FFCP PHASE1:Mm9::chr14:21365739..21365804,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19056|HGNC=|MCL_coexpression_id=1|UniProt=P48453,E0CZ78|association_with_transcript=0bp_to_ENSMUST00000159027,ENSMUST00000161445,NM_008914,uc007sjx.2,uc007sjy.2,uc007sjz.2_5end|description=CAGE_peak_1_at_Ppp3cb_5end|id=chr14:21365739..21365804,-|ontology_enrichment_celltype=CL:0000117!2.39e-13!23;CL:0000337!2.39e-13!23;CL:0000540!2.09e-09!33;CL:0000047!2.09e-09!33;CL:0000031!2.09e-09!33;CL:0000404!2.09e-09!33;CL:0000393!5.18e-07!39;CL:0000211!5.18e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,2.39e-13,23;CL:0000337,2.39e-13,23;CL:0000540,2.09e-09,33;CL:0000047,2.09e-09,33;CL:0000031,2.09e-09,33;CL:0000404,2.09e-09,33;CL:0000393,5.18e-07,39;CL:0000211,5.18e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!5.18e-18!52;UBERON:0005068!5.18e-18!52;UBERON:0006241!5.18e-18!52;UBERON:0007135!5.18e-18!52;UBERON:0002020!9.64e-18!34;UBERON:0007811!1.30e-17!86;UBERON:0000033!3.22e-17!63;UBERON:0000955!5.50e-17!50;UBERON:0006238!5.50e-17!50;UBERON:0001017!1.71e-16!73;UBERON:0005743!1.71e-16!73;UBERON:0002616!1.94e-16!49;UBERON:0000153!1.96e-16!94;UBERON:0000073!3.57e-16!75;UBERON:0001016!3.57e-16!75;UBERON:0002791!1.03e-14!29;UBERON:0003528!1.03e-14!29;UBERON:0001893!1.03e-14!29;UBERON:0003080!1.17e-13!40;UBERON:0003056!1.66e-13!49;UBERON:0002346!3.15e-13!71;UBERON:0003075!3.15e-13!71;UBERON:0007284!3.15e-13!71;UBERON:0002780!3.33e-13!39;UBERON:0001890!3.33e-13!39;UBERON:0006240!3.33e-13!39;UBERON:0004121!6.08e-12!102;UBERON:0000924!6.08e-12!102;UBERON:0006601!6.08e-12!102;UBERON:0000956!1.69e-10!21;UBERON:0001869!1.69e-10!21;UBERON:0000203!1.69e-10!21;UBERON:0002619!1.65e-08!17;UBERON:0002021!6.72e-08!10;UBERON:0000411!6.72e-08!10;UBERON:0001950!6.72e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.84e-19,54;UBERON:0001049,5.18e-18,52;UBERON:0005068,5.18e-18,52;UBERON:0006241,5.18e-18,52;UBERON:0007135,5.18e-18,52;UBERON:0002020,9.64e-18,34;UBERON:0002346,9.19e-17,64;UBERON:0003075,9.19e-17,64;UBERON:0007284,9.19e-17,64;UBERON:0001017,1.71e-16,73;UBERON:0001016,3.57e-16,75;UBERON:0000955,4.30e-15,47;UBERON:0006238,4.30e-15,47;UBERON:0010371,9.72e-15,73;UBERON:0003528,1.03e-14,29;UBERON:0002791,1.03e-14,29;UBERON:0001893,1.03e-14,29;UBERON:0002616,1.46e-14,46;UBERON:0004121,1.79e-14,95;UBERON:0000924,1.79e-14,95;UBERON:0006601,1.79e-14,95;UBERON:0003080,1.17e-13,40;UBERON:0003056,1.66e-13,49;UBERON:0002780,3.33e-13,39;UBERON:0001890,3.33e-13,39;UBERON:0006240,3.33e-13,39;UBERON:0010314,5.12e-13,92;UBERON:0000956,1.69e-10,21;UBERON:0001869,1.69e-10,21;UBERON:0000203,1.69e-10,21;UBERON:0002619,1.65e-08,17;UBERON:0002021,6.72e-08,10;UBERON:0000411,6.72e-08,10;UBERON:0001950,6.72e-08,10|phase1_expression=45.9627191190759,21.287499866001,23.2049612088663,29.0365642854557,21.0376206577466,32.5685787509066,18.9226238882376,33.3138174479267,15.4867594366833,9.12851652655775,28.2509647572083,25.6866351964983,38.5201642345213,36.0172057966269,51.9651228432434,48.1891136387786,72.0548734471991,48.2657112998104,43.6023898866249,42.014575528005,53.2370996345697,32.9645957986939,23.5079810225042,20.1590452719692,22.2527002635155,18.3754228516806,32.7379117080897,19.6078821744159,22.6127869153085,28.2273745331122,20.6209374909