FFCP PHASE1:Mm9::chr2:157386501..157386525,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18111|HGNC=|MCL_coexpression_id=1320|UniProt=|association_with_transcript=-219bp_to_ENSMUST00000134513_5end|description=CAGE_peak_2_at_Nnat_5end|id=chr2:157386501..157386525,+|ontology_enrichment_celltype=CL:0000117!5.66e-12!23;CL:0000337!5.66e-12!23;CL:0000540!1.74e-11!33;CL:0000047!1.74e-11!33;CL:0000031!1.74e-11!33;CL:0000404!1.74e-11!33;CL:0000393!1.04e-07!39;CL:0000211!1.04e-07!39;CL:0002319!6.95e-07!43;CL:0000221!8.85e-07!44;CL:0000133!8.85e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,7.15e-15,23;CL:0000337,7.15e-15,23;CL:0002609,4.08e-09,6;CL:0000540,6.41e-09,33;CL:0000047,6.41e-09,33;CL:0000031,6.41e-09,33;CL:0000404,6.41e-09,33;CL:0000393,7.23e-07,39;CL:0000211,7.23e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.93e-15!71;UBERON:0003075!1.93e-15!71;UBERON:0007284!1.93e-15!71;UBERON:0004121!1.27e-14!102;UBERON:0000924!1.27e-14!102;UBERON:0006601!1.27e-14!102;UBERON:0003056!1.13e-12!49;UBERON:0001017!6.97e-12!73;UBERON:0005743!6.97e-12!73;UBERON:0000033!8.65e-12!63;UBERON:0000073!2.63e-11!75;UBERON:0001016!2.63e-11!75;UBERON:0001049!4.18e-11!52;UBERON:0005068!4.18e-11!52;UBERON:0006241!4.18e-11!52;UBERON:0007135!4.18e-11!52;UBERON:0000955!7.19e-10!50;UBERON:0006238!7.19e-10!50;UBERON:0002616!7.84e-10!49;UBERON:0003080!9.37e-10!40;UBERON:0002780!1.51e-09!39;UBERON:0001890!1.51e-09!39;UBERON:0006240!1.51e-09!39;UBERON:0000468!6.85e-08!333;UBERON:0000007!2.04e-07!8;UBERON:0003296!2.04e-07!8;UBERON:0010133!2.04e-07!8;UBERON:0000922!4.53e-07!328;UBERON:0002020!7.30e-07!34|ontology_enrichment_uberon_v019_2=UBERON:0003056,2.33e-18,49;UBERON:0002780,8.37e-16,39;UBERON:0001890,8.37e-16,39;UBERON:0006240,8.37e-16,39;UBERON:0002346,1.97e-15,64;UBERON:0003075,1.97e-15,64;UBERON:0007284,1.97e-15,64;UBERON:0003080,3.12e-15,40;UBERON:0000073,9.72e-14,54;UBERON:0001049,1.69e-13,52;UBERON:0005068,1.69e-13,52;UBERON:0006241,1.69e-13,52;UBERON:0007135,1.69e-13,52;UBERON:0000007,2.30e-13,8;UBERON:0003296,2.30e-13,8;UBERON:0010133,2.30e-13,8;UBERON:0010371,2.08e-12,73;UBERON:0002616,2.44e-12,46;UBERON:0000955,6.23e-12,47;UBERON:0006238,6.23e-12,47;UBERON:0004121,1.35e-11,95;UBERON:0000924,1.35e-11,95;UBERON:0006601,1.35e-11,95;UBERON:0001017,5.17e-11,73;UBERON:0001016,1.70e-10,75;UBERON:0010314,2.75e-10,92;UBERON:0001894,2.83e-10,10;UBERON:0006222,2.83e-10,10;UBERON:0002020,1.39e-09,34;UBERON:0003528,3.96e-08,29;UBERON:0002791,3.96e-08,29;UBERON:0001893,3.96e-08,29|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0.468129052643987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0,0,0,3.84401275633236,8.46385566835253,1.90149421051854,0,0,0,0,0,0,0,10.4726508431562,5.26523159493594,2.94454945891935,1.14260393761521,0.441737081903227,4.89963196859816,5.271500906003,4.5960939330501,1.10115880999389,0.383062014255563,0.307213066512487,8.04506355154182,8.14240028061446,14.5855743755893,0.837548997004143,0.56276261003168,4.12555268997387,0.883885756421003,2.13557521198654,3.35519002485541,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0.148442139064825,0.867426633830679,0.304465478312141,0.230615497256059,1.20578112442098,1.64624189989987,0.251333182659351,1.97755974187499,0,0,0.161766849947409,0.441683036920787,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.599162557619291,0,13.5706700281894,0.521472960576829,0,0,0.973447578406546,0.305518091550949,0,0,0,6.76626303406059,0.689706313300419,0.720248519221397,10.2479276128286,6.80364991513279,5.25266253167884,2.34254311399322,0.517406741478031,0.215567992932842,1.32374256117473,0.175951