0010316!6.00e-09!560;UBERON:0005291!6.00e-09!560;UBERON:0006598!6.00e-09!560;UBERON:0010317!6.00e-09!560;UBERON:0002532!6.00e-09!560;UBERON:0002530!1.43e-08!59;UBERON:0007023!2.61e-08!114;UBERON:0010314!2.64e-08!132;UBERON:0000161!7.74e-08!36;UBERON:0004923!7.79e-07!66;UBERON:0002365!7.90e-07!31;UBERON:0002330!7.90e-07!31;UBERON:0010371!8.55e-07!104 | ||
|tf_chipseq_enrich=CEBPB#1051;4:7.97114762582482:0.000247638578809083:0.00268651973950782!EP300#2033;4:6.7739417262232:0.000474845982144264:0.00435288681902614!FOXA1#3169;4:11.0814197493855:6.62943068949433e-05:0.00107344358415519!FOXA2#3170;4:24.6304637526652:2.71504128667089e-06:9.4550249062561e-05!GATA2#2624;4:12.744931733554:3.78864877853583e-05:0.000724428212708722!GTF2F1#2962;4:12.7396608767577:3.79492332235515e-05:0.000719306709371053!HDAC2#3066;4:13.4156202366263:3.0859005065161e-05:0.000628610031207402!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.01866052890982!MAX#4149;4:6.45255550900712:0.000576761319564549:0.00486522699733478!MXI1#4601;4:9.9615716287593:0.000101522475495045:0.00142761624050451!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00889892431595927!NR3C1#2908;4:14.973023331173:1.98868032687801e-05:0.000444649506869647!RAD21#5885;4:10.3550338954563:8.6948481184721e-05:0.00129930067627001!RFX5#5993;4:12.0479108271951:4.74457429336527e-05:0.000828626412416012!SMARCB1#6598;4:18.2527157811574:9.00423392720929e-06:0.000242182123905179!SP1#6667;4:5.6983813781409:0.000948260606533398:0.00685698189335606!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0323319271599189!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0245016124467693!TCF7L2#6934;4:10.7701765631373:7.42969445082454e-05:0.00115761578211199!TRIM28#10155;4:18.5905250452625:8.36730015875654e-06:0.000231060936351236!USF1#7391;4:6.36149927720796:0.000610501139914083:0.00509062902606682!USF2#7392;4:12.9921973850696:3.50833029870167e-05:0.000683084466939044!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0107088192904618!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00249944299133785 | |tf_chipseq_enrich=CEBPB#1051;4:7.97114762582482:0.000247638578809083:0.00268651973950782!EP300#2033;4:6.7739417262232:0.000474845982144264:0.00435288681902614!FOXA1#3169;4:11.0814197493855:6.62943068949433e-05:0.00107344358415519!FOXA2#3170;4:24.6304637526652:2.71504128667089e-06:9.4550249062561e-05!GATA2#2624;4:12.744931733554:3.78864877853583e-05:0.000724428212708722!GTF2F1#2962;4:12.7396608767577:3.79492332235515e-05:0.000719306709371053!HDAC2#3066;4:13.4156202366263:3.0859005065161e-05:0.000628610031207402!HEY1#23462;4:4.04011104310571:0.0037530463691798:0.01866052890982!MAX#4149;4:6.45255550900712:0.000576761319564549:0.00486522699733478!MXI1#4601;4:9.9615716287593:0.000101522475495045:0.00142761624050451!MYC#4609;4:5.2222818716094:0.00134430939527274:0.00889892431595927!NR3C1#2908;4:14.973023331173:1.98868032687801e-05:0.000444649506869647!RAD21#5885;4:10.3550338954563:8.6948481184721e-05:0.00129930067627001!RFX5#5993;4:12.0479108271951:4.74457429336527e-05:0.000828626412416012!SMARCB1#6598;4:18.2527157811574:9.00423392720929e-06:0.000242182123905179!SP1#6667;4:5.6983813781409:0.000948260606533398:0.00685698189335606!TAF1#6872;4:3.34304628574529:0.00800566489870165:0.0323319271599189!TBP#6908;4:3.70677068709639:0.00529637781478435:0.0245016124467693!TCF7L2#6934;4:10.7701765631373:7.42969445082454e-05:0.00115761578211199!TRIM28#10155;4:18.5905250452625:8.36730015875654e-06:0.000231060936351236!USF1#7391;4:6.36149927720796:0.000610501139914083:0.00509062902606682!USF2#7392;4:12.9921973850696:3.50833029870167e-05:0.000683084466939044!YY1#7528;4:4.91117074985386:0.0017187183805544:0.0107088192904618!ZNF263#10127;4:8.22184163701068:0.000218787118095832:0.00249944299133785 | ||
