FFCP PHASE1:Hg19::chr20:35856764..35856768,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6185|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10382|TSSclassifier=N|UniProt=|association_with_transcript=-268bp_to_ENST00000437329_5end|coexpression_cluster_id=C545|description=CAGE_peak_25_at_RPN2_5end|id=chr20:35856764..35856768,+|ontology_enrichment_celltype=CL:0002605!1.02e-27!3;CL:0000128!3.20e-12!7;CL:0000126!3.20e-12!7;CL:0000127!3.20e-12!7;CL:0002453!3.20e-12!7;CL:0002319!1.93e-11!25;CL:0000047!1.78e-10!8;CL:0000313!7.55e-10!1;CL:0000133!3.44e-08!59;CL:0000540!9.15e-07!6;CL:0000031!9.15e-07!6;CL:0000404!9.15e-07!6|ontology_enrichment_celltype_v019=CL:0002605;1.16e-117;3!CL:0000128;3.85e-51;7!CL:0000126;3.85e-51;7!CL:0000127;3.85e-51;7!CL:0000243;1.11e-21;15!CL:0000125;1.11e-21;15!CL:0000095;1.68e-19;17!CL:0002319;5.42e-14;25|ontology_enrichment_celltype_v019_2=CL:0002605,1.16e-117,3;CL:0000128,3.85e-51,7;CL:0000126,3.85e-51,7;CL:0000127,3.85e-51,7;CL:0002453,3.85e-51,7;CL:0000243,1.11e-21,15;CL:0000125,1.11e-21,15;CL:0000030,1.11e-21,15;CL:0000339,1.11e-21,15;CL:0000095,1.68e-19,17;CL:0000123,1.68e-19,17;CL:0002319,5.42e-14,25;CL:0000333,4.33e-09,41|ontology_enrichment_development_v019=CL:0000339;1.11e-21;15!UBERON:0005062;2.94e-11;4!UBERON:0007284;2.94e-11;4!CL:0000133;6.47e-07;59|ontology_enrichment_disease=DOID:2152!7.55e-10!1|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002426!1.80e-10!1;UBERON:0003831!1.80e-10!1;UBERON:0003898!1.80e-10!1;UBERON:0004830!1.80e-10!1;UBERON:0001774!1.80e-10!1;UBERON:0003830!1.80e-10!1;UBERON:0005175!1.80e-10!1;UBERON:0003897!1.80e-10!1;UBERON:0001103!1.80e-10!1;UBERON:0010084!1.80e-10!1;UBERON:0002146!1.98e-10!1;UBERON:0005623!1.98e-10!1;UBERON:0000989!3.71e-10!1;UBERON:0008811!3.71e-10!1;UBERON:0006258!3.71e-10!1;UBERON:0005876!3.71e-10!1;UBERON:0004874!3.71e-10!1;UBERON:0004911!7.55e-10!1;UBERON:0000956!2.16e-08!25;UBERON:0000203!2.16e-08!25;UBERON:0000073!1.85e-07!94;UBERON:0001016!1.85e-07!94;UBERON:0001017!3.69e-07!82;UBERON:0005743!8.94e-07!86|ontology_enrichment_uberon_v019=UBERON:0002146;1.21e-40;1!UBERON:0002426;1.21e-40;1!UBERON:0003831;1.21e-40;1!UBERON:0003898;1.21e-40;1!UBERON:0004830;1.21e-40;1!UBERON:0005623;1.21e-40;1!UBERON:0003830;1.21e-40;1!UBERON:0005175;1.21e-40;1!UBERON:0001774;1.21e-40;1!UBERON:0001103;1.21e-40;1!UBERON:0005090;4.21e-21;2!UBERON:0001630;4.21e-21;2!UBERON:0003978;1.50e-14;3!UBERON:0000946;1.50e-14;3!UBERON:0000956;1.70e-14;25!UBERON:0000203;1.70e-14;25!UBERON:0002791;4.90e-12;32!UBERON:0001869;4.90e-12;32!UBERON:0003528;2.13e-11;34!UBERON:0002020;2.13e-11;34!UBERON:0001893;2.13e-11;34!UBERON:0002780;2.00e-07;41!UBERON:0001890;2.00e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0002426,9.91e-41,1;UBERON:0003831,9.91e-41,1;UBERON:0003898,9.91e-41,1;UBERON:0004830,9.91e-41,1;UBERON:0003830,9.91e-41,1;UBERON:0005175,9.91e-41,1;UBERON:0001774,9.91e-41,1;UBERON:0001103,9.91e-41,1;UBERON:0010084,9.91e-41,1;UBERON:0002146,1.48e-40,1;UBERON:0005623,1.48e-40,1;UBERON:0005090,3.81e-21,2;UBERON:0001630,3.81e-21,2;UBERON:0003978,1.60e-14,3;UBERON:0009751,1.60e-14,3;UBERON:0000946,1.60e-14,3;UBERON:0002523,1.60e-14,3;UBERON:0005983,1.60e-14,3;UBERON:0002165,1.60e-14,3;UBERON:0002062,1.60e-14,3;UBERON:0007280,1.60e-14,3;UBERON:0000956,1.70e-14,25;UBERON:0000203,1.70e-14,25;UBERON:0002791,1.33e-11,32;UBERON:0001869,1.33e-11,32;UBERON:0003528,5.49e-11,34;UBERON:0002020,5.49e-11,34;UBERON:0001893,5.49e-11,34;UBERON:0002780,2.74e-09,41;UBERON:0001890,2.74e-09,41;UBERON:0003080,2.74e-09,41;UBERON:0006240,2.74e-09,41;UBERON:0003075,2.69e-08,82;UBERON:0007284,2.69e-08,82;UBERON:0002346,6.09e-08,86;UBERON:0000073,2.17e-07,53;UBERON:0002616,2.17e-07,53;UBERON:0001049,4.88e-07,56;UBERON:0005068,4.88e-07,56;UBERON:0006241,4.88e-07,56;UBERON:0007135,4.88e-07,56;UBERON:0004797,5.70e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.29719171688325,1.23186982565596,1.88313959392204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811512834825538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6185 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10382 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-268bp_to_ENST00000437329_5end | |||
|coexpression_cluster_id=C545 | |||
|description=CAGE_peak_25_at_RPN2_5end | |||
|id=chr20:35856764..35856768,+ | |||
|ontology_enrichment_celltype=CL:0002605!1.02e-27!3;CL:0000128!3.20e-12!7;CL:0000126!3.20e-12!7;CL:0000127!3.20e-12!7;CL:0002453!3.20e-12!7;CL:0002319!1.93e-11!25;CL:0000047!1.78e-10!8;CL:0000313!7.55e-10!1;CL:0000133!3.44e-08!59;CL:0000540!9.15e-07!6;CL:0000031!9.15e-07!6;CL:0000404!9.15e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002605;1.16e-117;3!CL:0000128;3.85e-51;7!CL:0000126;3.85e-51;7!CL:0000127;3.85e-51;7!CL:0000243;1.11e-21;15!CL:0000125;1.11e-21;15!CL:0000095;1.68e-19;17!CL:0002319;5.42e-14;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.16e-117,3;CL:0000128,3.85e-51,7;CL:0000126,3.85e-51,7;CL:0000127,3.85e-51,7;CL:0002453,3.85e-51,7;CL:0000243,1.11e-21,15;CL:0000125,1.11e-21,15;CL:0000030,1.11e-21,15;CL:0000339,1.11e-21,15;CL:0000095,1.68e-19,17;CL:0000123,1.68e-19,17;CL:0002319,5.42e-14,25;CL:0000333,4.33e-09,41 | |||
|ontology_enrichment_development_v019=CL:0000339;1.11e-21;15!UBERON:0005062;2.94e-11;4!UBERON:0007284;2.94e-11;4!CL:0000133;6.47e-07;59 | |||
|ontology_enrichment_disease=DOID:2152!7.55e-10!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002426!1.80e-10!1;UBERON:0003831!1.80e-10!1;UBERON:0003898!1.80e-10!1;UBERON:0004830!1.80e-10!1;UBERON:0001774!1.80e-10!1;UBERON:0003830!1.80e-10!1;UBERON:0005175!1.80e-10!1;UBERON:0003897!1.80e-10!1;UBERON:0001103!1.80e-10!1;UBERON:0010084!1.80e-10!1;UBERON:0002146!1.98e-10!1;UBERON:0005623!1.98e-10!1;UBERON:0000989!3.71e-10!1;UBERON:0008811!3.71e-10!1;UBERON:0006258!3.71e-10!1;UBERON:0005876!3.71e-10!1;UBERON:0004874!3.71e-10!1;UBERON:0004911!7.55e-10!1;UBERON:0000956!2.16e-08!25;UBERON:0000203!2.16e-08!25;UBERON:0000073!1.85e-07!94;UBERON:0001016!1.85e-07!94;UBERON:0001017!3.69e-07!82;UBERON:0005743!8.94e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002146;1.21e-40;1!UBERON:0002426;1.21e-40;1!UBERON:0003831;1.21e-40;1!UBERON:0003898;1.21e-40;1!UBERON:0004830;1.21e-40;1!UBERON:0005623;1.21e-40;1!UBERON:0003830;1.21e-40;1!UBERON:0005175;1.21e-40;1!UBERON:0001774;1.21e-40;1!UBERON:0001103;1.21e-40;1!UBERON:0005090;4.21e-21;2!UBERON:0001630;4.21e-21;2!UBERON:0003978;1.50e-14;3!UBERON:0000946;1.50e-14;3!UBERON:0000956;1.70e-14;25!UBERON:0000203;1.70e-14;25!UBERON:0002791;4.90e-12;32!UBERON:0001869;4.90e-12;32!UBERON:0003528;2.13e-11;34!UBERON:0002020;2.13e-11;34!UBERON:0001893;2.13e-11;34!UBERON:0002780;2.00e-07;41!UBERON:0001890;2.00e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002426,9.91e-41,1;UBERON:0003831,9.91e-41,1;UBERON:0003898,9.91e-41,1;UBERON:0004830,9.91e-41,1;UBERON:0003830,9.91e-41,1;UBERON:0005175,9.91e-41,1;UBERON:0001774,9.91e-41,1;UBERON:0001103,9.91e-41,1;UBERON:0010084,9.91e-41,1;UBERON:0002146,1.48e-40,1;UBERON:0005623,1.48e-40,1;UBERON:0005090,3.81e-21,2;UBERON:0001630,3.81e-21,2;UBERON:0003978,1.60e-14,3;UBERON:0009751,1.60e-14,3;UBERON:0000946,1.60e-14,3;UBERON:0002523,1.60e-14,3;UBERON:0005983,1.60e-14,3;UBERON:0002165,1.60e-14,3;UBERON:0002062,1.60e-14,3;UBERON:0007280,1.60e-14,3;UBERON:0000956,1.70e-14,25;UBERON:0000203,1.70e-14,25;UBERON:0002791,1.33e-11,32;UBERON:0001869,1.33e-11,32;UBERON:0003528,5.49e-11,34;UBERON:0002020,5.49e-11,34;UBERON:0001893,5.49e-11,34;UBERON:0002780,2.74e-09,41;UBERON:0001890,2.74e-09,41;UBERON:0003080,2.74e-09,41;UBERON:0006240,2.74e-09,41;UBERON:0003075,2.69e-08,82;UBERON:0007284,2.69e-08,82;UBERON:0002346,6.09e-08,86;UBERON:0000073,2.17e-07,53;UBERON:0002616,2.17e-07,53;UBERON:0001049,4.88e-07,56;UBERON:0005068,4.88e-07,56;UBERON:0006241,4.88e-07,56;UBERON:0007135,4.88e-07,56;UBERON:0004797,5.70e-07,7 | |||
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|short_description=p25@RPN2 | |||
}} |
Revision as of 08:21, 12 September 2013
Short description: | p25@RPN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_25_at_RPN2_5end |
Coexpression cluster: | C545_Astrocyte_Neural_Neurons_parietal_neuroectodermal_occipital_temporal |
Association with transcript: | -268bp_to_ENST00000437329_5end |
EntrezGene: | RPN2 |
HGNC: | 10382 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.16e-117 | 3 |
oligodendrocyte | 3.85e-51 | 7 |
macroglial cell | 3.85e-51 | 7 |
astrocyte | 3.85e-51 | 7 |
oligodendrocyte precursor cell | 3.85e-51 | 7 |
glial cell (sensu Vertebrata) | 1.11e-21 | 15 |
glial cell | 1.11e-21 | 15 |
glioblast | 1.11e-21 | 15 |
glioblast (sensu Vertebrata) | 1.11e-21 | 15 |
neuron associated cell | 1.68e-19 | 17 |
neuron associated cell (sensu Vertebrata) | 1.68e-19 | 17 |
neural cell | 5.42e-14 | 25 |
migratory neural crest cell | 4.33e-09 | 41 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.