FFCP PHASE1:Hg19::chr3:12800723..12800747,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55287|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25620|TSSclassifier=S|UniProt=|association_with_transcript=10bp_to_ENST00000435218_5end|coexpression_cluster_id=C1188|description=CAGE_peak_2_at_TMEM40_5end|id=chr3:12800723..12800747,-|ontology_enrichment_celltype=CL:0000066!1.04e-33!254;CL:0002076!3.29e-20!43;CL:0000223!1.48e-15!59;CL:0002368!1.57e-10!13;CL:0000076!3.97e-09!62;CL:0002251!5.15e-09!21;CL:0002159!6.28e-09!13;CL:0002077!2.42e-08!33;CL:0002202!5.83e-07!9;CL:0002632!5.83e-07!9|ontology_enrichment_celltype_v019=CL:0002076;9.00e-18;42!CL:0002368;4.77e-15;13!CL:0002159;1.82e-10;14!CL:0002202;8.79e-10;9!CL:0002632;8.79e-10;9!CL:0002251;1.93e-09;20!CL:0000244;1.60e-07;4!CL:0000731;1.60e-07;4!CL:0000622;3.39e-07;5|ontology_enrichment_celltype_v019_2=CL:0000066,3.57e-28,253;CL:0002076,1.04e-23,42;CL:0000223,7.23e-18,58;CL:0002368,4.38e-15,13;CL:0002159,1.83e-10,14;CL:0002202,8.15e-10,9;CL:0002632,8.15e-10,9;CL:0002251,1.68e-09,20;CL:0000076,3.04e-08,63;CL:0000244,1.60e-07,4;CL:0000731,1.60e-07,4;CL:0000622,3.28e-07,5|ontology_enrichment_development_v019=CL:0000223;6.92e-10;58|ontology_enrichment_disease=DOID:305!1.24e-12!106;DOID:1749!1.69e-09!14;DOID:0050687!1.68e-08!143|ontology_enrichment_disease_v019=DOID:1749;5.64e-12;14|ontology_enrichment_disease_v019_2=DOID:1749,6.13e-12,14;DOID:305,4.69e-07,106|ontology_enrichment_uberon=UBERON:0004119!7.48e-16!169;UBERON:0000925!7.48e-16!169;UBERON:0006595!7.48e-16!169;UBERON:0001004!1.98e-14!72;UBERON:0000065!7.62e-13!53;UBERON:0000077!6.57e-12!130;UBERON:0001007!3.93e-10!155;UBERON:0001555!3.93e-10!155;UBERON:0007026!3.93e-10!155;UBERON:0001041!4.84e-10!98;UBERON:0000072!7.58e-10!46;UBERON:0004921!1.89e-09!129;UBERON:0004185!1.89e-09!129;UBERON:0000464!2.04e-09!104;UBERON:0008947!3.63e-09!38;UBERON:0003258!3.63e-09!38;UBERON:0005631!2.35e-08!14;UBERON:0000158!2.35e-08!14;UBERON:0000161!5.90e-08!35;UBERON:0000466!1.30e-07!126|ontology_enrichment_uberon_v019=UBERON:0000365;2.32e-08;5!UBERON:0000178;2.37e-08;15!UBERON:0000179;2.37e-08;15!UBERON:0000463;2.37e-08;15!UBERON:0005911;2.73e-08;36!UBERON:0005631;3.62e-08;10!UBERON:0000158;3.62e-08;10!UBERON:0004807;4.21e-08;22!UBERON:0000486;8.30e-08;12!UBERON:0005178;9.55e-08;34!UBERON:0002224;9.55e-08;34!UBERON:0007196;1.10e-07;15!UBERON:0001558;1.10e-07;15!UBERON:0000065;3.97e-07;44!UBERON:0005181;6.78e-07;35!UBERON:0005910;7.89e-07;6!UBERON:0001004;9.54e-07;65|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.56e-14,160;UBERON:0000925,4.56e-14,160;UBERON:0006595,4.56e-14,160;UBERON:0001004,7.70e-14,74;UBERON:0005631,4.28e-12,14;UBERON:0000158,4.28e-12,14;UBERON:0000065,6.24e-12,54;UBERON:0003124,5.21e-09,7;UBERON:0000072,8.75e-09,47;UBERON:0005178,1.40e-08,34;UBERON:0002224,1.40e-08,34;UBERON:0001008,1.57e-08,48;UBERON:0000365,2.28e-08,5;UBERON:0000178,2.56e-08,15;UBERON:0000179,2.56e-08,15;UBERON:0000463,2.56e-08,15;UBERON:0005181,3.39e-08,35;UBERON:0000161,4.56e-08,36;UBERON:0006554,5.04e-08,47;UBERON:0001007,5.69e-08,145;UBERON:0001555,5.69e-08,145;UBERON:0007026,5.69e-08,145;UBERON:0007196,9.77e-08,15;UBERON:0001558,9.77e-08,15;UBERON:0008947,1.80e-07,38;UBERON:0003258,1.80e-07,38;UBERON:0000166,4.52e-07,22;UBERON:0005177,4.83e-07,101;UBERON:0005910,7.76e-07,6;UBERON:0003102,8.05e-07,99|phase1_expression=0,0,0,0,0,0,0,0,0.522371256399677,4.91