FFCP PHASE1:Mm9::chr19:7568735..7568754,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=109168|HGNC=|MCL_coexpression_id=1550|UniProt=Q91YH5|association_with_transcript=-173bp_to_ENSMUST00000025668,NM_146091,uc008glg.2_5end|description=CAGE_peak_3_at_Atl3_5end|id=chr19:7568735..7568754,+|ontology_enrichment_celltype=CL:0000988!7.31e-10!32;CL:0002032!7.31e-10!32;CL:0000037!7.31e-10!32;CL:0000566!7.31e-10!32;CL:0000837!7.31e-10!32;CL:0000838!2.72e-08!12;CL:0002031!5.88e-08!25;CL:0000084!1.26e-07!11;CL:0000827!1.26e-07!11;CL:0000542!1.64e-07!13;CL:0000051!1.64e-07!13;CL:0000791!4.69e-07!9;CL:0000789!4.69e-07!9;CL:0002420!4.69e-07!9;CL:0002419!4.69e-07!9;CL:0000790!4.69e-07!9|ontology_enrichment_celltype_v019_2=CL:0000988,1.86e-12,32;CL:0002032,1.86e-12,32;CL:0000037,1.86e-12,32;CL:0000837,1.86e-12,32;CL:0002031,1.87e-10,25;CL:0000838,1.89e-09,12;CL:0000084,1.14e-08,11;CL:0000827,1.14e-08,11;CL:0000542,2.95e-08,13;CL:0000051,2.95e-08,13;CL:0000791,5.29e-08,9;CL:0000789,5.29e-08,9;CL:0002420,5.29e-08,9;CL:0002419,5.29e-08,9;CL:0000790,5.29e-08,9;CL:0000624,2.22e-07,8;CL:0002320,6.37e-07,46;CL:0000134,6.37e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!1.18e-12!29;UBERON:0002193!3.83e-12!48;UBERON:0002390!9.40e-12!45;UBERON:0003061!9.40e-12!45;UBERON:0003081!3.35e-11!88;UBERON:0002405!7.11e-11!70;UBERON:0005057!5.77e-10!51;UBERON:0002370!5.99e-10!23;UBERON:0000974!5.99e-10!23;UBERON:0004807!5.99e-10!23;UBERON:0005058!5.99e-10!23;UBERON:0003351!5.99e-10!23;UBERON:0009113!5.99e-10!23;UBERON:0003295!5.99e-10!23;UBERON:0009722!5.99e-10!23;UBERON:0005562!5.99e-10!23;UBERON:0007690!5.99e-10!23;UBERON:0003408!2.24e-09!24;UBERON:0001048!4.14e-09!147;UBERON:0006562!5.31e-09!24;UBERON:0001557!5.31e-09!24;UBERON:0001042!5.31e-09!24;UBERON:0008814!5.31e-09!24;UBERON:0009145!5.31e-09!24;UBERON:0000926!8.76e-09!193;UBERON:0004120!8.76e-09!193;UBERON:0006603!8.76e-09!193;UBERON:0000065!8.79e-08!41;UBERON:0001004!1.75e-07!42|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.73e-16,45;UBERON:0003061,4.73e-16,45;UBERON:0002193,5.91e-16,48;UBERON:0002405,5.91e-16,48;UBERON:0004177,1.42e-15,29;UBERON:0005057,1.42e-15,29;UBERON:0003081,1.77e-12,87;UBERON:0002370,2.23e-12,23;UBERON:0000974,2.23e-12,23;UBERON:0004807,2.23e-12,23;UBERON:0005058,2.23e-12,23;UBERON:0003351,2.23e-12,23;UBERON:0009113,2.23e-12,23;UBERON:0003295,2.23e-12,23;UBERON:0009722,2.23e-12,23;UBERON:0005562,2.23e-12,23;UBERON:0007690,2.23e-12,23;UBERON:0006562,2.05e-11,24;UBERON:0003408,2.05e-11,24;UBERON:0001557,2.05e-11,24;UBERON:0001042,2.05e-11,24;UBERON:0008814,2.05e-11,24;UBERON:0009145,2.05e-11,24;UBERON:0001048,3.41e-11,134;UBERON:0000077,3.83e-11,35;UBERON:0000065,9.29e-10,41;UBERON:0001041,3.19e-09,80;UBERON:0001004,3.26e-09,42;UBERON:0000153,3.62e-09,43;UBERON:0000072,5.24e-09,27;UBERON:0007811,7.04e-09,36;UBERON:0000926,7.17e-09,120;UBERON:0004120,7.17e-09,120;UBERON:0006603,7.17e-09,120;UBERON:0005911,6.25e-07,69;UBERON:0002384,6.37e-07,46|phase1_expression=1.12104192973356,0.697950815278722,0,0.30246421130683,0,0.33575854382378,0.467225281191051,8.00564605