FFCP PHASE1:Mm9::chr7:107756350..107756368,+: Difference between revisions
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|id=chr7:107756350..107756368,+ | |id=chr7:107756350..107756368,+ | ||
|ontology_enrichment_celltype=CL:0002319!1.05e-15!43;CL:0000221!1.52e-15!44;CL:0000133!1.52e-15!44;CL:0000540!2.81e-15!33;CL:0000047!2.81e-15!33;CL:0000031!2.81e-15!33;CL:0000404!2.81e-15!33;CL:0000393!1.61e-13!39;CL:0000211!1.61e-13!39;CL:0000117!1.95e-13!23;CL:0000337!1.95e-13!23;CL:0000055!2.42e-13!50;CL:0002321!6.98e-08!70;CL:0000220!6.98e-08!70 | |ontology_enrichment_celltype=CL:0002319!1.05e-15!43;CL:0000221!1.52e-15!44;CL:0000133!1.52e-15!44;CL:0000540!2.81e-15!33;CL:0000047!2.81e-15!33;CL:0000031!2.81e-15!33;CL:0000404!2.81e-15!33;CL:0000393!1.61e-13!39;CL:0000211!1.61e-13!39;CL:0000117!1.95e-13!23;CL:0000337!1.95e-13!23;CL:0000055!2.42e-13!50;CL:0002321!6.98e-08!70;CL:0000220!6.98e-08!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.02e-16,33;CL:0000047,1.02e-16,33;CL:0000031,1.02e-16,33;CL:0000404,1.02e-16,33;CL:0002319,1.68e-16,43;CL:0000221,2.48e-16,44;CL:0000133,2.48e-16,44;CL:0000117,1.10e-14,23;CL:0000337,1.10e-14,23;CL:0000393,2.34e-14,39;CL:0000211,2.34e-14,39;CL:0002321,1.31e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.86e-31!75;UBERON:0001016!4.86e-31!75;UBERON:0001017!1.07e-30!73;UBERON:0005743!1.07e-30!73;UBERON:0004121!1.81e-28!102;UBERON:0000924!1.81e-28!102;UBERON:0006601!1.81e-28!102;UBERON:0002346!9.39e-24!71;UBERON:0003075!9.39e-24!71;UBERON:0007284!9.39e-24!71;UBERON:0000033!1.47e-22!63;UBERON:0001049!2.10e-22!52;UBERON:0005068!2.10e-22!52;UBERON:0006241!2.10e-22!52;UBERON:0007135!2.10e-22!52;UBERON:0000955!8.57e-21!50;UBERON:0006238!8.57e-21!50;UBERON:0002616!2.75e-20!49;UBERON:0002020!1.07e-18!34;UBERON:0003056!3.36e-18!49;UBERON:0003080!1.74e-16!40;UBERON:0002780!6.62e-16!39;UBERON:0001890!6.62e-16!39;UBERON:0006240!6.62e-16!39;UBERON:0002791!1.98e-15!29;UBERON:0003528!1.98e-15!29;UBERON:0001893!1.98e-15!29;UBERON:0000956!3.61e-11!21;UBERON:0001869!3.61e-11!21;UBERON:0000203!3.61e-11!21;UBERON:0007811!1.81e-09!86;UBERON:0002619!3.64e-09!17;UBERON:0000153!5.11e-09!94;UBERON:0002021!5.70e-08!10;UBERON:0000411!5.70e-08!10;UBERON:0001950!5.70e-08!10 | |ontology_enrichment_uberon=UBERON:0000073!4.86e-31!75;UBERON:0001016!4.86e-31!75;UBERON:0001017!1.07e-30!73;UBERON:0005743!1.07e-30!73;UBERON:0004121!1.81e-28!102;UBERON:0000924!1.81e-28!102;UBERON:0006601!1.81e-28!102;UBERON:0002346!9.39e-24!71;UBERON:0003075!9.39e-24!71;UBERON:0007284!9.39e-24!71;UBERON:0000033!1.47e-22!63;UBERON:0001049!2.10e-22!52;UBERON:0005068!2.10e-22!52;UBERON:0006241!2.10e-22!52;UBERON:0007135!2.10e-22!52;UBERON:0000955!8.57e-21!50;UBERON:0006238!8.57e-21!50;UBERON:0002616!2.75e-20!49;UBERON:0002020!1.07e-18!34;UBERON:0003056!3.36e-18!49;UBERON:0003080!1.74e-16!40;UBERON:0002780!6.62e-16!39;UBERON:0001890!6.62e-16!39;UBERON:0006240!6.62e-16!39;UBERON:0002791!1.98e-15!29;UBERON:0003528!1.98e-15!29;UBERON:0001893!1.98e-15!29;UBERON:0000956!3.61e-11!21;UBERON:0001869!3.61e-11!21;UBERON:0000203!3.61e-11!21;UBERON:0007811!1.81e-09!86;UBERON:0002619!3.64e-09!17;UBERON:0000153!5.11e-09!94;UBERON:0002021!5.70e-08!10;UBERON:0000411