467873003018,7.6758128476967,11.1405099786388,11.078213085595,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,2.75354993794233,0.383829398097213,0.77408061658038,147.107395916628,137.349898962882,42.1519571590138,0,0.284338464974843,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0.580418477257168,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,230.234622200887,125.325141661137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.183201743930407,0,0,143.474943154894,0,0,0,0,0.354668382198357,1.12135520028461,0,0,0,0,0,0,0,0,0,7.98660550162229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,334.534536825667,277.928296882061,216.824274114087,0,0,0.348581828608555,0.829288440122964,0.252320850875628,0,0,0,0,0,0,0.709840800239063,1.34867752062481,0.482022059766964,0.330881918197182,1.30727666455444,1.18635309555548,0.943819157121151,0.392442930250692,0.769494313892781,0,0,0,0,0,0,0.590789906681404,0,1.96781501668982,0,238.377619907535,184.338875342496,142.550082879693,102.587997235651,0,0,0,0,0,0,0,0,1.58040879591855,0.858486162094873,0,0,0,373.99799760724,243.238121631949,156.23615716111,113.291531219103,92.7122263859539,67.8587342122424,0,0,0,0,0,0.126995788584338,0,0,5.13217338068116,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55287 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25620 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=10bp_to_ENST00000435218_5end | |||
|coexpression_cluster_id=C1188 | |||
|description=CAGE_peak_2_at_TMEM40_5end | |||
|id=chr3:12800723..12800747,- | |||
|ontology_enrichment_celltype=CL:0000066!1.04e-33!254;CL:0002076!3.29e-20!43;CL:0000223!1.48e-15!59;CL:0002368!1.57e-10!13;CL:0000076!3.97e-09!62;CL:0002251!5.15e-09!21;CL:0002159!6.28e-09!13;CL:0002077!2.42e-08!33;CL:0002202!5.83e-07!9;CL:0002632!5.83e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;9.00e-18;42!CL:0002368;4.77e-15;13!CL:0002159;1.82e-10;14!CL:0002202;8.79e-10;9!CL:0002632;8.79e-10;9!CL:0002251;1.93e-09;20!CL:0000244;1.60e-07;4!CL:0000731;1.60e-07;4!CL:0000622;3.39e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.57e-28,253;CL:0002076,1.04e-23,42;CL:0000223,7.23e-18,58;CL:0002368,4.38e-15,13;CL:0002159,1.83e-10,14;CL:0002202,8.15e-10,9;CL:0002632,8.15e-10,9;CL:0002251,1.68e-09,20;CL:0000076,3.04e-08,63;CL:0000244,1.60e-07,4;CL:0000731,1.60e-07,4;CL:0000622,3.28e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;6.92e-10;58 | |||
|ontology_enrichment_disease=DOID:305!1.24e-12!106;DOID:1749!1.69e-09!14;DOID:0050687!1.68e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.64e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,6.13e-12,14;DOID:305,4.69e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.48e-16!169;UBERON:0000925!7.48e-16!169;UBERON:0006595!7.48e-16!169;UBERON:0001004!1.98e-14!72;UBERON:0000065!7.62e-13!53;UBERON:0000077!6.57e-12!130;UBERON:0001007!3.93e-10!155;UBERON:0001555!3.93e-10!155;UBERON:0007026!3.93e-10!155;UBERON:0001041!4.84e-10!98;UBERON:0000072!7.58e-10!46;UBERON:0004921!1.89e-09!129;UBERON:0004185!1.89e-09!129;UBERON:0000464!2.04e-09!104;UBERON:0008947!3.63e-09!38;UBERON:0003258!3.63e-09!38;UBERON:0005631!2.35e-08!14;UBERON:0000158!2.35e-08!14;UBERON:0000161!5.90e-08!35;UBERON:0000466!1.30e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;2.32e-08;5!UBERON:0000178;2.37e-08;15!UBERON:0000179;2.37e-08;15!UBERON:0000463;2.37e-08;15!UBERON:0005911;2.73e-08;36!UBERON