FFCP PHASE1:Mm9::chr2:119625310..119625328,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22174|HGNC=|MCL_coexpression_id=2326|UniProt=P55144|association_with_transcript=60bp_to_ENSMUST00000028763,NM_019392,uc008luq.1_5end|description=CAGE_peak_4_at_Tyro3_5end|id=chr2:119625310..119625328,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.10e-14!75;UBERON:0001016!8.10e-14!75;UBERON:0004121!9.88e-14!102;UBERON:0000924!9.88e-14!102;UBERON:0006601!9.88e-14!102;UBERON:0001017!1.36e-13!73;UBERON:0005743!1.36e-13!73;UBERON:0000955!2.19e-11!50;UBERON:0006238!2.19e-11!50;UBERON:0002616!8.61e-11!49;UBERON:0001049!1.23e-10!52;UBERON:0005068!1.23e-10!52;UBERON:0006241!1.23e-10!52;UBERON:0007135!1.23e-10!52;UBERON:0000033!2.17e-09!63;UBERON:0002021!1.86e-08!10;UBERON:0000411!1.86e-08!10;UBERON:0001950!1.86e-08!10;UBERON:0002020!5.04e-08!34;UBERON:0003080!7.29e-08!40;UBERON:0002346!1.00e-07!71;UBERON:0003075!1.00e-07!71;UBERON:0007284!1.00e-07!71;UBERON:0002791!1.30e-07!29;UBERON:0003528!1.30e-07!29;UBERON:0001893!1.30e-07!29;UBERON:0002780!1.75e-07!39;UBERON:0001890!1.75e-07!39;UBERON:0006240!1.75e-07!39;UBERON:0000956!5.31e-07!21;UBERON:0001869!5.31e-07!21;UBERON:0000203!5.31e-07!21;UBERON:0002619!7.84e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.78e-17,54;UBERON:0001017,2.92e-16,73;UBERON:0000955,9.44e-16,47;UBERON:0006238,9.44e-16,47;UBERON:0001016,1.53e-15,75;UBERON:0001049,1.58e-15,52;UBERON:0005068,1.58e-15,52;UBERON:0006241,1.58e-15,52;UBERON:0007135,1.58e-15,52;UBERON:0002021,2.20e-15,10;UBERON:0000411,2.20e-15,10;UBERON:0001950,2.20e-15,10;UBERON:0002616,1.11e-14,46;UBERON:0004121,2.00e-14,95;UBERON:0000924,2.00e-14,95;UBERON:0006601,2.00e-14,95;UBERON:0010371,4.62e-13,73;UBERON:0002346,5.34e-12,64;UBERON:0003075,5.34e-12,64;UBERON:0007284,5.34e-12,64;UBERON:0003528,4.38e-11,29;UBERON:0002791,4.38e-11,29;UBERON:0001893,4.38e-11,29;UBERON:0002020,7.27e-11,34;UBERON:0003080,7.40e-11,40;UBERON:0002780,3.57e-10,39;UBERON:0001890,3.57e-10,39;UBERON:0006240,3.57e-10,39;UBERON:0002619,1.44e-09,17;UBERON:0000956,1.03e-08,21;UBERON:0001869,1.03e-08,21;UBERON:0000203,1.03e-08,21;UBERON:0000473,5.62e-08,14;UBERON:0003056,9.17e-08,49;UBERON:0003135,2.75e-07,15|phase1_expression=0.480446541314382,0,0.454999239389536,0,0.500895729946347,0,0,0,0.422366166455,0.468129052643987,0,0.159544317990673,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.595303031057488,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0.550640256485045,1.56478268869608,0,0.439372365468944,0.194429899074283,0,2.87505128729943,0,0,0,0.514518872071894,0,0,0,0,0.633831403506179,0.338844532069132,0,0,0,0,1.19840044207362,0.768436610643109,0.207379224616955,0.270011876663381,0.210324961351382,1.14260393761521,0.883474163806454,0.367472397644862,0.191690942036473,0,1.10115880999389,1.40456071893706,1.68967186581868,0,0.182975287204819,0,3.35019598801657,1.12552522006336,1.5279824777681,0,1.42371680799103,0.372798891650601,0.454357159999104,0.377857800533928,0,0,0,0,0,0,0.702222100658759,0.170430322578058,0,0.35333957451034,0.845060518660083,0,0,0,0.216491041011214,0.506719730950197,0.505524445014783,0.45673551887624,0,0,0.173485326766136,0.304465478312141,0.230615497256059,0.150722640552623,0.352766121407114,0,0.494389935468748,0,0,0.323533