FFCP PHASE1:Mm9::chr2:156904948..156905012,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=320706|HGNC=|UniProt=A2ACV6|association_with_transcript=0bp_to_ENSMUST00000069098,NM_001164663,uc008nol.2_5end|description=CAGE_peak_2_at_9830001H06Rik_5end|id=chr2:156904948..156905012,-|ontology_enrichment_celltype=CL:0000221!2.19e-12!44;CL:0000133!2.19e-12!44;CL:0002319!6.18e-12!43;CL:0000540!1.07e-10!33;CL:0000047!1.07e-10!33;CL:0000031!1.07e-10!33;CL:0000404!1.07e-10!33;CL:0000117!3.49e-09!23;CL:0000337!3.49e-09!23;CL:0000055!4.22e-09!50;CL:0000393!3.34e-08!39;CL:0000211!3.34e-08!39|ontology_enrichment_celltype_v019_2=CL:0000221,2.03e-12,44;CL:0000133,2.03e-12,44;CL:0002319,5.77e-12,43;CL:0000540,1.00e-10,33;CL:0000047,1.00e-10,33;CL:0000031,1.00e-10,33;CL:0000404,1.00e-10,33;CL:0000117,3.31e-09,23;CL:0000337,3.31e-09,23;CL:0000393,3.19e-08,39;CL:0000211,3.19e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.32e-18!102;UBERON:0000924!8.32e-18!102;UBERON:0006601!8.32e-18!102;UBERON:0000073!5.21e-15!75;UBERON:0001016!5.21e-15!75;UBERON:0001017!5.42e-15!73;UBERON:0005743!5.42e-15!73;UBERON:0002346!1.87e-14!71;UBERON:0003075!1.87e-14!71;UBERON:0007284!1.87e-14!71;UBERON:0000033!1.67e-10!63;UBERON:0001049!5.52e-10!52;UBERON:0005068!5.52e-10!52;UBERON:0006241!5.52e-10!52;UBERON:0007135!5.52e-10!52;UBERON:0000468!1.24e-08!333;UBERON:0003056!3.00e-08!49;UBERON:0000955!3.37e-08!50;UBERON:0006238!3.37e-08!50;UBERON:0002616!8.41e-08!49;UBERON:0000025!9.35e-08!114;UBERON:0002048!1.06e-07!14;UBERON:0000117!1.06e-07!14;UBERON:0000171!1.06e-07!14;UBERON:0000170!1.06e-07!14;UBERON:0005597!1.06e-07!14;UBERON:0000118!1.06e-07!14;UBERON:0004111!2.59e-07!122;UBERON:0000922!9.02e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.61e-16,92;UBERON:0004121,1.87e-15,95;UBERON:0000924,1.87e-15,95;UBERON:0006601,1.87e-15,95;UBERON:0001016,4.76e-15,75;UBERON:0001017,4.95e-15,73;UBERON:0002346,3.08e-12,64;UBERON:0003075,3.08e-12,64;UBERON:0007284,3.08e-12,64;UBERON:0010371,1.37e-11,73;UBERON:0001049,5.21e-10,52;UBERON:0005068,5.21e-10,52;UBERON:0006241,5.21e-10,52;UBERON:0007135,5.21e-10,52;UBERON:0000073,1.56e-09,54;UBERON:0000955,2.80e-08,47;UBERON:0006238,2.80e-08,47;UBERON:0003056,2.86e-08,49;UBERON:0002616,7.12e-08,46;UBERON:0000025,1.01e-07,114;UBERON:0002048,1.02e-07,14;UBERON:0000117,1.02e-07,14;UBERON:0000171,1.02e-07,14;UBERON:0000170,1.02e-07,14;UBERON:0005597,1.02e-07,14;UBERON:0000118,1.02e-07,14;UBERON:0000922,2.63e-07,320;UBERON:0004111,2.80e-07,122|phase1_expression=10.890121603126,0.348975407639361,0.909998478779072,0,0,1.00727563147134,0.467225281191051,0,0,0.234064526321993,0,0,0,0,1.33243904726265,0.809901069559304,0,0.473193248037357,0.548457734422955,0,6.03807360072595,1.39007331681239,1.56719873483361,0,0.22940928106717,0,0.86152399231815,0.215471232685889,0,0.252030129759931,0.443461021310609,0,0,0,2.02196133825892,0.664938581433969,2.04169356262369,0.418531630736908,0.7813353445238,0,0,0,0,3.77690453926732,3.54819259268301,3.85448179539531,4.69434806608824,10.247182349881,5.93152693383074,7.77719596297134,5.45947044338914,10.062679505548,0,0,0,1.80081605225163,2