FFCP PHASE1:Mm9::chr13:51196572..51196600,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20729|HGNC=|UniProt=|association_with_transcript=-316bp_to_uc007qlz.1_5end|description=CAGE_peak_2_at_Spin1_5end|id=chr13:51196572..51196600,+|ontology_enrichment_celltype=CL:0000540!9.47e-12!33;CL:0000047!9.47e-12!33;CL:0000031!9.47e-12!33;CL:0000404!9.47e-12!33;CL:0000393!5.32e-10!39;CL:0000211!5.32e-10!39;CL:0000221!3.00e-09!44;CL:0000133!3.00e-09!44;CL:0000117!3.81e-09!23;CL:0000337!3.81e-09!23;CL:0002319!6.86e-09!43;CL:0000055!1.26e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.33e-13,33;CL:0000047,4.33e-13,33;CL:0000031,4.33e-13,33;CL:0000404,4.33e-13,33;CL:0000393,6.08e-11,39;CL:0000211,6.08e-11,39;CL:0000117,1.91e-10,23;CL:0000337,1.91e-10,23;CL:0000221,1.84e-09,44;CL:0000133,1.84e-09,44;CL:0002319,4.55e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.78e-24!73;UBERON:0005743!9.78e-24!73;UBERON:0000073!3.69e-22!75;UBERON:0001016!3.69e-22!75;UBERON:0002346!1.08e-20!71;UBERON:0003075!1.08e-20!71;UBERON:0007284!1.08e-20!71;UBERON:0001049!1.29e-19!52;UBERON:0005068!1.29e-19!52;UBERON:0006241!1.29e-19!52;UBERON:0007135!1.29e-19!52;UBERON:0004121!1.30e-19!102;UBERON:0000924!1.30e-19!102;UBERON:0006601!1.30e-19!102;UBERON:0003056!5.77e-18!49;UBERON:0003080!2.01e-17!40;UBERON:0000033!3.19e-17!63;UBERON:0002780!3.48e-17!39;UBERON:0001890!3.48e-17!39;UBERON:0006240!3.48e-17!39;UBERON:0000955!1.08e-16!50;UBERON:0006238!1.08e-16!50;UBERON:0002020!2.19e-16!34;UBERON:0002616!4.53e-16!49;UBERON:0002791!5.65e-14!29;UBERON:0003528!5.65e-14!29;UBERON:0001893!5.65e-14!29;UBERON:0000153!1.15e-13!94;UBERON:0007811!2.72e-12!86;UBERON:0000956!4.48e-10!21;UBERON:0001869!4.48e-10!21;UBERON:0000203!4.48e-10!21;UBERON:0002619!5.18e-08!17;UBERON:0002021!5.58e-07!10;UBERON:0000411!5.58e-07!10;UBERON:0001950!5.58e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.69e-25,73;UBERON:0002346,2.68e-24,64;UBERON:0003075,2.68e-24,64;UBERON:0007284,2.68e-24,64;UBERON:0001016,9.83e-24,75;UBERON:0010371,5.28e-22,73;UBERON:0004121,2.03e-21,95;UBERON:0000924,2.03e-21,95;UBERON:0006601,2.03e-21,95;UBERON:0001049,2.54e-21,52;UBERON:0005068,2.54e-21,52;UBERON:0006241,2.54e-21,52;UBERON:0007135,2.54e-21,52;UBERON:0000073,1.54e-20,54;UBERON:0003056,7.74e-20,49;UBERON:0003080,8.44e-19,40;UBERON:0000955,9.39e-19,47;UBERON:0006238,9.39e-19,47;UBERON:0002780,1.56e-18,39;UBERON:0001890,1.56e-18,39;UBERON:0006240,1.56e-18,39;UBERON:0002616,4.76e-18,46;UBERON:0002020,1.28e-17,34;UBERON:0010314,3.34e-15,92;UBERON:0003528,6.36e-15,29;UBERON:0002791,6.36e-15,29;UBERON:0001893,6.36e-15,29;UBERON:0000956,1.41e-10,21;UBERON:0001869,1.41e-10,21;UBERON:0000203,1.41e-10,21;UBERON:0002619,2.76e-08,17;UBERON:0002021,1.23e-07,10;UBERON:0000411,1.23e-07,10;UBERON:0001950,1.23e-07,10|phase1_expression=2.5623815536767,0.348975407639361,0,0,0.500895729946347,0.503637815735669,0.467225281191051,1.67860320474049,1.267098499365,0.936258105287974,1.02730780935303,0.797721589953364,0.856003649656029,1.57356724354195,0,0.202475267389826,0,1.73504190947031,1.7824876368746,0.84877930359606,1.9559956734746,0.595745707205312,1.30599894569468,0,1.14704640533585,0.57423196411502,0.430761996159075,0.861884930743556,0.190023419456374,0.504060259519861,0,1.90509202037889,0.61506478758457,15.8481681015439,0.866554859253824