124163949,0.876782929710299,1.66828349535359,0.348252166522167,0.411564272815887,1.79130840136644,0,0,0,0,1.40715635988658,0.36012412292203,0.710234206755631,0.196764231747404,0.308534225774757,0,0,0,0.16455984991348,0.164167464079095,0,0,0,0,0.210289948564127,11.216602749342,0,0,7.25180051819795,8.36052018697579,0.38660238396628,0.605050573870028,0.667134131534611,0.190225626112559,0,0.164698954724011,0,0.198956472041151,0.19496408711912,0,0,0,0,1.25673363870702,1.1270773567308,1.22190796707189,0.581857461502877,0.350679099451593,0,0,0,0,0,0.166845105716094,0,0.224862112384854,0,0,0.25462585178142,0,0,0.274561413188081,1.43768206527355,0,0,0,0,0,0.369506380333209,0.757965647081939,0,3.90413697282933,3.52035372432753,0.837531287209079,0.714130922658041,0.975668239288994,0.788175720530955,0.8858587585951,0.478364305972461,0.327726629431476,0.518054945597687,0.289298117163023,0,0,0,0.827810238914197,0.160550589987792,0.468846746368813,0,0,0.315508219416257,0.390438744296638,0.430846795465598,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0.283880170416537,0.35613120733451,0.488660878060728,0.164970122972535,0,1.21390318077491,1.209294227859,1.88605079755898,0.295301892880773,0.614870295887855,0,0.727067458955011,0,0,0,0,13.2771446243977,21.7873923777885,36.9965835618678,17.5756368725906,21.4581682707151,44.5922044005176,27.4796864405542,3.34911444026059,0,0,0,0.49465875882444,0,0,0.596861720015682,0.656563598980245,0,0.18542530201051,0,1.03193433981611,1.66675074632741,0,0,0,0,0,0,0,1.26534397432454,0,0.972048067396211,1.88179466413022,0.87345025498471,0.809186078308924,0.0826534557253359,0,0,0,0,0.598066184175915,0.330916980914195,0.777804753376191,0,1.18269287843545,0.821500670520278,0.5208175393758,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,1.12950368523413,0.460325236507177,1.14579102687879,1.20297227640581,0,0,0,0,0,0.51776031175182,1.14166082342594,5.1873233542134,1.70733605754134,0.972426868273176,0.419226325255965,0.183843508450014,0.44449345560323,0.824140228955577,0.320919209591815,0.252697211763798,0.50695859978048,0.188626341386076,0.280924522409647,0.384150914429216,0.459483751644906,0.952587382566147,0.695305955669133,0.578727661391115,0.824171801606613,1.17759136107518,0.342869252385415,1.4198064492747,0.715308569841963,0.726732083161643,0.376437521661322,1.52306294205018,1.82927972872773,0.789209134313529,0.543216455383447,0.561142271657738,0.118635018124174,1.47756723563345,1.63692417267876,0.154936841185966,0.192906610981141,0.999242311751784,0.233931608445408,0.429742108096597,0.382576664137687,0,0.463735671240843|short_description=p2@Nnat}} | ||
|EntrezGene=18111 | |||
|HGNC= | |||
|MCL_coexpression_id=1320 | |||
|UniProt= | |||
|association_with_transcript=-219bp_to_ENSMUST00000134513_5end | |||
|description=CAGE_peak_2_at_Nnat_5end | |||
|id=chr2:157386501..157386525,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.66e-12!23;CL:0000337!5.66e-12!23;CL:0000540!1.74e-11!33;CL:0000047!1.74e-11!33;CL:0000031!1.74e-11!33;CL:0000404!1.74e-11!33;CL:0000393!1.04e-07!39;CL:0000211!1.04e-07!39;CL:0002319!6.95e-07!43;CL:0000221!8.85e-07!44;CL:0000133!8.85e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.15e-15,23;CL:0000337,7.15e-15,23;CL:0002609,4.08e-09,6;CL:0000540,6.41e-09,33;CL:0000047,6.41e-09,33;CL:0000031,6.41e-09,33;CL:0000404,6.41e-09,33;CL:0000393,7.23e-07,39;CL:0000211,7.23e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.93e-15!71;UBERON:0003075!1.93e-15!71;UBERON:0007284!1.93e-15!71;UBERON:0004121!1.27e-14!102;UBERON:0000924!1.27e-14!102;UBERON:0006601!1.27e-14!102;UBERON:0003056!1.13e-12!49;