.29226751951005,5.15672092277442,11.1274053472779,10.0508286061686,14.5781222806421,5.42151251310611,3.55717918444456,5.84934816232909,9.88866362566974,8.5257613793532,10.1864037576258,12.6792040756113,11.716926190858,9.99043943654511,14.0917724105426,15.7108041422092,9.49734726091938,12.0040983230655,13.9934387686625,12.8690630125403,4.40463523997555,6.76742891851495,7.0659005297872,14.2437190748609,15.3699241252048,14.5855743755893,8.09630697104005,7.87867654044352,6.57032465440283,7.95497180778903,8.82704420954438,10.6247684120421,5.07365495332333,7.63272757078534,11.3047150593654,1.72084775396277,0,0.539703191637817,0.649776417447669,0,2.38755514223978,3.40860645156115,3.63700406444016,3.18005617059306,10.4224130634744,3.84979432242953,5.09610479413291,21.3320010945999,1.29894624606728,0.253359865475099,0.505524445014783,1.48439043634778,1.03575153458869,9.50029690014878,7.80683970447611,9.74289530598852,8.53277339847416,8.74191315205211,10.4653949350777,8.16832843642891,3.46072954828123,6.07317299063629,6.19227386364912,7.76480879747564,2.87093973998512,2.90925151881133,0,42.7459963636859,62.8340120440365,1.78819938646014,2.39630249011841,2.39961092397363,2.1601938602421,7.48953197024113,7.32000964509802,9.29842205635197,4.51943232499919,6.39288643325826,6.2336413367868,9.89671704713322,9.57290020192973,3.4833951770826,1.76905930903572,1.26265113531884,10.0192741081282,10.5754968039398,8.82304436046211,10.5493372485001,15.3082123090488,13.5800543501941,18.646643187386,5.95017752699736,8.191583731448,10.5899404893979,9.50136070485324,7.67185063496512,8.61946472599353,7.3132954969655,6.99659263787008,7.36426787228425,0,1.02939162845886,0.852490498186778,4.97101854085205,7.27030785941398,7.02242039697958,7.33908680314152,9.64144735562279,6.63348585415727,6.0458825635106,8.85302224618743,9.92505410120941,8.3925523455875,7.38753588355929,8.431156192769,6.2865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| ||
|EntrezGene=320706 | |||
|HGNC= | |||
|UniProt=A2ACV6 | |||
|association_with_transcript=0bp_to_ENSMUST00000069098,NM_001164663,uc008nol.2_5end | |||
|description=CAGE_peak_2_at_9830001H06Rik_5end | |||
|id=chr2:156904948..156905012,- | |||
|ontology_enrichment_celltype=CL:0000221!2.19e-12!44;CL:0000133!2.19e-12!44;CL:0002319!6.18e-12!43;CL:0000540!1.07e-10!33;CL:0000047!1.07e-10!33;CL:0000031!1.07e-10!33;CL:0000404!1.07e-10!33;CL:0000117!3.49e-09!23;CL:0000337!3.49e-09!23;CL:0000055!4.22e-09!50;CL:0000393!3.34e-08!39;CL:0000211!3.34e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.03e-12,44;CL:0000133,2.03e-12,44;CL:0002319,5.77e-12,43;CL:0000540,1.00e-10,33;CL:0000047,1.00e-10,33;CL:0000031,1.00e-10,33;CL:0000404,1.00e-10,33;CL:0000117,3.31e-09,23;CL:0000337,3.31e-09,23;CL:0000393,3.19e-08,39;CL:0000211,3.19e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.32e-18!102;UBERON:0000924!8.32e-18!102;UBERON:0006601!8.32e-18!102;UBERON:0000073!5.21e-15!75;UBERON:0001016!5.21e-15!75;UBERON:0001017!5.42e-15!73;UBERON:0005743!5.42e-15!73;UBERON:0002346!1.87e-14!71;UBERON:0003075!1.87e-14!71;UBERON:0007284!1.87e-14!71;UBERON:0000033!1.67e-10!63;UBERON:0