699894818,0,0,1.86391761218122,4.9772735491963,2.72280718857492,0.255457055208591,0,0,0,1.49790639404823,6.40500843946077,1.38219787324151,9.73416193076748,11.7629110371952,3.74018480207208,4.2182728397617,0.611036183101898,0,0,0,0,0,0.180062129805349,0.30140963567143,0.136072998302656,0,0.468508622798644,0.258703370739016,0.646703978798527,0,0,0.219195732427575,1.11218899690239,1.74126083261083,1.02891068203972,0.59710280045548,0,0,0,0,0,0,0,0,0.308534225774757,0,0,0.116765342367169,0.16455984991348,0.164167464079095,0.0810688095458557,0,0,0.134206418760372,3.78521907415429,0.308713837137853,1.98251269790279,0,0.426576501070468,0.696710015581316,0.515469845288373,0.201683524623343,0,0.380451252225118,0.949058123089023,0.494096864172033,0,0.198956472041151,0.19496408711912,1.79763881730844,0.216138049874694,0.199141273254367,0.189667900953082,0.228497025219458,0,0,0.193952487167626,0.210407459670956,0.379419222745544,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.554259570499814,0.37898282354097,0,0,0.469380496577004,0,0.238043640886014,0.585400943573396,0.630540576424764,0,0,0.163863314715738,0,0.433947175744535,0,0,1.47529281905711,0.551873492609465,2.24770825982909,2.69586879162067,0.163934945376675,0.252470927204373,0.94652465824877,0,1.72338718186239,0.477937595905104,0.445597348164788,0.283076530788832,0.404810701674894,0.876767573733936,1.18586333383957,9.3183181762324,0.709700426041343,0.712262414669021,0.488660878060728,0.494910368917606,0,0.242780636154981,0.302323556964751,0,0,0,0.516856586336442,0,0,0.632073515871632,1.05418608574999,0,1.02131881726136,0,0.258717367565509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| ||
|EntrezGene=22174 | |||
|HGNC= | |||
|MCL_coexpression_id=2326 | |||
|UniProt=P55144 | |||
|association_with_transcript=60bp_to_ENSMUST00000028763,NM_019392,uc008luq.1_5end | |||
|description=CAGE_peak_4_at_Tyro3_5end | |||
|id=chr2:119625310..119625328,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.10e-14!75;UBERON:0001016!8.10e-14!75;UBERON:0004121!9.88e-14!102;UBERON:0000924!9.88e-14!102;UBERON:0006601!9.88e-14!102;UBERON:0001017!1.36e-13!73;UBERON:0005743!1.36e-13!73;UBERON:0000955!2.19e-11!50;UBERON:0006238!2.19e-11!50;UBERON:0002616!8.61e-11!49;UBERON:0001049!1.23e-10!52;UBERON:0005068!1.23e-10!52;UBERON:0006241!1.23e-10!52;UBERON:0007135!1.23e-10!52;UBERON:0000033!2.17e-09!63;UBERON:0002021!1.86e-08!10;UBERON:0000411!1.86e-08!10;UBERON:0001950!1.86e-08!10;UBERON:0002020!5.04e-08!34;UBERON:0003080!7.29e-08!40;UBERON:0002346!1.00e-07!71;UBERON:0003075!1.00e-07!71;UBERON:0007284!1.00e-07!71;UBERON:0002791!1.30e-07!29;UBERON:0003528!1.30e-07!29;UBERON:0001893!1.30e-07!29;UBERON:0002780!1.75e-07!39;UBERON:0001890!1.75e-07!39;UBERON:0006240!1.75e-07!39;UBERON:0000956!5.31e-07!21;UBERON:0001869!5.31e-07!21;UBERON:0000203!5.31e-07!21;UBERON:0002619!7.84e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.78e-17,54;UBERON:0001017,2.92e-16,73;UBERON:0000955,9.44e-16,47;UBERON:0006238,9.44e-16,47;UBERON:0001016,1.53e-15,75;UBERON:0001049,1.58e-15,52;UBERON:0005068,1.58e-15,52;UBERON:0006241,1.58e-15,52;UBERON:0007135,1.58e-15,52;UBERON:0002021,2.20e-15,10;UBERON:0000411,2.20e-15,10;UBERON:0001950,2.20e-15,10;UBERON:0002616,1.11e-14,46;UBERON:0004121,2.00e-14,95;UBERON:0000924,2.00e-14,95;UBERON:0006601,2.00e-14,95;UBERON:0010371,4.62e-13,73;UBERON:0002346,5.34e-12,64;UBERON:0003075,5.34e-12,64;UBERON:0007284,5.34e-12,64;UBERON:0003528,4.38e-11,29;UBERON:0002791,4.38e-11,29;UBERON:0001893,4.38e-11,29;UBERON:0002020,7.27e-11,34;UBERON:0003080,7.40e-11,40;UBERON:0002780,3.57e-10,39;UBERON:0001890,3.57e-10,39;UBERON:0006240,3.57e-10,39;UBERON:0002619,1.44e-09,17;UBERON:0000956,1.03e-08,21;UBERON:0001869,1.03e-08,21;UBERON:0000203,1.03e-08,21;UBERON:0000473,5.62e-08,14;UBERON:0003056,9.17e-08,49;UBERON:0003135,2.75e-07,15 | |||
|phase1_expression=0.480446541314382,0,0.454999239389536,0,0.500895729946347,0,0,0,0.422366166455,0.468129052643987,0,0.159544317990673,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0.595303031057488,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0.550640256485045,1.56478268869608,0,0.439372365468944,0.194429899074283,0,2.87505128729943,0,0,0,0.514518872071894,0,0,0,0,0.633831403506179,0.338844532069132,0,0,0,0,1.19840044207362,0.768436610643109,0.207379224616955,0.270011876663381,0.210324961351382,1.14260393761521,0.883474163806454,0.367472397644862,0.191690942036473,0,1.10115880999389,1.40456071893706,1.68967186581868,0,0.182975287204819,0,3.35019598801657,1.12552522006336,1.5279824777681,0,1.42371680799103,0.372798891650601,0.454357159999104,0.377857800533928,0,0,0,0,0,0,0.702222100658759,0.170430322578058,0,0.35333957451034,0.845060518660083,0,0,0,0.216491041011214,0.506719730950197,0.505524445014783,0.45673551887624,0,0,0.173485326766136,0.304465478312141,0.230615497256059,0.150722640552623,0.352766121407114,0,0.494389935468748,0,0,0.323533699894818,0,0,1.86391761218122,4.9772735491963,2.72280718857492,0.255457055208591,0,0,0,1.49790639404823,6.40500843946077,1.38219787324151,9.73416193076748,11.7629110371952,3.74018480207208,4.2182728397617,0.611036183101898,0,0,0,0,0,0.180062129805349,0.30140963567143,0.136072998302656,0,0.468508622798644,0.258703370739016,0.646703978798527,0,0,0.219195732427575,1.11218899690239,1.74126083261083,1.02891068203972,0.59710280045548,0,0,0,0,0,0,0,0,0.308534225774757,0,0,0.116765342367169,0.16455984991348,0.164167464079095,0.0810688095458557,0,0,0.134206418760372,3.78521907415429,0.308713837137853,1.98251269790279,0,0.426576501070468,0.696710015581316,0.515469845288373,0.201683524623343,0,0.380451252225118,0.949058123089023,0.494096864172033,0,0.198956472041151,0.19496408711912,1.79763881730844,0.216138049874694,0.199141273254367,0.189667900953082,0.228497025219458,0,0,0.193952487167626,0.210407459670956,0.379419222745544,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.554259570499814,0.37898282354097,0,0,0.469380496577004,0,0.238043640886014,0.585400943573396,0.630540576424764,0,0,0.163863314715738,0,0.433947175744535,0,0,1.47529281905711,0.551873492609465,2.24770825982909,2.69586879162067,0.163934945376675,0.252470927204373,0.94652465824877,0,1.72338718186239,0.477937595905104,0.445597348164788,0.283076530788832,0.404810701674894,0.876767573733936,1.18586333383957,9.3183181762324,0.709700426041343,0.712262414669021,0.488660878060728,0.494910368917606,0,0.242780636154981,0.302323556964751,0,0,0,0.516856586336442,0,0,0.632073515871632,1.05418608574999,0,1.02131881726136,0,0.258717367565509,0.428674070