,0.997407872150954,0.408338712524738,0.418531630736908,0,0.523523743973798,0.588231488031014,0.683045484958446,0,1.25896817975577,1.31790010585369,1.28482726513177,1.56478268869608,1.09012578190223,0.659058548203415,0.777719596297134,0.839918529752175,2.87505128729943,1.17447824240415,1.45072428402269,1.68046899571232,1.02903774414379,0.573066879877513,0.515672092277442,1.82084814773638,3.70293685490423,3.80298842103708,0.677689064138264,0.889294796111139,0,0,0,0.898800331555214,1.15265491596466,3.83651565541367,3.64516033495565,2.73422449756797,1.71390590642282,4.19650227808066,6.00204916153275,4.79227355091182,1.83843757322004,0,1.78762273319263,2.4577045320999,4.2203612073662,3.65950574409639,3.12548022334056,1.95428099300967,2.8138130501584,2.75036845998258,3.53554302568401,4.41352210477219,6.71038004971082,0.37863096666592,0.302286240427142,0,0.860423876981386,2.03991400112325,0,0,0,0.280888840263504,0,0,0,2.67602497575693,0,2.54805239706646,0,1.73192832808971,0.506719730950197,1.01104889002957,0.11418387971906,0.258937883647172,0.890652834388949,2.25530924795977,0.913396434936424,1.15307748628029,0.904335843315735,1.64624189989987,0.879666139307728,0,0,0,0.161766849947409,0.220841518460394,0.484875253135222,0,1.75668478206928,0.41889341362691,0.255457055208591,1.55759661857696,0.599902730993408,0.254140454146129,2.09706895166752,6.40500843946077,11.1832373380449,4.86708096538374,4.09144731728529,4.1557608911912,4.38051410282946,1.83310854930569,1.11966273549084,1.51633655060205,0,2.08192708740326,2.5289231487682,2.52086981727489,1.9591626318643,2.78949646520444,2.0498195245576,1.87403449119458,1.03481348295606,3.44908788692548,4.34943984385984,3.16712023495108,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| ||
|EntrezGene=20729 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=-316bp_to_uc007qlz.1_5end | |||
|description=CAGE_peak_2_at_Spin1_5end | |||
|id=chr13:51196572..51196600,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.47e-12!33;CL:0000047!9.47e-12!33;CL:0000031!9.47e-12!33;CL:0000404!9.47e-12!33;CL:0000393!5.32e-10!39;CL:0000211!5.32e-10!39;CL:0000221!3.00e-09!44;CL:0000133!3.00e-09!44;CL:0000117!3.81e-09!23;CL:0000337!3.81e-09!23;CL:0002319!6.86e-09!43;CL:0000055!1.26e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.33e-13,33;CL:0000047,4.33e-13,33;CL:0000031,4.33e-13,33;CL:0000404,4.33e-13,33;CL:0000393,6.08e-11,39;CL:0000211,6.08e-11,39;CL:0000117,1.91e-10,23;CL:0000337,1.91e-10,23;CL:0000221,1.84e-09,44;CL:0000133,1.84e-09,44;CL:0002319,4.55e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.78e-24!73;UBERON:0005743!9.78e-24!73;UBERON:0000073!3.69e-22!75;UBERON:0001016!3.69e-22!75;UBERON:0002346!1.08e-20!71;UBERON:0003075!1.08e-20!71;UBERON:0007284!1.08e-20!71;UBERON:0001049!1.29e-19!52;UBERON:0005068!1.29e-19!52;UBERON:0006241!1.29e-19!52;UBERON:0007135!1.29e-19!52;UBERON:0004121!1.30e-19!102;UBERON:0000924!1.30e-19!102;UBERON:0006601!1.30e-19!102;UBERON:0003056!5.77e-18!49;UBERON:0003080!2.01e-17!40;UBERON:0000033!3.19e-17!63;UBERON:0002780!3.48e-17!39;UBERON:0001890!3.48e-17!39;UBERON:0006240!3.48e-17!39;UBERON:0000955!1.08e-16!50;UBERON:0006238!1.08e-16!50;UBERON:0002020!2.19e-16!34;UBERON:0002616!4.53e-16!49;UBERON:0002791!5.65e-14!29;UBERON:0003528!5.65e-14!29;UBERON:0001893!5.65e-14!29;UBERON:0000153