337773,10.8407316056783,8.66038747391376,11.6428218393343,11.7265073723145,7.36163138704185,6.20684857174882,3.66420737997229,3.84703008040669,7.69518065940961,12.3030244489713,12.7516423253337,9.33657233955666,0.765389611359628,2.18440092641948,2.08959831311148,0.95995453676044,1.14704640533585,0,0,0,0.570070258369122,0.756090389279792,0.886922042621219,1.90509202037889,2.46025915033828,0,0.577703239502549,0.498703936075477,1.22501613757421,1.25559489221072,0.7813353445238,1.57057123192139,1.76469446409304,2.04913645487534,0,0.251793635951155,0.101376931219515,0.367093504323363,0,0.436050312760893,0.439372365468944,0.194429899074283,0.419959264876088,0,10.0669563634642,6.5282592781021,5.37750078627942,0,1.14613375975503,0,0.202316460859598,0,0,0.338844532069132,0,0.449949858640699,0,0,0.299600110518405,0,0.414758449233911,0.810035629990144,0.630974884054146,0,0.220868540951614,0.489963196859816,0.958454710182364,1.83843757322004,1.10115880999389,0.127687338085188,0.153606533256243,0.263772575460388,0.274462930807229,0.52091337055676,0.279182999001381,0,0.45839474333043,0.294628585473668,0.142371680799103,0.372798891650601,1.28734528666413,1.058001841495,0.869593466105033,1.72084775396277,1.3599426674155,0.539703191637817,0,0,0.421333260395256,1.02258193546835,1.03914401841148,0.35333957451034,0.704217098883403,1.28326477414318,0,0,0.649473123033642,0,0,0.5709193985953,8.54495016035667,0.29688427812965,1.21439728736295,1.52232739156071,0.922461989024234,0.452167921657868,1.99900802130698,1.38233250462643,0.494389935468748,1.01219549843938,4.42305275974937,2.10296904931632,3.09178125844551,1.93950101254089,0,0,0,0.255457055208591,3.71426885968353,2.99951365496704,2.92261522268049,0.149790639404823,0.457500602818626,0.251308704225729,0,0,0.41557608911912,0.162241263067758,0.407357455401265,2.73695335342205,0.505445516867349,0.210441855886474,1.69156575851515,1.14951052216736,1.0803727788321,1.2056385426857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| ||
|EntrezGene=109168 | |||
|HGNC= | |||
|MCL_coexpression_id=1550 | |||
|UniProt=Q91YH5 | |||
|association_with_transcript=-173bp_to_ENSMUST00000025668,NM_146091,uc008glg.2_5end | |||
|description=CAGE_peak_3_at_Atl3_5end | |||
|id=chr19:7568735..7568754,+ | |||
|ontology_enrichment_celltype=CL:0000988!7.31e-10!32;CL:0002032!7.31e-10!32;CL:0000037!7.31e-10!32;CL:0000566!7.31e-10!32;CL:0000837!7.31e-10!32;CL:0000838!2.72e-08!12;CL:0002031!5.88e-08!25;CL:0000084!1.26e-07!11;CL:0000827!1.26e-07!11;CL:0000542!1.64e-07!13;CL:0000051!1.64e-07!13;CL:0000791!4.69e-07!9;CL:0000789!4.69e-07!9;CL:0002420!4.69e-07!9;CL:0002419!4.69e-07!9;CL:0000790!4.69e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.86e-12,32;CL:0002032,1.86e-12,32;CL:0000037,1.86e-12,32;CL:0000837,1.86e-12,32;CL:0002031,1.87e-10,25;CL:0000838,1.89e-09,12;CL:0000084,1.14e-08,11;CL:0000827,1.14e-08,11;CL:0000542,2.95e-08,13;CL:0000051,2.95e-08,13;CL:0000791,5.29e-08,9;CL:0000789,5.29e-08,9;CL:0002420,5.29e-08,9;CL:0002419,5.29e-08,9;CL:0000790,5.29e-08,9;CL:0000624,2.22e-07,8;CL:0002320,6.37e-07,46;CL:0000134