UBERON:0001017!6.97e-12!73;UBERON:0005743!6.97e-12!73;UBERON:0000033!8.65e-12!63;UBERON:0000073!2.63e-11!75;UBERON:0001016!2.63e-11!75;UBERON:0001049!4.18e-11!52;UBERON:0005068!4.18e-11!52;UBERON:0006241!4.18e-11!52;UBERON:0007135!4.18e-11!52;UBERON:0000955!7.19e-10!50;UBERON:0006238!7.19e-10!50;UBERON:0002616!7.84e-10!49;UBERON:0003080!9.37e-10!40;UBERON:0002780!1.51e-09!39;UBERON:0001890!1.51e-09!39;UBERON:0006240!1.51e-09!39;UBERON:0000468!6.85e-08!333;UBERON:0000007!2.04e-07!8;UBERON:0003296!2.04e-07!8;UBERON:0010133!2.04e-07!8;UBERON:0000922!4.53e-07!328;UBERON:0002020!7.30e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,2.33e-18,49;UBERON:0002780,8.37e-16,39;UBERON:0001890,8.37e-16,39;UBERON:0006240,8.37e-16,39;UBERON:0002346,1.97e-15,64;UBERON:0003075,1.97e-15,64;UBERON:0007284,1.97e-15,64;UBERON:0003080,3.12e-15,40;UBERON:0000073,9.72e-14,54;UBERON:0001049,1.69e-13,52;UBERON:0005068,1.69e-13,52;UBERON:0006241,1.69e-13,52;UBERON:0007135,1.69e-13,52;UBERON:0000007,2.30e-13,8;UBERON:0003296,2.30e-13,8;UBERON:0010133,2.30e-13,8;UBERON:0010371,2.08e-12,73;UBERON:0002616,2.44e-12,46;UBERON:0000955,6.23e-12,47;UBERON:0006238,6.23e-12,47;UBERON:0004121,1.35e-11,95;UBERON:0000924,1.35e-11,95;UBERON:0006601,1.35e-11,95;UBERON:0001017,5.17e-11,73;UBERON:0001016,1.70e-10,75;UBERON:0010314,2.75e-10,92;UBERON:0001894,2.83e-10,10;UBERON:0006222,2.83e-10,10;UBERON:0002020,1.39e-09,34;UBERON:0003528,3.96e-08,29;UBERON:0002791,3.96e-08,29;UBERON:0001893,3.96e-08,29 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0.468129052643987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0,0,0,3.84401275633236,8.46385566835253,1.90149421051854,0,0,0,0,0,0,0,10.4726508431562,5.26523159493594,2.94454945891935,1.14260393761521,0.441737081903227,4.89963196859816,5.271500906003,4.5960939330501,1.10115880999389,0.383062014255563,0.307213066512487,8.04506355154182,8.14240028061446,14.5855743755893,0.837548997004143,0.56276261003168,4.12555268997387,0.883885756421003,2.13557521198654,3.35519002485541,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0.148442139064825,0.867426633830679,0.304465478312141,0.230615497256059,1.20578112442098,1.64624189989987,0.251333182659351,1.97755974187499,0,0,0.161766849947409,0.441683036920787,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.599162557619291,0,13.5706700281894,0.521472960576829,0,0,0.973447578406546,0.305518091550949,0,0,0,6.76626303406059,0.689706313300419,0.720248519221397,10.2479276128286,6.80364991513279,5.25266253167884,2.34254311399322,0.517406741478031,0.215567992932842,1.32374256117473,0.175951124163949,0.876782929710299,1.66828349535359,0.348252166522167,0.411564272815887,1.79130840136644,0,0,0,0,1.40715635988658,0.36012412292203,0.710234206755631,0.196764231747404,0.308534225774757,0,0,0,0.16455984991348,0.164167464079095,0,0,0,0,0.210289948564127,11.216602749342,0,0,7.25180051819795,8.36052018697579,0.38660238396628,0.605050573870028,0.667134131534611,0.190225626112559,0,0.164698954724011,0,0.198956472041151,0.19496408711912,0,0,0,0,1.25673363870702,1.1270773567308,1.22190796707189,0.581857461502877,0.350679099451593,0,0,0,0,0,0.166845105716094,0,0.224862112384854,0,0,0.25462585178142,0,0,0.274561413188081,1.43768206527355,0,0,0,0,0,0.369506380333209,0.757965647081939,0,3.90413697282933,3.52035372432753,0.837531287209079,0.714130922658041,0.975668239288994,0.788175720530955,0.8858587585951,0.478364305972461,0.327726629431476,0.518054945597687,0.289298117163023,0,0,0,0.827810238914197,0.160550589987792,0.468846746368813,0,0,0.315508219416257,0.390438744296638,0.430846795465598,0.238968797952552