FFCP PHASE1:Mm9::chr11:46125785..46125840,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=76884|HGNC=|MCL_coexpression_id=1073|UniProt=Q5SQX6,E9Q245|association_with_transcript=0bp_to_ENSMUST00000093166,ENSMUST00000165599_5end|description=CAGE_peak_1_at_Cyfip2_5end|id=chr11:46125785..46125840,-|ontology_enrichment_celltype=CL:0000117!3.51e-10!23;CL:0000337!3.51e-10!23;CL:0000540!3.54e-10!33;CL:0000047!3.54e-10!33;CL:0000031!3.54e-10!33;CL:0000404!3.54e-10!33;CL:0000221!2.50e-09!44;CL:0000133!2.50e-09!44;CL:0002319!2.77e-09!43|ontology_enrichment_celltype_v019_2=CL:0000117,3.48e-10,23;CL:0000337,3.48e-10,23;CL:0000540,3.51e-10,33;CL:0000047,3.51e-10,33;CL:0000031,3.51e-10,33;CL:0000404,3.51e-10,33;CL:0000221,2.48e-09,44;CL:0000133,2.48e-09,44;CL:0002319,2.75e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.47e-24!73;UBERON:0005743!8.47e-24!73;UBERON:0000073!2.88e-23!75;UBERON:0001016!2.88e-23!75;UBERON:0007811!1.83e-21!86;UBERON:0001049!2.37e-19!52;UBERON:0005068!2.37e-19!52;UBERON:0006241!2.37e-19!52;UBERON:0007135!2.37e-19!52;UBERON:0000955!6.01e-19!50;UBERON:0006238!6.01e-19!50;UBERON:0000153!1.03e-18!94;UBERON:0002346!2.00e-18!71;UBERON:0003075!2.00e-18!71;UBERON:0007284!2.00e-18!71;UBERON:0002616!2.12e-18!49;UBERON:0004121!8.19e-18!102;UBERON:0000924!8.19e-18!102;UBERON:0006601!8.19e-18!102;UBERON:0000033!4.01e-17!63;UBERON:0002020!4.83e-15!34;UBERON:0003080!2.16e-14!40;UBERON:0003056!5.22e-14!49;UBERON:0002780!7.86e-14!39;UBERON:0001890!7.86e-14!39;UBERON:0006240!7.86e-14!39;UBERON:0002791!7.77e-13!29;UBERON:0003528!7.77e-13!29;UBERON:0001893!7.77e-13!29;UBERON:0000956!1.80e-09!21;UBERON:0001869!1.80e-09!21;UBERON:0000203!1.80e-09!21;UBERON:0002619!5.45e-08!17;UBERON:0000475!7.08e-08!200;UBERON:0002021!7.82e-08!10;UBERON:0000411!7.82e-08!10;UBERON:0001950!7.82e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.29e-24,73;UBERON:0001016,2.82e-23,75;UBERON:0000073,8.55e-21,54;UBERON:0001049,2.33e-19,52;UBERON:0005068,2.33e-19,52;UBERON:0006241,2.33e-19,52;UBERON:0007135,2.33e-19,52;UBERON:0002346,3.86e-19,64;UBERON:0003075,3.86e-19,64;UBERON:0007284,3.86e-19,64;UBERON:0004121,5.36e-18,95;UBERON:0000924,5.36e-18,95;UBERON:0006601,5.36e-18,95;UBERON:0000955,5.62e-17,47;UBERON:0006238,5.62e-17,47;UBERON:0002616,1.92e-16,46;UBERON:0010371,1.34e-15,73;UBERON:0002020,4.76e-15,34;UBERON:0003080,2.13e-14,40;UBERON:0003056,5.15e-14,49;UBERON:0002780,7.77e-14,39;UBERON:0001890,7.77e-14,39;UBERON:0006240,7.77e-14,39;UBERON:0003528,7.69e-13,29;UBERON:0002791,7.69e-13,29;UBERON:0001893,7.69e-13,29;UBERON:0010314,1.82e-12,92;UBERON:0000956,1.78e-09,21;UBERON:0001869,1.78e-09,21;UBERON:0000203,1.78e-09,21;UBERON:0002619,5.42e-08,17;UBERON:0002021,7.78e-08,10;UBERON:0000411,7.78e-08,10;UBERON:0001950,7.78e-08,10|phase1_expression=21.6200943591472,0.697950815278722,0,0,0,0.16787927191189,0.233612640595526,66.8858815427365,85.0363881796067,101.818068950067,16.950578854325,17.3903306609833,74.8147189799369,92.3159449544613,35.3096347524602,22.4747546802707,25.8837894907414,90.5376414578142,93.1007004182966,80.6340338416257,62.5918615511874,61.0639349885445,46.2323626775916,6.39969691173627,7.34109699414944,0,0,0,0.760093677825496,1.51218077855958,1.33038306393183,0,0,0,0,0,0,247.770725396249,139.077691325236,175.903977975196,244.704299