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MCL coexpression mm9:2158: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004121!9.39e-32!95;UBERON:0000924!9.39e-32!95;UBERON:0006601!9.39e-32!95;UBERON:0001016!3.81e-31!75;UBERON:0001017!5.30e-31!73;UBERON:0002346!1.51e-26!64;UBERON:0003075!1.51e-26!64;UBERON:0007284!1.51e-26!64;UBERON:0010371!4.11e-25!73;UBERON:0000073!2.03e-24!54;UBERON:0001049!1.60e-23!52;UBERON:0005068!1.60e-23!52;UBERON:0006241!1.60e-23!52;UBERON:0007135!1.60e-23!52;UBERON:0010314!1.04e-22!92;UBERON:0000955!7.14e-20!47;UBERON:0006238!7.14e-20!47;UBERON:0002616!3.99e-19!46;UBERON:0003056!7.46e-18!49;UBERON:0002020!7.96e-18!34;UBERON:0003080!2.86e-15!40;UBERON:0002780!1.17e-14!39;UBERON:0001890!1.17e-14!39;UBERON:0006240!1.17e-14!39;UBERON:0003528!3.04e-14!29;UBERON:0002791!3.04e-14!29;UBERON:0001893!3.04e-14!29;UBERON:0000956!8.86e-10!21;UBERON:0001869!8.86e-10!21;UBERON:0000203!8.86e-10!21;UBERON:0003076!3.02e-09!12;UBERON:0003057!3.02e-09!12;UBERON:0002619!6.80e-09!17;UBERON:0000468!3.95e-08!333;UBERON:0000922!1.01e-07!320
|ontology_enrichment_uberon=UBERON:0004121!9.39e-32!95;UBERON:0000924!9.39e-32!95;UBERON:0006601!9.39e-32!95;UBERON:0001016!3.81e-31!75;UBERON:0001017!5.30e-31!73;UBERON:0002346!1.51e-26!64;UBERON:0003075!1.51e-26!64;UBERON:0007284!1.51e-26!64;UBERON:0010371!4.11e-25!73;UBERON:0000073!2.03e-24!54;UBERON:0001049!1.60e-23!52;UBERON:0005068!1.60e-23!52;UBERON:0006241!1.60e-23!52;UBERON:0007135!1.60e-23!52;UBERON:0010314!1.04e-22!92;UBERON:0000955!7.14e-20!47;UBERON:0006238!7.14e-20!47;UBERON:0002616!3.99e-19!46;UBERON:0003056!7.46e-18!49;UBERON:0002020!7.96e-18!34;UBERON:0003080!2.86e-15!40;UBERON:0002780!1.17e-14!39;UBERON:0001890!1.17e-14!39;UBERON:0006240!1.17e-14!39;UBERON:0003528!3.04e-14!29;UBERON:0002791!3.04e-14!29;UBERON:0001893!3.04e-14!29;UBERON:0000956!8.86e-10!21;UBERON:0001869!8.86e-10!21;UBERON:0000203!8.86e-10!21;UBERON:0003076!3.02e-09!12;UBERON:0003057!3.02e-09!12;UBERON:0002619!6.80e-09!17;UBERON:0000468!3.95e-08!333;UBERON:0000922!1.01e-07!320
|tfbs_overrepresentation_for_novel_motifs=0.641384,4.04844,0.612053,0.688265,0.483253,0.704257,0.803568,0.370124,0.381467,0.489964,0.755749,1.85721,0.37041,0.81685,1.2551,0,1.02248,0.473993,0.352304,0.24402,0.570433,2.42477,0.815872,0.481455,0.620553,0.846564,0.906602,0.727368,0.535752,0.790816,0.711848,1.12823,0.471365,0.318879,0.503207,0.089443,2.02937,0.786577,1.94293,0.40068,1.20358,0.717547,0.544696,0.504971,0.0986756,0.675898,0.938241,0.744678,0.162985,0.539131,1.0041,0.875451,0.282443,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.377213,0.593145,1.32691,0.323563,0.834514,0.318792,0.926147,1.08947,0.575233,0.37865,1.04072,0.884013,0.362446,1.20828,0.11855,12.8657,0.791209,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,2.87252,0.409166,0.367176,1.14445,0.938512,0.264911,0.460566,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,1.42067,0.57247,0.633483,1.25851,0.576517,0.7614,1.51002,0.476467,0.143825,0.692434,1.02384,0.456123,1.33244,0.970073,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,0.493609,1.23918,0.680176,1.40022,0.839311,1.53196,0.569254,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,3.31537,1.1391,0.996781,0.718046,0.941555,2.27909,0.653418,0.485304,0.293812,0.542121,1.27621,0.416214,0.838313,1.35996,0.87653,2.21562,2.61213,0.650472,1.49167,1.20739,1.09379,0.630949,0.993294,0.830321,0.459159,0.788782,0.992915
}}
}}

Revision as of 20:59, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:81767183..81767269,+p1@Csdc2
Mm9::chr15:81767276..81767304,+p2@Csdc2
Mm9::chr15:81767310..81767330,+p4@Csdc2
Mm9::chr15:81767341..81767364,+p3@Csdc2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
ectoderm-derived structure9.39e-3295
ectoderm9.39e-3295
presumptive ectoderm9.39e-3295
nervous system3.81e-3175
central nervous system5.30e-3173
neurectoderm1.51e-2664
neural plate1.51e-2664
presumptive neural plate1.51e-2664
ecto-epithelium4.11e-2573
regional part of nervous system2.03e-2454
neural tube1.60e-2352
neural rod1.60e-2352
future spinal cord1.60e-2352
neural keel1.60e-2352
structure with developmental contribution from neural crest1.04e-2292
brain7.14e-2047
future brain7.14e-2047
regional part of brain3.99e-1946
pre-chordal neural plate7.46e-1849
gray matter7.96e-1834
anterior neural tube2.86e-1540
regional part of forebrain1.17e-1439
forebrain1.17e-1439
future forebrain1.17e-1439
brain grey matter3.04e-1429
regional part of telencephalon3.04e-1429
telencephalon3.04e-1429
cerebral cortex8.86e-1021
cerebral hemisphere8.86e-1021
pallium8.86e-1021
posterior neural tube3.02e-0912
chordal neural plate3.02e-0912
regional part of cerebral cortex6.80e-0917
multi-cellular organism3.95e-08333
embryo1.01e-07320


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}