|tfbs_overrepresentation=0.191353,0.0774498,0.000362766,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.0323727,0.164339,0.193153,0.0816702,0.00119189,0.128744,5.99111e-05,0.141416,0.00293219,0.172742,0.107781,0.124486,0.0550418,0.276459,0.039931,0.119094,0.186914,6.18882e-09,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.000372903,4.94495e-08,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.000171338,0.145553,0.158244,0.19996,0.00262518,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.00077243,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.00664966,0.216289,0.470097,0.0892037,0.0071179,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.0384285,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.00121525,0.0491142,0.280878,0.0541957,0.0883058,0.0184799,0.0187949,0.00894857,0.23573,0.0450707,0.194256,0.0235108,0.00921236,0.0447483,0.0270258,0.0748174,0.180926,7.05263e-06,0.215858,0.0420112,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.000527803,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.000877371,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,3.15833e-05,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,1.73089e-06,0.124982,0.152417,0.192028,0.346873,0.000625723,0.0530169,0.166112,2.64977e-05,0.00173649,0.2321,0.179282,0.202544,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,2.94978e-05,0.236268,2.61451e-05,0.108938,0.224443,0.140245,0.0318635,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.00409908,0.14349,0.000294587,0.0797088,0.0408965,0.0799774,0.00107795,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.0143681,0.218801,0.21271,1.50754e-05,0.0830988,0.134907,0.184613,3.17396e-07,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,1.79446e-06,0.675167,0.000556141,4.19891e-07,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.00870304,0.109226,0.0121793,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,1.33696e-05,0.1286,4.61437e-06,0.14037,0.259646,0.0916845,0.687863,0.0816983,7.49885e-06,0.211672,0.167038,0.0457509,0.00589547,0.00590953,0.00761313,0.000691559,0.00511249,0.0711631,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.000932717,0.327364,0.810881,5.40003e-05,0.73998,0.3024,0.407767,0.0246898,0.420045,0.0114582,0.332539,0.545329,0.0255379,0.00166801,0.594055,0.414547,0.489273,0.00220562,0.020249,0.364388,0.34505,0.0785304,0.0334148,0.147194,0.687176,0.341822,0.241524,0.00337546,0.234628,0.168228,0.143893,0.41477,0.279946,0.524104,0.0262654,0.563725,0.0526663,0.000600189,0.257158,0.127765,0.00622965,0.0126595,0.322903,0.350886,0.380582,0.0590382,0.00185628,0.286293,0.606558,0.00171359,0.359128,0.395864,0.683133,0.368633,0.547291,0.0292801,0.0364944,0.00131544,3.35406e-05,0.181193,0.464342,0.683088,0.714007,0.0301914,0.0835105,0.402752,0.548076,0.0696107,0.302142,0.239545,0.432689,0.640367,0.343881,0.730486,0.239383,0.0031052,0.626346,0.316925,0.0728506,0.210197,0.211506,0.0883859,0.00478831,0.238465,0.00802494,0.853221,0.6873,0.508325,0.0636247,0.0225709,0.656755,0.188468,0.280307,0.393583,0.469888,0.0596868,4.41748e-06,0.0478748,0.00320607,0.694744,0.605423,0.000123859,0.00264152,0.000278862,0.0112154,0.0166186,0.453022,0.35234,0.644643,0.0071728,0.291917,0.421082,0.25441,0.00163829,0.0270471,0.517933,0.219758,1.13845e-05,0.252778,0.73448,0.419676,0.0189509,0.189182,0.00443112,0.46699,0.546448,0.560187,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.00873625,0.651295,0.370995,7.52097e-06,0.429696,0.386216,0.385297,0.00845714,0.606408,0.0181818,0.360203,0.333725,0.447838,0.289666,0.500627,0.513045,0.0233876,0.0523844,0.287542,0.00387002,0.261923,0.754776,0.00784981,3.08192e-07,0.424526,0.0939249,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.049262,0.244339,0.117049,0.0786167,0.629381,0.000420051,0.00278013,0.00010192,0.436806,0.21267,0.499072,0.0498754,0.734628,0.397546,0.0919254,0.0735469,0.000219546,0.102621,0.0760107,0.187642,0.286156,0.0377469,0.184029,0.540322,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.00103958,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.0851202,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.0231275,0.000513165,0.0580534,0.00518407,3.46664e-05,0.168389,0.270152,0.249506,0.111145,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.0438854,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.000880583,0.000149803,0.030904,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.000142533,0.183585,0.271662,0.03989,0.0156153,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.00278567,0.357807,0.621787,0.178782,0.019419,2.61211e-06,0.271849,0.00477271,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.0277507,0.460406,0.0438521,0.435508,0.0439557,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.0922008,0.187953,0.051459,0.114868,0.0726892,0.0187556,0.32305,0.278397,0.0328172,0.170848,0.487259,0.000530204,0.363016,0.100188,0.223102,0.107653,0.235857,0.017951,0.191914,0.184022,0.216557,0.182956,0.000291155,0.389792,0.0109594,4.2832e-05,0.000354369,0.544477,0.0159364,0.101893,0.142875,0.167635,0.0155918,0.0721023,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.0705088,0.00252788,0.0560157,0.278645,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.00202402,0.486024,0.0803251,0.226641,0.379174,0.0939463,7.433e-08,0.367925,0.0471607,3.70573e-05,0.0278061,0.404165,0.165788,0.00388363,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,1.76853e-05,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,2.15716e-06,0.246601,0.193021,0.608002,0.0016225,0.0946865,0.120618,1.83632e-06,0.18762,0.195618,0.000383651,0.201169,0.220353,0.034089,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.00777449,0.135777,0.147842,0.0339286,0.217363,0.119015,0.690952,0.21618,0.243266,0.107021,0.00275781,0.20272,0.0896967,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.0420826,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.003653,0.189333,0.502211,0.296013,0.0221603,0.537932,0.459994,0.170061,0.000177338,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.160788,0.0410736,0.0943307,0.483077,0.224887,0.603763,0.0446875,0.627201,0.526336,0.514482,0.0470729,0.017476,0.0413786,0.0284983,0.00116273,0.0690757,0.000126158,0.0021436,8.3478e-06,0.212703,0.00164034,0.364079,0.680099,0.579886,0.421038,0.569409,0.328518,0.000170992,0.310552,0.00456853,0.483764,0.103928,0.0698158,0.209437,0.11765,0.161672,0.598945,0.169076,0.00384718,0.00127982,0.579004,0.00506481,0.00283087,0.860705,0.261575,0.257956,0.264245,0.00147206,0.326516,0.16985,0.00284816,0.475063,0.0220519,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.025886,0.39549,0.234254,0.0011219,0.146291,0.721266,0.00575146,0.252827,0.404625,0.759068,0.00251166,0.715362,0.479581,0.62689,0.0230743,0.274432,0.284496,0.512545,0.512178,0.563206,0.527709,0.321001,0.000284874,0.552023,5.61315e-05,0.189249,0.216102,0.