,6.37e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.18e-12!29;UBERON:0002193!3.83e-12!48;UBERON:0002390!9.40e-12!45;UBERON:0003061!9.40e-12!45;UBERON:0003081!3.35e-11!88;UBERON:0002405!7.11e-11!70;UBERON:0005057!5.77e-10!51;UBERON:0002370!5.99e-10!23;UBERON:0000974!5.99e-10!23;UBERON:0004807!5.99e-10!23;UBERON:0005058!5.99e-10!23;UBERON:0003351!5.99e-10!23;UBERON:0009113!5.99e-10!23;UBERON:0003295!5.99e-10!23;UBERON:0009722!5.99e-10!23;UBERON:0005562!5.99e-10!23;UBERON:0007690!5.99e-10!23;UBERON:0003408!2.24e-09!24;UBERON:0001048!4.14e-09!147;UBERON:0006562!5.31e-09!24;UBERON:0001557!5.31e-09!24;UBERON:0001042!5.31e-09!24;UBERON:0008814!5.31e-09!24;UBERON:0009145!5.31e-09!24;UBERON:0000926!8.76e-09!193;UBERON:0004120!8.76e-09!193;UBERON:0006603!8.76e-09!193;UBERON:0000065!8.79e-08!41;UBERON:0001004!1.75e-07!42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.73e-16,45;UBERON:0003061,4.73e-16,45;UBERON:0002193,5.91e-16,48;UBERON:0002405,5.91e-16,48;UBERON:0004177,1.42e-15,29;UBERON:0005057,1.42e-15,29;UBERON:0003081,1.77e-12,87;UBERON:0002370,2.23e-12,23;UBERON:0000974,2.23e-12,23;UBERON:0004807,2.23e-12,23;UBERON:0005058,2.23e-12,23;UBERON:0003351,2.23e-12,23;UBERON:0009113,2.23e-12,23;UBERON:0003295,2.23e-12,23;UBERON:0009722,2.23e-12,23;UBERON:0005562,2.23e-12,23;UBERON:0007690,2.23e-12,23;UBERON:0006562,2.05e-11,24;UBERON:0003408,2.05e-11,24;UBERON:0001557,2.05e-11,24;UBERON:0001042,2.05e-11,24;UBERON:0008814,2.05e-11,24;UBERON:0009145,2.05e-11,24;UBERON:0001048,3.41e-11,134;UBERON:0000077,3.83e-11,35;UBERON:0000065,9.29e-10,41;UBERON:0001041,3.19e-09,80;UBERON:0001004,3.26e-09,42;UBERON:0000153,3.62e-09,43;UBERON:0000072,5.24e-09,27;UBERON:0007811,7.04e-09,36;UBERON:0000926,7.17e-09,120;UBERON:0004120,7.17e-09,120;UBERON:0006603,7.17e-09,120;UBERON:0005911,6.25e-07,69;UBERON:0002384,6.37e-07,46 | |||
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| |||
|short_description=p3@Atl3 | |||
}} |
Revision as of 18:25, 13 September 2013
Short description: | p3@Atl3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Atl3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1550 |
Association with transcript: | -173bp_to_ENSMUST00000025668, NM_146091, uc008glg.2_5end |
EntrezGene: | Atl3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.86e-12 | 32 |
hematopoietic oligopotent progenitor cell | 1.86e-12 | 32 |
hematopoietic stem cell | 1.86e-12 | 32 |
hematopoietic multipotent progenitor cell | 1.86e-12 | 32 |
hematopoietic lineage restricted progenitor cell | 1.87e-10 | 25 |
lymphoid lineage restricted progenitor cell | 1.89e-09 | 12 |
T cell | 1.14e-08 | 11 |
pro-T cell | 1.14e-08 | 11 |
lymphocyte | 2.95e-08 | 13 |
common lymphoid progenitor | 2.95e-08 | 13 |
mature alpha-beta T cell | 5.29e-08 | 9 |
alpha-beta T cell | 5.29e-08 | 9 |
immature T cell | 5.29e-08 | 9 |
mature T cell | 5.29e-08 | 9 |
immature alpha-beta T cell | 5.29e-08 | 9 |
CD4-positive, alpha-beta T cell | 2.22e-07 | 8 |
connective tissue cell | 6.37e-07 | 46 |
mesenchymal cell | 6.37e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.