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MCL coexpression mm9:1260: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!4.98e-19!64;UBERON:0003075!4.98e-19!64;UBERON:0007284!4.98e-19!64;UBERON:0000073!2.27e-18!54;UBERON:0003056!9.05e-18!49;UBERON:0001049!1.90e-17!52;UBERON:0005068!1.90e-17!52;UBERON:0006241!1.90e-17!52;UBERON:0007135!1.90e-17!52;UBERON:0001017!2.36e-17!73;UBERON:0010371!4.37e-17!73;UBERON:0000955!3.57e-16!47;UBERON:0006238!3.57e-16!47;UBERON:0001016!4.63e-16!75;UBERON:0003080!5.45e-16!40;UBERON:0004121!6.04e-16!95;UBERON:0000924!6.04e-16!95;UBERON:0006601!6.04e-16!95;UBERON:0002616!1.64e-15!46;UBERON:0002780!1.89e-15!39;UBERON:0001890!1.89e-15!39;UBERON:0006240!1.89e-15!39;UBERON:0002020!1.18e-14!34;UBERON:0010314!2.37e-14!92;UBERON:0003528!2.81e-13!29;UBERON:0002791!2.81e-13!29;UBERON:0001893!2.81e-13!29;UBERON:0000956!6.44e-10!21;UBERON:0001869!6.44e-10!21;UBERON:0000203!6.44e-10!21;UBERON:0002021!6.52e-08!10;UBERON:0000411!6.52e-08!10;UBERON:0001950!6.52e-08!10;UBERON:0002619!7.94e-08!17
|ontology_enrichment_uberon=UBERON:0002346!4.98e-19!64;UBERON:0003075!4.98e-19!64;UBERON:0007284!4.98e-19!64;UBERON:0000073!2.27e-18!54;UBERON:0003056!9.05e-18!49;UBERON:0001049!1.90e-17!52;UBERON:0005068!1.90e-17!52;UBERON:0006241!1.90e-17!52;UBERON:0007135!1.90e-17!52;UBERON:0001017!2.36e-17!73;UBERON:0010371!4.37e-17!73;UBERON:0000955!3.57e-16!47;UBERON:0006238!3.57e-16!47;UBERON:0001016!4.63e-16!75;UBERON:0003080!5.45e-16!40;UBERON:0004121!6.04e-16!95;UBERON:0000924!6.04e-16!95;UBERON:0006601!6.04e-16!95;UBERON:0002616!1.64e-15!46;UBERON:0002780!1.89e-15!39;UBERON:0001890!1.89e-15!39;UBERON:0006240!1.89e-15!39;UBERON:0002020!1.18e-14!34;UBERON:0010314!2.37e-14!92;UBERON:0003528!2.81e-13!29;UBERON:0002791!2.81e-13!29;UBERON:0001893!2.81e-13!29;UBERON:0000956!6.44e-10!21;UBERON:0001869!6.44e-10!21;UBERON:0000203!6.44e-10!21;UBERON:0002021!6.52e-08!10;UBERON:0000411!6.52e-08!10;UBERON:0001950!6.52e-08!10;UBERON:0002619!7.94e-08!17
|tfbs_overrepresentation_for_novel_motifs=0.491922,0.473747,0.464605,0.535892,0.346849,0.550971,0.645383,0.247459,0.257202,0.283981,1.46067,0.632897,0.247704,0.6581,0.364314,0,0.856992,0.338549,0.232269,0.86893,0.426133,0.35122,2.67147,0.345236,0.472505,0.686615,0.223823,0.572827,0.394364,1.0231,0.558142,0.960397,0.336199,0.589948,0.364821,0.144368,0.871288,0.629145,0.303703,0.752287,0.342638,0.56353,0.0995018,0.366415,0.368882,0.524258,1.82546,1.43855,0.0835644,0.397446,0.839084,0.714419,0.174327,1.10437,1.12205,0.66551,0.406788,1.50238,0.21472,0.663395,0.939962,0.724164,0.269393,0.827522,1.62226,0.869046,1.2599,1.61148,0.935192,1.46355,1.1311,0.253541,1.77235,1.156,0.599223,0.57254,0.204132,0.763395,0.922432,0.430551,0.254777,0.874787,0.722675,1.25583,1.03903,2.18121,0.220054,0.181203,0.780154,1.77427,1.33021,1.04409,0.973447,0.35304,0.810643,0.281222,0.244935,0.976308,0.775372,0.160254,0.326561,0.960112,1.08669,0.839694,0.838613,0.563071,0.8998,0.585058,0.435642,0.428007,0.484547,1.0885,0.431734,0.605144,1.33732,0.340765,0.528609,0.53982,0.858327,0.322606,1.16147,0.805995,0.688501,0.762461,1.39185,0.926209,0.65384,0.966541,1.25836,1.67297,1.06946,0.52828,1.2285,0.679647,1.35909,0.106956,0.500709,0.564999,1.30952,2.14327,1.74232,1.26465,0.700956,0.971067,0.831964,0.564002,0.778321,2.10357,0.503174,0.920761,1.03315,2.22804,1.10596,0.783181,0.678689,1.18867,0.71546,0.376898,0.48935,1.25034,1.31911,1.03816,0.926663,0.482185,0.82857,0.671017,0.86867,0.63125,0.30995
}}
}}

Revision as of 19:38, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:93498473..93498514,-p1@Vezt
Mm9::chr13:70776647..70776703,-p1@BC018507
Mm9::chr16:96303996..96304088,-p1@Brwd1
Mm9::chr18:7868821..7868860,+p1@Wac
Mm9::chr3:108013356..108013420,-p1@Atxn7l2
Mm9::chr8:114167393..114167440,+p1@Zfp1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.36e-1023
neuroblast (sensu Vertebrata)1.36e-1023
neuron5.08e-1033
neuronal stem cell5.08e-1033
neuroblast5.08e-1033
electrically signaling cell5.08e-1033

Uber Anatomy
Ontology termp-valuen
neurectoderm4.98e-1964
neural plate4.98e-1964
presumptive neural plate4.98e-1964
regional part of nervous system2.27e-1854
pre-chordal neural plate9.05e-1849
neural tube1.90e-1752
neural rod1.90e-1752
future spinal cord1.90e-1752
neural keel1.90e-1752
central nervous system2.36e-1773
ecto-epithelium4.37e-1773
brain3.57e-1647
future brain3.57e-1647
nervous system4.63e-1675
anterior neural tube5.45e-1640
ectoderm-derived structure6.04e-1695
ectoderm6.04e-1695
presumptive ectoderm6.04e-1695
regional part of brain1.64e-1546
regional part of forebrain1.89e-1539
forebrain1.89e-1539
future forebrain1.89e-1539
gray matter1.18e-1434
structure with developmental contribution from neural crest2.37e-1492
brain grey matter2.81e-1329
regional part of telencephalon2.81e-1329
telencephalon2.81e-1329
cerebral cortex6.44e-1021
cerebral hemisphere6.44e-1021
pallium6.44e-1021
occipital lobe6.52e-0810
visual cortex6.52e-0810
neocortex6.52e-0810
regional part of cerebral cortex7.94e-0817


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}