0355932,0.109605,0.00184531,0.0121932,0.226491,0.417131,0.463987,0.0782409,0.156131,0.454761,0.000658711,0.483658,0.0232851,0.301581,0.261657,0.346776,0.466529,0.545655,0.438176,0.349112,0.741477,0.385425,0.307816,0.461541,0.386339,0.0131065,0.598787,0.478745,0.611661,0.319747,0.475047,0.557967,0.608127,0.282281,0.612712,0.2536,0.246827,0.564333,0.70712,0.00162371,0.559969,7.32384e-06,0.668972,0.574252,0.493455,0.0685505,3.74444e-06,0.0694762,0.476541,0.0574793,0.447581,0.42505,0.254628,0.00910372,0.0286377,0.416962,0.632833,0.0125878,0.152547,1.74974e-05,0.000151975,0.102495,0.350933,0.263896,0.0446972,0.00020604,0.000772039,0.242783,0.0947248,0.336551,0.210656,0.246234,5.15178e-06,0.0439036,0.267248,0.118257,0.125087,0.215123,3.37545e-06,0.000504875,0.325254,0.266651,0.0460393,0.231754,0.249415,0.0445044,0.285648,0.0191181,0.391071,0.0433305,0.25563,0.0316941,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.0713545,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.000306974,0.000875654,2.4045e-05,0.189388,0.293546,0.210125,3.80472e-09,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.00796989,0.387837,0.233244,0.000100809,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.00433276,0.000301342,0.184534,0.000221889,0.31749,0.15156,0.287598,0.313858,0.0271466,0.25788,0.181895,0.253768,0.00626086,9.21284e-05,0.170837,0.327002,0.28543,6.85234e-06,0.228479,0.127111,0.259989,0.390754,0.00109897,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,7.97431e-05,5.25768e-06,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,6.21704e-06,0.128632,0.0845989,0.00076273,0.0842401,0.13698,0.0874421,4.78977e-06,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.000126367,0.00119976,0.433518,0.184359,0.000828779,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.000371318,0.286696,0.150674,0.000231487,0.246177,0.35674,0.0104945,0.318525,0.213257,0.287217,0.122782,0.0991993,0.000430266,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,1.51238e-05,0.285122,0.22741,0.203996,0.276721,0.321965,0.264707,3.81646e-05 | |tfbs_overrepresentation=0.191353,0.0774498,0.000362766,0.0631091,0.257053,0.363996,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.0323727,0.164339,0.193153,0.0816702,0.00119189,0.128744,5.99111e-05,0.141416,0.00293219,0.172742,0.107781,0.124486,0.0550418,0.276459,0.039931,0.119094,0.186914,6.18882e-09,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.788552,0.0568767,0.157159,0.0879352,0.000372903,4.94495e-08,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.000171338,0.145553,0.158244,0.19996,0.00262518,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.00077243,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.00664966,0.216289,0.470097,0.0892037,0.0071179,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.368178,0.320801,0.0848546,0.268505,0.0384285,0.0827752,0.112676,0.0655645,0.12511,0.0626609,0.112199,0.150351,0.690341,0.199405,0.121709,0.347653,0.0759036,0.350158,0.00121525,0.0491142,0.280878,0.0541957,0.0883058,0.0184799,0.0187949,0.00894857,0.23573,0.0450707,0.194256,0.0235108,0.00921236,0.0447483,0.0270258,0.0748174,0.180926,7.05263e-06,0.215858,0.0420112,0.182323,0.112709,0.134107,0.228632,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.000527803,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.000877371,0.262198,0.202388,0.701894,0.0913381,0.129544,0.110696,0.0515825,3.15833e-05,0.258146,0.186826,0.233377,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,1.73089e-06,0.124982,0.152417,0.192028,0.346873,0.000625723