:0005631;3.62e-08;10!UBERON:0000158;3.62e-08;10!UBERON:0004807;4.21e-08;22!UBERON:0000486;8.30e-08;12!UBERON:0005178;9.55e-08;34!UBERON:0002224;9.55e-08;34!UBERON:0007196;1.10e-07;15!UBERON:0001558;1.10e-07;15!UBERON:0000065;3.97e-07;44!UBERON:0005181;6.78e-07;35!UBERON:0005910;7.89e-07;6!UBERON:0001004;9.54e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.56e-14,160;UBERON:0000925,4.56e-14,160;UBERON:0006595,4.56e-14,160;UBERON:0001004,7.70e-14,74;UBERON:0005631,4.28e-12,14;UBERON:0000158,4.28e-12,14;UBERON:0000065,6.24e-12,54;UBERON:0003124,5.21e-09,7;UBERON:0000072,8.75e-09,47;UBERON:0005178,1.40e-08,34;UBERON:0002224,1.40e-08,34;UBERON:0001008,1.57e-08,48;UBERON:0000365,2.28e-08,5;UBERON:0000178,2.56e-08,15;UBERON:0000179,2.56e-08,15;UBERON:0000463,2.56e-08,15;UBERON:0005181,3.39e-08,35;UBERON:0000161,4.56e-08,36;UBERON:0006554,5.04e-08,47;UBERON:0001007,5.69e-08,145;UBERON:0001555,5.69e-08,145;UBERON:0007026,5.69e-08,145;UBERON:0007196,9.77e-08,15;UBERON:0001558,9.77e-08,15;UBERON:0008947,1.80e-07,38;UBERON:0003258,1.80e-07,38;UBERON:0000166,4.52e-07,22;UBERON:0005177,4.83e-07,101;UBERON:0005910,7.76e-07,6;UBERON:0003102,8.05e-07,99 | |||
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| |||
|short_description=p2@TMEM40 | |||
}} |
Revision as of 21:24, 12 September 2013
Short description: | p2@TMEM40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TMEM40_5end |
Coexpression cluster: | C1188_Urothelial_Gingival_Keratinocyte_Mallassezderived_Bronchial_Tracheal_Prostate |
Association with transcript: | 10bp_to_ENST00000435218_5end |
EntrezGene: | TMEM40 |
HGNC: | 25620 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.57e-28 | 253 |
endo-epithelial cell | 1.04e-23 | 42 |
endodermal cell | 7.23e-18 | 58 |
respiratory epithelial cell | 4.38e-15 | 13 |
general ecto-epithelial cell | 1.83e-10 | 14 |
epithelial cell of tracheobronchial tree | 8.15e-10 | 9 |
epithelial cell of lower respiratory tract | 8.15e-10 | 9 |
epithelial cell of alimentary canal | 1.68e-09 | 20 |
squamous epithelial cell | 3.04e-08 | 63 |
transitional epithelial cell | 1.60e-07 | 4 |
urothelial cell | 1.60e-07 | 4 |
acinar cell | 3.28e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.56e-14 | 160 |
endoderm | 4.56e-14 | 160 |
presumptive endoderm | 4.56e-14 | 160 |
respiratory system | 7.70e-14 | 74 |
extraembryonic membrane | 4.28e-12 | 14 |
membranous layer | 4.28e-12 | 14 |
respiratory tract | 6.24e-12 | 54 |
chorion | 5.21e-09 | 7 |
segment of respiratory tract | 8.75e-09 | 47 |
thoracic cavity element | 1.40e-08 | 34 |
thoracic cavity | 1.40e-08 | 34 |
renal system | 1.57e-08 | 48 |
urothelium | 2.28e-08 | 5 |
blood | 2.56e-08 | 15 |
haemolymphatic fluid | 2.56e-08 | 15 |
organism substance | 2.56e-08 | 15 |
thoracic segment organ | 3.39e-08 | 35 |
orifice | 4.56e-08 | 36 |
urinary system structure | 5.04e-08 | 47 |
digestive system | 5.69e-08 | 145 |
digestive tract | 5.69e-08 | 145 |
primitive gut | 5.69e-08 | 145 |
tracheobronchial tree | 9.77e-08 | 15 |
lower respiratory tract | 9.77e-08 | 15 |
respiratory primordium | 1.80e-07 | 38 |
endoderm of foregut | 1.80e-07 | 38 |
oral opening | 4.52e-07 | 22 |
trunk region element | 4.83e-07 | 101 |
transitional epithelium | 7.76e-07 | 6 |
surface structure | 8.05e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 6.13e-12 | 14 |
carcinoma | 4.69e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.