!5.70e-08!10;UBERON:0001950!5.70e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.05e-33,75;UBERON:0001017,1.72e-32,73;UBERON:0004121,2.57e-30,95;UBERON:0000924,2.57e-30,95;UBERON:0006601,2.57e-30,95;UBERON:0002346,1.52e-26,64;UBERON:0003075,1.52e-26,64;UBERON:0007284,1.52e-26,64;UBERON:0000073,9.20e-25,54;UBERON:0001049,2.31e-23,52;UBERON:0005068,2.31e-23,52;UBERON:0006241,2.31e-23,52;UBERON:0007135,2.31e-23,52;UBERON:0010371,4.41e-22,73;UBERON:0002020,4.00e-20,34;UBERON:0000955,1.39e-19,47;UBERON:0006238,1.39e-19,47;UBERON:0003056,3.31e-19,49;UBERON:0002616,4.81e-19,46;UBERON:0003080,2.75e-17,40;UBERON:0002780,1.19e-16,39;UBERON:0001890,1.19e-16,39;UBERON:0006240,1.19e-16,39;UBERON:0003528,1.61e-16,29;UBERON:0002791,1.61e-16,29;UBERON:0001893,1.61e-16,29;UBERON:0010314,1.67e-16,92;UBERON:0000956,7.98e-12,21;UBERON:0001869,7.98e-12,21;UBERON:0000203,7.98e-12,21;UBERON:0002619,1.29e-09,17;UBERON:0002021,1.20e-08,10;UBERON:0000411,1.20e-08,10;UBERON:0001950,1.20e-08,10 | |||
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| ||
|short_description=p3@Rab6a | |short_description=p3@Rab6a | ||
}} | }} |
Revision as of 19:30, 13 November 2012
Short description: | p3@Rab6a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rab6a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 146bp_to_ENSMUST00000098252_5end |
EntrezGene: | Rab6a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.02e-16 | 33 |
neuronal stem cell | 1.02e-16 | 33 |
neuroblast | 1.02e-16 | 33 |
electrically signaling cell | 1.02e-16 | 33 |
neural cell | 1.68e-16 | 43 |
ectodermal cell | 2.48e-16 | 44 |
neurectodermal cell | 2.48e-16 | 44 |
CNS neuron (sensu Vertebrata) | 1.10e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.10e-14 | 23 |
electrically responsive cell | 2.34e-14 | 39 |
electrically active cell | 2.34e-14 | 39 |
embryonic cell | 1.31e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.05e-33 | 75 |
central nervous system | 1.72e-32 | 73 |
ectoderm-derived structure | 2.57e-30 | 95 |
ectoderm | 2.57e-30 | 95 |
presumptive ectoderm | 2.57e-30 | 95 |
neurectoderm | 1.52e-26 | 64 |
neural plate | 1.52e-26 | 64 |
presumptive neural plate | 1.52e-26 | 64 |
regional part of nervous system | 9.20e-25 | 54 |
neural tube | 2.31e-23 | 52 |
neural rod | 2.31e-23 | 52 |
future spinal cord | 2.31e-23 | 52 |
neural keel | 2.31e-23 | 52 |
ecto-epithelium | 4.41e-22 | 73 |
gray matter | 4.00e-20 | 34 |
brain | 1.39e-19 | 47 |
future brain | 1.39e-19 | 47 |
pre-chordal neural plate | 3.31e-19 | 49 |
regional part of brain | 4.81e-19 | 46 |
anterior neural tube | 2.75e-17 | 40 |
regional part of forebrain | 1.19e-16 | 39 |
forebrain | 1.19e-16 | 39 |
future forebrain | 1.19e-16 | 39 |
brain grey matter | 1.61e-16 | 29 |
regional part of telencephalon | 1.61e-16 | 29 |
telencephalon | 1.61e-16 | 29 |
structure with developmental contribution from neural crest | 1.67e-16 | 92 |
cerebral cortex | 7.98e-12 | 21 |
cerebral hemisphere | 7.98e-12 | 21 |
pallium | 7.98e-12 | 21 |
regional part of cerebral cortex | 1.29e-09 | 17 |
occipital lobe | 1.20e-08 | 10 |
visual cortex | 1.20e-08 | 10 |
neocortex | 1.20e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.