,0.222798674082394,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0.321321316421807,0.283880170416537,0.35613120733451,0.488660878060728,0.164970122972535,0,1.21390318077491,1.209294227859,1.88605079755898,0.295301892880773,0.614870295887855,0,0.727067458955011,0,0,0,0,13.2771446243977,21.7873923777885,36.9965835618678,17.5756368725906,21.4581682707151,44.5922044005176,27.4796864405542,3.34911444026059,0,0,0,0.49465875882444,0,0,0.596861720015682,0.656563598980245,0,0.18542530201051,0,1.03193433981611,1.66675074632741,0,0,0,0,0,0,0,1.26534397432454,0,0.972048067396211,1.88179466413022,0.87345025498471,0.809186078308924,0.0826534557253359,0,0,0,0,0.598066184175915,0.330916980914195,0.777804753376191,0,1.18269287843545,0.821500670520278,0.5208175393758,0,0,0,0,0.202725215290164,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,1.12950368523413,0.460325236507177,1.14579102687879,1.20297227640581,0,0,0,0,0,0.51776031175182,1.14166082342594,5.1873233542134,1.70733605754134,0.972426868273176,0.419226325255965,0.183843508450014,0.44449345560323,0.824140228955577,0.320919209591815,0.252697211763798,0.50695859978048,0.188626341386076,0.280924522409647,0.384150914429216,0.459483751644906,0.952587382566147,0.695305955669133,0.578727661391115,0.824171801606613,1.17759136107518,0.342869252385415,1.4198064492747,0.715308569841963,0.726732083161643,0.376437521661322,1.52306294205018,1.82927972872773,0.789209134313529,0.543216455383447,0.561142271657738,0.118635018124174,1.47756723563345,1.63692417267876,0.154936841185966,0.192906610981141,0.999242311751784,0.233931608445408,0.429742108096597,0.382576664137687,0,0.463735671240843 | |||
|short_description=p2@Nnat | |||
}} |
Revision as of 22:39, 13 September 2013
Short description: | p2@Nnat |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nnat_5end |
Coexpression cluster: | MCL_coexpression_mm9:1320 |
Association with transcript: | -219bp_to_ENSMUST00000134513_5end |
EntrezGene: | Nnat |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.15e-15 | 23 |
neuroblast (sensu Vertebrata) | 7.15e-15 | 23 |
neuron of cerebral cortex | 4.08e-09 | 6 |
neuron | 6.41e-09 | 33 |
neuronal stem cell | 6.41e-09 | 33 |
neuroblast | 6.41e-09 | 33 |
electrically signaling cell | 6.41e-09 | 33 |
electrically responsive cell | 7.23e-07 | 39 |
electrically active cell | 7.23e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 2.33e-18 | 49 |
regional part of forebrain | 8.37e-16 | 39 |
forebrain | 8.37e-16 | 39 |
future forebrain | 8.37e-16 | 39 |
neurectoderm | 1.97e-15 | 64 |
neural plate | 1.97e-15 | 64 |
presumptive neural plate | 1.97e-15 | 64 |
anterior neural tube | 3.12e-15 | 40 |
regional part of nervous system | 9.72e-14 | 54 |
neural tube | 1.69e-13 | 52 |
neural rod | 1.69e-13 | 52 |
future spinal cord | 1.69e-13 | 52 |
neural keel | 1.69e-13 | 52 |
pituitary gland | 2.30e-13 | 8 |
gland of diencephalon | 2.30e-13 | 8 |
neuroendocrine gland | 2.30e-13 | 8 |
ecto-epithelium | 2.08e-12 | 73 |
regional part of brain | 2.44e-12 | 46 |
brain | 6.23e-12 | 47 |
future brain | 6.23e-12 | 47 |
ectoderm-derived structure | 1.35e-11 | 95 |
ectoderm | 1.35e-11 | 95 |
presumptive ectoderm | 1.35e-11 | 95 |
central nervous system | 5.17e-11 | 73 |
nervous system | 1.70e-10 | 75 |
structure with developmental contribution from neural crest | 2.75e-10 | 92 |
diencephalon | 2.83e-10 | 10 |
future diencephalon | 2.83e-10 | 10 |
gray matter | 1.39e-09 | 34 |
brain grey matter | 3.96e-08 | 29 |
regional part of telencephalon | 3.96e-08 | 29 |
telencephalon | 3.96e-08 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.