020902,248.628556524874,235.472521220109,0.377690453926732,0.608261587317087,0,14.0830441982647,33.7938992389692,9.66619204031676,15.1655321277941,28.6972164331993,20.125359011096,87.7503029681961,121.860839857906,110.910953717013,0.257259436035947,0.286533439938757,0,85.7821794044695,68.7688273053643,91.905553508396,10.165335962074,12.450127145556,13.9484456178617,32.6325899647102,15.6305625288142,30.8588113833957,21.5162250980071,70.8200052066902,61.0226841259242,74.2447113570379,116.545601636752,92.7647871996777,58.673092823963,59.0408101472336,56.0723459832113,248.861891058618,253.842428113353,224.111932020859,74.7795251430199,69.6220967814337,71.8860451368329,191.240354315946,119.305673326716,171.134037510027,112.253491065467,103.646583621747,93.9453206959515,6.43672643332064,24.7119001549189,8.40607017234866,2.58127163094416,0.679971333707751,1.61910957491345,0,0,24.1564402626613,0,0,0,22.2532603247155,0,0,0,5.19578498426914,4.56047757855178,3.53867111510348,24.663718019317,116.26310975758,66.5020783010415,9.71517829890361,10.9607572192371,15.912469310668,13.7157602902887,17.8734834846271,38.5796435382104,2.47194967734374,4.33798070759735,90.2302762988872,15.8531512948461,59.8480515027667,48.4875253135222,7.45567044872489,194.406449215667,145.565461235351,10.4737392635522,28.515999632409,27.5955256256968,21.8560790565671,170.162166363879,238.815314671323,57.1727302113533,295.50134432687,245.231123579787,150.022968172002,166.297294644452,3.36069900706044,52.9973694798996,3.0326731012041,23.990371571058,9.23855145035196,16.7828536236435,18.9065236295617,19.7423311364787,29.459804132525,23.060469651273,28.7664294398367,37.5119887571573,9.7005596819779,14.3720620927543,11.2608719464927,5.2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| ||
|EntrezGene=76884 | |||
|HGNC= | |||
|MCL_coexpression_id=1073 | |||
|UniProt=Q5SQX6,E9Q245 | |||
|association_with_transcript=0bp_to_ENSMUST00000093166,ENSMUST00000165599_5end | |||
|description=CAGE_peak_1_at_Cyfip2_5end | |||
|id=chr11:46125785..46125840,- | |||
|ontology_enrichment_celltype=CL:0000117!3.51e-10!23;CL:0000337!3.51e-10!23;CL:0000540!3.54e-10!33;CL:0000047!3.54e-10!33;CL:0000031!3.54e-10!33;CL:0000404!3.54e-10!33;CL:0000221!2.50e-09!44;CL:0000133!2.50e-09!44;CL:0002319!2.77e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.48e-10,23;CL:0000337,3.48e-10,23;CL:0000540,3.51e-10,33;CL:0000047,3.51e-10,33;CL:0000031,3.51e-10,33;CL:0000404,3.51e-10,33;CL:0000221,2.48e-09,44;CL:0000133,2.48e-09,44;CL:0002319,2.75e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.47e-24!73;UBERON:0005743!8.47e-24!73;UBERON:0000073!2.88e-23!75;UBERON:0001016!2.88e-23!75;UBERON:0007811!1.83e-21!86;UBERON:0001049!2.37e-19!52;UBERON:0005068!2.37e-19!52;UBERON:0006241!2.37e-19!52;UBERON:0007135!2.37e-19!52;UBERON:0000955!6.01e-19!50;UBERON:0006238!6.01e-19!50;UBERON:0000153!1.03e-18!94;UBERON:0002346!2.00e-18!71;UBERON:0003075!2.00e-18!71;UBERON:0007284!2.00e-18!71;UBERON:0002616!2.12e-18!49;UBERON:0004121!8.19e-18!102;UBERON:0000924!8.19e-18!102;UBERON:0006601!8.19e-18!102;UBERON:0000033!4.01e-17!63;UBERON:0002020!4.83e-15!34;UBERON:0003080!2.16e-14!40;UBERON:0003056!5.22e-14!49;UBERON:0002780!7.86e-14!39;UBERON:0001890!7.86e-14!39;UBERON:0006240!7.86e-14!39;UBERON:0002791!7.77e-13!29;UBERON:0003528!7.77e-13!29;UBERON:0001893!7.77e-13!29;UBERON:0000956!1.80e-09!21;UBERON:0001869!1.80e-09!21;UBERON:0000203!1.80e-09!21;UBERON:0002619!5.45e-08!17;UBERON:0000475!7.08e-08!200;UBERON:0002021!7.82e-08!10;UBERON:0000411!7.82e-08!10;UBERON:0001950!7.82e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.29e-24,73;UBERON:0001016,2.82e-23,75;UBERON:0000073,8.55e-21,54;UBERON:0001049,2.33e-19,52;UBERON:0005068,2.33e-19,52;UBERON:0006241,2.33e-19,52;UBERON:0007135,2.33e-19,52;UBERON:0002346,3.86e-19,64;UBERON:0003075,3.86e-19,64;UBERON:0007284,3.86e-19,64;UBERON:0004121,5.36e-18,95;UBERON:0000924,5.36e-18,95;UBERON:0006601,5.36e-18,95;UBERON:0000955,5.62e-17,47;UBERON:0006238,5.62e-17,47;UBERON:0002616,1.92e-16,46;UBERON:0010371,1.34e-15,73;UBERON:0002020,4.76e-15,34;UBERON:0003080,2.13e-14,40;UBERON:0003056,5.15e-14,49;UBERON:0002780,7.77e-14,39;UBERON:0001890,7.77e-14,39;UBERON:0006240,7.77e-14,39;UBERON:0003528,7.69e-13,29;UBERON:0002791,7.69e-13,29;UBERON:0001893,7.69e-13,29;UBERON:0010314,1.82e-12,92;UBERON:0000956,1.78e-09,21;UBERON:0001869,1.78e-09,21;UBERON:0000203,1.78e-09,21;UBERON:0002619,5.42e-08,17;UBERON:0002021,7.78e-08,10;UBERON:0000411,7.78e-08,10;UBERON:0001950,7.78e-08,10 | |||
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| |||
|short_description=p1@Cyfip2 | |||
}} |
Revision as of 19:43, 12 September 2013
Short description: | p1@Cyfip2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cyfip2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1073 |
Association with transcript: | 0bp_to_ENSMUST00000093166, ENSMUST00000165599_5end |
EntrezGene: | Cyfip2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.48e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.48e-10 | 23 |
neuron | 3.51e-10 | 33 |
neuronal stem cell | 3.51e-10 | 33 |
neuroblast | 3.51e-10 | 33 |
electrically signaling cell | 3.51e-10 | 33 |
ectodermal cell | 2.48e-09 | 44 |
neurectodermal cell | 2.48e-09 | 44 |
neural cell | 2.75e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.29e-24 | 73 |
nervous system | 2.82e-23 | 75 |
regional part of nervous system | 8.55e-21 | 54 |
neural tube | 2.33e-19 | 52 |
neural rod | 2.33e-19 | 52 |
future spinal cord | 2.33e-19 | 52 |
neural keel | 2.33e-19 | 52 |
neurectoderm | 3.86e-19 | 64 |
neural plate | 3.86e-19 | 64 |
presumptive neural plate | 3.86e-19 | 64 |
ectoderm-derived structure | 5.36e-18 | 95 |
ectoderm | 5.36e-18 | 95 |
presumptive ectoderm | 5.36e-18 | 95 |
brain | 5.62e-17 | 47 |
future brain | 5.62e-17 | 47 |
regional part of brain | 1.92e-16 | 46 |
ecto-epithelium | 1.34e-15 | 73 |
gray matter | 4.76e-15 | 34 |
anterior neural tube | 2.13e-14 | 40 |
pre-chordal neural plate | 5.15e-14 | 49 |
regional part of forebrain | 7.77e-14 | 39 |
forebrain | 7.77e-14 | 39 |
future forebrain | 7.77e-14 | 39 |
brain grey matter | 7.69e-13 | 29 |
regional part of telencephalon | 7.69e-13 | 29 |
telencephalon | 7.69e-13 | 29 |
structure with developmental contribution from neural crest | 1.82e-12 | 92 |
cerebral cortex | 1.78e-09 | 21 |
cerebral hemisphere | 1.78e-09 | 21 |
pallium | 1.78e-09 | 21 |
regional part of cerebral cortex | 5.42e-08 | 17 |
occipital lobe | 7.78e-08 | 10 |
visual cortex | 7.78e-08 | 10 |
neocortex | 7.78e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.