,0.0530169,0.166112,2.64977e-05,0.00173649,0.2321,0.179282,0.202544,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,2.94978e-05,0.236268,2.61451e-05,0.108938,0.224443,0.140245,0.0318635,0.160458,0.292792,0.147332,0.0622664,0.102951,0.0795624,0.00409908,0.14349,0.000294587,0.0797088,0.0408965,0.0799774,0.00107795,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.0143681,0.218801,0.21271,1.50754e-05,0.0830988,0.134907,0.184613,3.17396e-07,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,1.79446e-06,0.675167,0.000556141,4.19891e-07,0.10068,0.125804,0.122288,0.0624687,0.334388,0.21183,0.275612,0.235571,0.435782,0.00870304,0.109226,0.0121793,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,1.33696e-05,0.1286,4.61437e-06,0.14037,0.259646,0.0916845,0.687863,0.0816983,7.49885e-06,0.211672,0.167038,0.0457509,0.00589547,0.00590953,0.00761313,0.000691559,0.00511249,0.0711631,0.0834863,0.324356,0.545829,0.113754,0.0504034,0.000932717,0.327364,0.810881,5.40003e-05,0.73998,0.3024,0.407767,0.0246898,0.420045,0.0114582,0.332539,0.545329,0.0255379,0.00166801,0.594055,0.414547,0.489273,0.00220562,0.020249,0.364388,0.34505,0.0785304,0.0334148,0.147194,0.687176,0.341822,0.241524,0.00337546,0.234628,0.168228,0.143893,0.41477,0.279946,0.524104,0.0262654,0.563725,0.0526663,0.000600189,0.257158,0.127765,0.00622965,0.0126595,0.322903,0.350886,0.380582,0.0590382,0.00185628,0.286293,0.606558,0.00171359,0.359128,0.395864,0.683133,0.368633,0.547291,0.0292801,0.0364944,0.00131544,3.35406e-05,0.181193,0.464342,0.683088,0.714007,0.0301914,0.0835105,0.402752,0.548076,0.0696107,0.302142,0.239545,0.432689,0.640367,0.343881,0.730486,0.239383,0.0031052,0.626346,0.316925,0.0728506,0.210197,0.211506,0.0883859,0.00478831,0.238465,0.00802494,0.853221,0.6873,0.508325,0.0636247,0.0225709,0.656755,0.188468,0.280307,0.393583,0.469888,0.0596868,4.41748e-06,0.0478748,0.00320607,0.694744,0.605423,0.000123859,0.00264152,0.000278862,0.0112154,0.0166186,0.453022,0.35234,0.644643,0.0071728,0.291917,0.421082,0.25441,0.00163829,0.0270471,0.517933,0.219758,1.13845e-05,0.252778,0.73448,0.419676,0.0189509,0.189182,0.00443112,0.46699,0.546448,0.560187,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.00873625,0.651295,0.370995,7.52097e-06,0.429696,0.386216,0.385297,0.00845714,0.606408,0.0181818,0.360203,0.333725,0.447838,0.289666,0.500627,0.513045,0.0233876,0.0523844,0.287542,0.00387002,0.261923,0.754776,0.00784981,3.08192e-07,0.424526,0.0939249,0.356381,0.184395,0.55524,0.624689,0.206945,0.304719,0.462531,0.049262,0.244339,0.117049,0.0786167,0.629381,0.000420051,0.00278013,0.00010192,0.436806,0.21267,0.499072,0.0498754,0.734628,0.397546,0.0919254,0.0735469,0.000219546,0.102621,0.0760107,0.187642,0.286156,0.0377469,0.184029,0.540322,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.00103958,0.139918,0.34669,0.0828344,0.4729,0.0238089,0.0851202,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.0231275,0.000513165,0.0580534,0.00518407,3.46664e-05,0.168389,0.270152,0.249506,0.111145,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.0438854,0.417003,0.251882,0.172263,0.243319,0.0637178,0.257309,0.500692,0.000880583,0.000149803,0.030904,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.000142533,0.183585,0.271662,0.03989,0.0156153,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.00278567,0.357807,0.621787,0.178782,0.019419,2.61211e-06,0.271849,0.00477271,0.105411,0.0997542,0.209692,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.0277507,0.460406,0.0438521,0.435508,0.0439557,0.0522771,0.0787278,0.515487,0.159873,0.142462,0.143935,0.332403,0.0379537,0.0922008,0.187953,0.051459,0.114868,0.0726892,0.0187556,0.32305,0.278397,0.0328172,0.170848,0.487259,0.000530204,0.363016,0.100188,0.223102,0.107653,0.235857,0.017951,0.191914,0.184022,0.216557,0.182956,0.000291155,0.389792,0.0109594,4.2832e-05,0.000354369,0.544477,0.0159364,0.101893,0.142875,0.167635,0.0155918,0.0721023,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,0.122878,0.187329,0.0451012,0.0976639,0.0705088,0.00252788,0.0560157,0.278645,0.365775,0.155708,0.248017,0.22995,0.652972,0.0760151,0.00202402,0.486024,0.0803251,0.226641,0.379174,0.0939463,7.433e-08,0.367925,0.0471607,3.70573e-05,0.0278061,0.404165,0.165788,0.00388363,0.279778,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,1.76853e-05,0.284016,0.0754883,0.299492,0.100006,0.362866,0.197817,0.251078,0.279874,0.133127,0.410303,0.223717,0.426452,0.196838,2.15716e-06,0.246601,0.193021,0.608002,0.0016225,0.0946865,0.120618,1.83632e-06,0.18762,0.195618,0.000383651,0.201169,0.220353,0.034089,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.415419,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.00777449,0.135777,0.147842,0.0339286,0.217363,0.119015,0.690952,0.21618,0.243266,0.107021,0.00275781,0.20272,0.0896967,0.61565,0.0780061,0.315336,0.230477,0.279823,0.295555,0.502112,0.0420826,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.003653,0.189333,0.502211,0.296013,0.0221603,0.537932,0.459994,0.170061,0.000177338,0.25423,0.490559,0.45013,0.500698,0.472542,0.685908,0.160788,0.0410736,0.0943307,0.483077,0.224887,0.603763,0.0446875,0.627201,0.526336,0.514482,0.0470729,0.017476,0.0413786,0.0284983,0.00116273,0.0690757,0.000126158,0.0021436,8.3478e-06,0.212703,0.00164034,0.364079,0.680099,0.579886,0.421038,0.569409,0.328518,0.000170992,0.310552,0.00456853,0.483764,0.103928,0.0698158,0.209437,0.11765,0.161672,0.598945,0.169076,0.00384718,0.00127982,0.579004,0.00506481,0.00283087,0.860705,0.261575,0.257956,0.264245,0.00147206,0.326516,0.16985,0.00284816,0.475063,0.0220519,0.183837,0.507324,0.126097,0.3955,0.442469,0.212239,0.294954,0.156999,0.35974,0.025886,0.39549,0.234254,0.0011219,0.146291,0.721266,0.00575146,0.252827,0.404625,0.759068,0.00251166,0.715362,0.479581,0.62689,0.0230743,0.274432,0.284496,0.512545,0.512178,0.563206,0.527709,0.321001,0.000284874,0.552023,5.61315e-05,0.189249,0.216102,0.0355932,0.109605,0.00184531,0.0121932,0.226491,0.417131,0.463987,0.0782409,0.156131,0.454761,0.000658711,0.483658,0.0232851,0.301581,0.261657,0.346776,0.466529,0.545655,0.438176,0.349112,0.741477,0.385425,0.307816,0.461541,0.386339,0.0131065,0.598787,0.478745,0.611661,0.319747,0.475047,0.557967,0.608127,0.282281,0.612712,0.2536,0.246827,0.564333,0.70712,0.00162371,0.559969,7.32384e-06,0.668972,0.574252,0.493455,0.0685505,3.74444e-06,0.0694762,0.476541,0.0574793,0.447581,0.42505,0.254628,0.00910372,0.0286377,0.416962,0.632833,0.0125878,0.152547,1.74974e-05,0.000151975,0.102495,0.350933,0.263896,0.0446972,0.00020604,0.000772039,0.242783,0.0947248,0.336551,0.210656,0.246234,5.15178e-06,0.0439036,0.267248,0.118257,0.125087,0.215123,3.37545e-06,0.000504875,0.325254,0.266651,0.0460393,0.231754,0.249415,0.0445044,0.285648,0.0191181,0.391071,0.0433305,0.25563,0.0316941,0.160955,0.256687,0.0432189,0.122439,0.16188,0.23235,0.290415,0.0713545,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.000306974,0.000875654,2.4045e-05,0.189388,0.293546,0.210125,3.80472e-09,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.437467,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