433,31.7515336729816,42.4394703433353,15.8481681015439,41.016930004681,35.7404487520759,34.9129599208651,48.1311375347444,55.4748094611898,52.3523743973798,42.352667138233,51.9114568568419,62.1453251879877,22.4096335996528,32.4406179902447,34.1396959020728,39.90195856175,27.0351193911754,30.0970070346226,32.8586529435539,28.4172435899486,23.0004102983955,34.395434241836,29.0144856804538,33.6093799142464,28.8130568360261,39.2550812716097,33.0030139057563,120.58061067232,97.334340186054,134.37225754331,33.2067641427749,30.2360230677787,20.2477436388315,23.7327927016074,26.9982443679518,32.0572118254693,28.0479362884735,104.933887656179,93.1540974488666,109.158654941367,140.254633342268,127.441148129081,101.789854147627,99.5834443879476,103.871722886932,142.049486489211,183.486704828415,151.916861390425,113.554093735697,125.246584091699,121.372815339725,123.957251556613,97.3579315354806,115.209878823715,139.653949514519,134.96835339755,136.257994898295,36.5757513799279,36.4254919714706,19.1310562543107,17.2084775396277,10.879541339324,21.5881276655127,27.9403859502498,36.7382047419815,51.9644354487482,39.7102651606875,24.1600984280668,26.1471285137652,38.8727838583638,78.2791512227339,150.335091426921,241.762679072133,16.6698101578635,21.2822286999083,20.2209778005913,34.9402671940324,47.3856327074324,33.6963655677152,25.6758283613881,17.0500667854799,33.2086316048724,29.2401922672088,28.691644541112,37.951310581562,19.7755974187499,43.8136051467332,34.4998115260451,56.7801643315406,64.9274064273557,49.4572758197927,11.1835056730873,96.324882216799,102.000546218153,29.8884754594052,38.2210247173886,20.9965955847693,36.0879444887504,100.509519040636,101.565133825735,150.659568183324,167.392820345162,156.753575343493,110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| ||
|EntrezGene=19056 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P48453,E0CZ78 | |||
|association_with_transcript=0bp_to_ENSMUST00000159027,ENSMUST00000161445,NM_008914,uc007sjx.2,uc007sjy.2,uc007sjz.2_5end | |||
|description=CAGE_peak_1_at_Ppp3cb_5end | |||
|id=chr14:21365739..21365804,- | |||
|ontology_enrichment_celltype=CL:0000117!2.39e-13!23;CL:0000337!2.39e-13!23;CL:0000540!2.09e-09!33;CL:0000047!2.09e-09!33;CL:0000031!2.09e-09!33;CL:0000404!2.09e-09!33;CL:0000393!5.18e-07!39;CL:0000211!5.18e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.39e-13,23;CL:0000337,2.39e-13,23;CL:0000540,2.09e-09,33;CL:0000047,2.09e-09,33;CL:0000031,2.09e-09,33;CL:0000404,2.09e-09,33;CL:0000393,5.18e-07,39;CL:0000211,5.18e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.18e-18!52;UBERON:0005068!5.18e-18!52;UBERON:0006241!5.18e-18!52;UBERON:0007135!5.18e-18!52;UBERON:0002020!9.64e-18!34;UBERON:0007811!1.30e-17!86;UBERON:0000033!3.22e-17!63;UBERON:0000955!5.50e-17!50;UBERON:0006238!5.50e-17!50;UBERON:0001017!1.71e-16!73;UBERON:0005743!1.71e-16!73;UBERON:0002616!1.94e-16!49;UBERON:0000153!1.96e-16!94;UBERON:0000073!3.57e-16!75;UBERON:0001016!3.57e-16!75;UBERON:0002791!1.03e-14!29;UBERON:0003528!1.03e-14!29;UBERON:0001893!1.03e-14!29;UBERON:0003080!1.17e-13!40;UBERON:0003056!1.66e-13!49;UBERON:0002346!3.15e-13!71;UBERON:0003075!3.15e-13!71;UBERON:0007284!3.15e-13!71;UBERON:0002780!3.33e-13!39;UBERON:0001890!3.33e-13!39;UBERON:0006240!3.33e-13!39;