063185,0.177340233642274,0.178368817602071,0.329098041204242,0,0.469343416127421,0.21183207086382,0.220528398054962,0.8244312647074,1.45317984026315,0.965006798850494,2.02932984805332,1.47726809770555,0.291480836629851,2.78137953015765,0,0.206386867963223,0,0,0.136694227721025,0,0,0,0.138199973804424,1.90934123603023,0.158167996790568,0.406638934253697,1.62008011232702,1.67270636811575,1.74690050996942,1.88810084938749,1.65306911450672,4.18809507174447,0.129614973291793,0,0.56369293868419,2.8408143748356,2.81279433777066,2.72231663681667,1.80823752868824,3.04121025883401,4.3422178298929,6.38001485735356,3.46035836604846,1.20792060413003,1.44015003128933,0,0,0.205421914329655,0.129920822977795,0.179026695667481,0,0,0,0.100966449948148,0.0762068066549998,0,0.0974578807397524,0,0,2.49403421976732,0,0.179427713218951,0.167884616364078,1.54551675225752,0.93841237725591,0.549454872801795,4.50173596066038,0,7.34177395402186,4.60325236507177,9.73922372846974,3.78077001156113,7.53590771747707,4.5323633843382,14.1754725048679,13.9599572999508,12.6879874515577,12.9440077937955,0,0,0,0.486213434136588,0,0.183843508450014,0.666740183404846,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0.187283014939765,0.0640251524048693,0.229741875822453,0,0.463537303779422,0.77163688185482,0,0.588795680537589,0,0.177475806159338,0,0.726732083161643,0.188218760830661,0.0846146078916765,0,0.263069711437843,0.135804113845862,0,0.474540072496697,0.29551344712669,0.409231043169689,0.309873682371932,1.35034627686799,1.24905288968973,0.467863216890817,1.07435527024149,0.57386499620653,0.441182838239031,0.695603506861264 | |||
|short_description=p4@Tyro3 | |||
}} |
Revision as of 21:47, 13 September 2013
Short description: | p4@Tyro3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Tyro3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2326 |
Association with transcript: | 60bp_to_ENSMUST00000028763, NM_019392, uc008luq.1_5end |
EntrezGene: | Tyro3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 8.78e-17 | 54 |
central nervous system | 2.92e-16 | 73 |
brain | 9.44e-16 | 47 |
future brain | 9.44e-16 | 47 |
nervous system | 1.53e-15 | 75 |
neural tube | 1.58e-15 | 52 |
neural rod | 1.58e-15 | 52 |
future spinal cord | 1.58e-15 | 52 |
neural keel | 1.58e-15 | 52 |
occipital lobe | 2.20e-15 | 10 |
visual cortex | 2.20e-15 | 10 |
neocortex | 2.20e-15 | 10 |
regional part of brain | 1.11e-14 | 46 |
ectoderm-derived structure | 2.00e-14 | 95 |
ectoderm | 2.00e-14 | 95 |
presumptive ectoderm | 2.00e-14 | 95 |
ecto-epithelium | 4.62e-13 | 73 |
neurectoderm | 5.34e-12 | 64 |
neural plate | 5.34e-12 | 64 |
presumptive neural plate | 5.34e-12 | 64 |
brain grey matter | 4.38e-11 | 29 |
regional part of telencephalon | 4.38e-11 | 29 |
telencephalon | 4.38e-11 | 29 |
gray matter | 7.27e-11 | 34 |
anterior neural tube | 7.40e-11 | 40 |
regional part of forebrain | 3.57e-10 | 39 |
forebrain | 3.57e-10 | 39 |
future forebrain | 3.57e-10 | 39 |
regional part of cerebral cortex | 1.44e-09 | 17 |
cerebral cortex | 1.03e-08 | 21 |
cerebral hemisphere | 1.03e-08 | 21 |
pallium | 1.03e-08 | 21 |
testis | 5.62e-08 | 14 |
pre-chordal neural plate | 9.17e-08 | 49 |
male reproductive organ | 2.75e-07 | 15 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.