!1.15e-13!94;UBERON:0007811!2.72e-12!86;UBERON:0000956!4.48e-10!21;UBERON:0001869!4.48e-10!21;UBERON:0000203!4.48e-10!21;UBERON:0002619!5.18e-08!17;UBERON:0002021!5.58e-07!10;UBERON:0000411!5.58e-07!10;UBERON:0001950!5.58e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.69e-25,73;UBERON:0002346,2.68e-24,64;UBERON:0003075,2.68e-24,64;UBERON:0007284,2.68e-24,64;UBERON:0001016,9.83e-24,75;UBERON:0010371,5.28e-22,73;UBERON:0004121,2.03e-21,95;UBERON:0000924,2.03e-21,95;UBERON:0006601,2.03e-21,95;UBERON:0001049,2.54e-21,52;UBERON:0005068,2.54e-21,52;UBERON:0006241,2.54e-21,52;UBERON:0007135,2.54e-21,52;UBERON:0000073,1.54e-20,54;UBERON:0003056,7.74e-20,49;UBERON:0003080,8.44e-19,40;UBERON:0000955,9.39e-19,47;UBERON:0006238,9.39e-19,47;UBERON:0002780,1.56e-18,39;UBERON:0001890,1.56e-18,39;UBERON:0006240,1.56e-18,39;UBERON:0002616,4.76e-18,46;UBERON:0002020,1.28e-17,34;UBERON:0010314,3.34e-15,92;UBERON:0003528,6.36e-15,29;UBERON:0002791,6.36e-15,29;UBERON:0001893,6.36e-15,29;UBERON:0000956,1.41e-10,21;UBERON:0001869,1.41e-10,21;UBERON:0000203,1.41e-10,21;UBERON:0002619,2.76e-08,17;UBERON:0002021,1.23e-07,10;UBERON:0000411,1.23e-07,10;UBERON:0001950,1.23e-07,10 | |||
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| |||
|short_description=p2@Spin1 | |||
}} |
Revision as of 00:43, 13 September 2013
Short description: | p2@Spin1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Spin1_5end |
Coexpression cluster: | NA |
Association with transcript: | -316bp_to_uc007qlz.1_5end |
EntrezGene: | Spin1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.33e-13 | 33 |
neuronal stem cell | 4.33e-13 | 33 |
neuroblast | 4.33e-13 | 33 |
electrically signaling cell | 4.33e-13 | 33 |
electrically responsive cell | 6.08e-11 | 39 |
electrically active cell | 6.08e-11 | 39 |
CNS neuron (sensu Vertebrata) | 1.91e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.91e-10 | 23 |
ectodermal cell | 1.84e-09 | 44 |
neurectodermal cell | 1.84e-09 | 44 |
neural cell | 4.55e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.69e-25 | 73 |
neurectoderm | 2.68e-24 | 64 |
neural plate | 2.68e-24 | 64 |
presumptive neural plate | 2.68e-24 | 64 |
nervous system | 9.83e-24 | 75 |
ecto-epithelium | 5.28e-22 | 73 |
ectoderm-derived structure | 2.03e-21 | 95 |
ectoderm | 2.03e-21 | 95 |
presumptive ectoderm | 2.03e-21 | 95 |
neural tube | 2.54e-21 | 52 |
neural rod | 2.54e-21 | 52 |
future spinal cord | 2.54e-21 | 52 |
neural keel | 2.54e-21 | 52 |
regional part of nervous system | 1.54e-20 | 54 |
pre-chordal neural plate | 7.74e-20 | 49 |
anterior neural tube | 8.44e-19 | 40 |
brain | 9.39e-19 | 47 |
future brain | 9.39e-19 | 47 |
regional part of forebrain | 1.56e-18 | 39 |
forebrain | 1.56e-18 | 39 |
future forebrain | 1.56e-18 | 39 |
regional part of brain | 4.76e-18 | 46 |
gray matter | 1.28e-17 | 34 |
structure with developmental contribution from neural crest | 3.34e-15 | 92 |
brain grey matter | 6.36e-15 | 29 |
regional part of telencephalon | 6.36e-15 | 29 |
telencephalon | 6.36e-15 | 29 |
cerebral cortex | 1.41e-10 | 21 |
cerebral hemisphere | 1.41e-10 | 21 |
pallium | 1.41e-10 | 21 |
regional part of cerebral cortex | 2.76e-08 | 17 |
occipital lobe | 1.23e-07 | 10 |
visual cortex | 1.23e-07 | 10 |
neocortex | 1.23e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.