UBERON:0004121!6.08e-12!102;UBERON:0000924!6.08e-12!102;UBERON:0006601!6.08e-12!102;UBERON:0000956!1.69e-10!21;UBERON:0001869!1.69e-10!21;UBERON:0000203!1.69e-10!21;UBERON:0002619!1.65e-08!17;UBERON:0002021!6.72e-08!10;UBERON:0000411!6.72e-08!10;UBERON:0001950!6.72e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.84e-19,54;UBERON:0001049,5.18e-18,52;UBERON:0005068,5.18e-18,52;UBERON:0006241,5.18e-18,52;UBERON:0007135,5.18e-18,52;UBERON:0002020,9.64e-18,34;UBERON:0002346,9.19e-17,64;UBERON:0003075,9.19e-17,64;UBERON:0007284,9.19e-17,64;UBERON:0001017,1.71e-16,73;UBERON:0001016,3.57e-16,75;UBERON:0000955,4.30e-15,47;UBERON:0006238,4.30e-15,47;UBERON:0010371,9.72e-15,73;UBERON:0003528,1.03e-14,29;UBERON:0002791,1.03e-14,29;UBERON:0001893,1.03e-14,29;UBERON:0002616,1.46e-14,46;UBERON:0004121,1.79e-14,95;UBERON:0000924,1.79e-14,95;UBERON:0006601,1.79e-14,95;UBERON:0003080,1.17e-13,40;UBERON:0003056,1.66e-13,49;UBERON:0002780,3.33e-13,39;UBERON:0001890,3.33e-13,39;UBERON:0006240,3.33e-13,39;UBERON:0010314,5.12e-13,92;UBERON:0000956,1.69e-10,21;UBERON:0001869,1.69e-10,21;UBERON:0000203,1.69e-10,21;UBERON:0002619,1.65e-08,17;UBERON:0002021,6.72e-08,10;UBERON:0000411,6.72e-08,10;UBERON:0001950,6.72e-08,10 | |||
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| |||
|short_description=p1@Ppp3cb | |||
}} |
Revision as of 01:45, 13 September 2013
Short description: | p1@Ppp3cb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ppp3cb_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000159027, ENSMUST00000161445, NM_008914, uc007sjx.2, uc007sjy.2, uc007sjz.2_5end |
EntrezGene: | Ppp3cb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.39e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.39e-13 | 23 |
neuron | 2.09e-09 | 33 |
neuronal stem cell | 2.09e-09 | 33 |
neuroblast | 2.09e-09 | 33 |
electrically signaling cell | 2.09e-09 | 33 |
electrically responsive cell | 5.18e-07 | 39 |
electrically active cell | 5.18e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.84e-19 | 54 |
neural tube | 5.18e-18 | 52 |
neural rod | 5.18e-18 | 52 |
future spinal cord | 5.18e-18 | 52 |
neural keel | 5.18e-18 | 52 |
gray matter | 9.64e-18 | 34 |
neurectoderm | 9.19e-17 | 64 |
neural plate | 9.19e-17 | 64 |
presumptive neural plate | 9.19e-17 | 64 |
central nervous system | 1.71e-16 | 73 |
nervous system | 3.57e-16 | 75 |
brain | 4.30e-15 | 47 |
future brain | 4.30e-15 | 47 |
ecto-epithelium | 9.72e-15 | 73 |
brain grey matter | 1.03e-14 | 29 |
regional part of telencephalon | 1.03e-14 | 29 |
telencephalon | 1.03e-14 | 29 |
regional part of brain | 1.46e-14 | 46 |
ectoderm-derived structure | 1.79e-14 | 95 |
ectoderm | 1.79e-14 | 95 |
presumptive ectoderm | 1.79e-14 | 95 |
anterior neural tube | 1.17e-13 | 40 |
pre-chordal neural plate | 1.66e-13 | 49 |
regional part of forebrain | 3.33e-13 | 39 |
forebrain | 3.33e-13 | 39 |
future forebrain | 3.33e-13 | 39 |
structure with developmental contribution from neural crest | 5.12e-13 | 92 |
cerebral cortex | 1.69e-10 | 21 |
cerebral hemisphere | 1.69e-10 | 21 |
pallium | 1.69e-10 | 21 |
regional part of cerebral cortex | 1.65e-08 | 17 |
occipital lobe | 6.72e-08 | 10 |
visual cortex | 6.72e-08 | 10 |
neocortex | 6.72e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.