001049!5.52e-10!52;UBERON:0005068!5.52e-10!52;UBERON:0006241!5.52e-10!52;UBERON:0007135!5.52e-10!52;UBERON:0000468!1.24e-08!333;UBERON:0003056!3.00e-08!49;UBERON:0000955!3.37e-08!50;UBERON:0006238!3.37e-08!50;UBERON:0002616!8.41e-08!49;UBERON:0000025!9.35e-08!114;UBERON:0002048!1.06e-07!14;UBERON:0000117!1.06e-07!14;UBERON:0000171!1.06e-07!14;UBERON:0000170!1.06e-07!14;UBERON:0005597!1.06e-07!14;UBERON:0000118!1.06e-07!14;UBERON:0004111!2.59e-07!122;UBERON:0000922!9.02e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.61e-16,92;UBERON:0004121,1.87e-15,95;UBERON:0000924,1.87e-15,95;UBERON:0006601,1.87e-15,95;UBERON:0001016,4.76e-15,75;UBERON:0001017,4.95e-15,73;UBERON:0002346,3.08e-12,64;UBERON:0003075,3.08e-12,64;UBERON:0007284,3.08e-12,64;UBERON:0010371,1.37e-11,73;UBERON:0001049,5.21e-10,52;UBERON:0005068,5.21e-10,52;UBERON:0006241,5.21e-10,52;UBERON:0007135,5.21e-10,52;UBERON:0000073,1.56e-09,54;UBERON:0000955,2.80e-08,47;UBERON:0006238,2.80e-08,47;UBERON:0003056,2.86e-08,49;UBERON:0002616,7.12e-08,46;UBERON:0000025,1.01e-07,114;UBERON:0002048,1.02e-07,14;UBERON:0000117,1.02e-07,14;UBERON:0000171,1.02e-07,14;UBERON:0000170,1.02e-07,14;UBERON:0005597,1.02e-07,14;UBERON:0000118,1.02e-07,14;UBERON:0000922,2.63e-07,320;UBERON:0004111,2.80e-07,122 | |||
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| |||
|short_description=p2@9830001H06Rik | |||
}} |
Revision as of 22:38, 13 September 2013
Short description: | p2@9830001H06Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_9830001H06Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000069098, NM_001164663, uc008nol.2_5end |
EntrezGene: | 9830001H06Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.03e-12 | 44 |
neurectodermal cell | 2.03e-12 | 44 |
neural cell | 5.77e-12 | 43 |
neuron | 1.00e-10 | 33 |
neuronal stem cell | 1.00e-10 | 33 |
neuroblast | 1.00e-10 | 33 |
electrically signaling cell | 1.00e-10 | 33 |
CNS neuron (sensu Vertebrata) | 3.31e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.31e-09 | 23 |
electrically responsive cell | 3.19e-08 | 39 |
electrically active cell | 3.19e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.61e-16 | 92 |
ectoderm-derived structure | 1.87e-15 | 95 |
ectoderm | 1.87e-15 | 95 |
presumptive ectoderm | 1.87e-15 | 95 |
nervous system | 4.76e-15 | 75 |
central nervous system | 4.95e-15 | 73 |
neurectoderm | 3.08e-12 | 64 |
neural plate | 3.08e-12 | 64 |
presumptive neural plate | 3.08e-12 | 64 |
ecto-epithelium | 1.37e-11 | 73 |
neural tube | 5.21e-10 | 52 |
neural rod | 5.21e-10 | 52 |
future spinal cord | 5.21e-10 | 52 |
neural keel | 5.21e-10 | 52 |
regional part of nervous system | 1.56e-09 | 54 |
brain | 2.80e-08 | 47 |
future brain | 2.80e-08 | 47 |
pre-chordal neural plate | 2.86e-08 | 49 |
regional part of brain | 7.12e-08 | 46 |
tube | 1.01e-07 | 114 |
lung | 1.02e-07 | 14 |
respiratory tube | 1.02e-07 | 14 |
respiration organ | 1.02e-07 | 14 |
pair of lungs | 1.02e-07 | 14 |
lung primordium | 1.02e-07 | 14 |
lung bud | 1.02e-07 | 14 |
embryo | 2.63e-07 | 320 |
anatomical conduit | 2.80e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.