.00796989,0.387837,0.233244,0.000100809,0.327401,0.195748,0.27845,0.161712,0.237871,0.239139,0.095257,0.328852,0.332769,0.262022,0.00433276,0.000301342,0.184534,0.000221889,0.31749,0.15156,0.287598,0.313858,0.0271466,0.25788,0.181895,0.253768,0.00626086,9.21284e-05,0.170837,0.327002,0.28543,6.85234e-06,0.228479,0.127111,0.259989,0.390754,0.00109897,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,7.97431e-05,5.25768e-06,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.242121,0.298673,0.244395,6.21704e-06,0.128632,0.0845989,0.00076273,0.0842401,0.13698,0.0874421,4.78977e-06,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.000126367,0.00119976,0.433518,0.184359,0.000828779,0.325785,0.257476,0.291176,0.376537,0.322827,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.362898,0.302133,0.40806,0.151361,0.000371318,0.286696,0.150674,0.000231487,0.246177,0.35674,0.0104945,0.318525,0.213257,0.287217,0.122782,0.0991993,0.000430266,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.34423,0.0936726,0.343425,1.51238e-05,0.285122,0.22741,0.203996,0.276721,0.321965,0.264707,3.81646e-05 | ||
}} | }} | ||
Revision as of 14:31, 19 October 2012
Full id: C2879_salivary_Fibroblast_vagina_liver_Hepatocyte_Skeletal_hepatoblastoma
Phase1 CAGE Peaks
| Hg19::chr7:134576184..134576236,+ | p2@CALD1 |
| Hg19::chr7:134576237..134576280,+ | p5@CALD1 |
| Hg19::chr7:134576283..134576309,+ | p9@CALD1 |
| Hg19::chr7:134576317..134576374,+ | p3@CALD1 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CEBPB#1051 | 4 | 7.97114762582482 | 0.000247638578809083 | 0.00268651973950782 |
| EP300#2033 | 4 | 6.7739417262232 | 0.000474845982144264 | 0.00435288681902614 |
| FOXA1#3169 | 4 | 11.0814197493855 | 6.62943068949433e-05 | 0.00107344358415519 |
| FOXA2#3170 | 4 | 24.6304637526652 | 2.71504128667089e-06 | 9.4550249062561e-05 |
| GATA2#2624 | 4 | 12.744931733554 | 3.78864877853583e-05 | 0.000724428212708722 |
| GTF2F1#2962 | 4 | 12.7396608767577 | 3.79492332235515e-05 | 0.000719306709371053 |
| HDAC2#3066 | 4 | 13.4156202366263 | 3.0859005065161e-05 | 0.000628610031207402 |
| HEY1#23462 | 4 | 4.04011104310571 | 0.0037530463691798 | 0.01866052890982 |
| MAX#4149 | 4 | 6.45255550900712 | 0.000576761319564549 | 0.00486522699733478 |
| MXI1#4601 | 4 | 9.9615716287593 | 0.000101522475495045 | 0.00142761624050451 |
| MYC#4609 | 4 | 5.2222818716094 | 0.00134430939527274 | 0.00889892431595927 |
| NR3C1#2908 | 4 | 14.973023331173 | 1.98868032687801e-05 | 0.000444649506869647 |
| RAD21#5885 | 4 | 10.3550338954563 | 8.6948481184721e-05 | 0.00129930067627001 |
| RFX5#5993 | 4 | 12.0479108271951 | 4.74457429336527e-05 | 0.000828626412416012 |
| SMARCB1#6598 | 4 | 18.2527157811574 | 9.00423392720929e-06 | 0.000242182123905179 |
| SP1#6667 | 4 | 5.6983813781409 | 0.000948260606533398 | 0.00685698189335606 |
| TAF1#6872 | 4 | 3.34304628574529 | 0.00800566489870165 | 0.0323319271599189 |
| TBP#6908 | 4 | 3.70677068709639 | 0.00529637781478435 | 0.0245016124467693 |
| TCF7L2#6934 | 4 | 10.7701765631373 | 7.42969445082454e-05 | 0.00115761578211199 |
| TRIM28#10155 | 4 | 18.5905250452625 | 8.36730015875654e-06 | 0.000231060936351236 |
| USF1#7391 | 4 | 6.36149927720796 | 0.000610501139914083 | 0.00509062902606682 |
| USF2#7392 | 4 | 12.9921973850696 | 3.50833029870167e-05 | 0.000683084466939044 |
| YY1#7528 | 4 | 4.91117074985386 | 0.0017187183805544 | 0.0107088192904618 |
| ZNF263#10127 | 4 | 8.22184163701068 | 0.000218787118095832 | 0.00249944299133785 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
