FFCP PHASE1:Mm9::chr2:5816371..5816454,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=57743|HGNC=|MCL_coexpression_id=463|UniProt=Q9CYJ6,A2ATT8,Q9JLR1,P61620,A2ATT9,Q3TTK6|association_with_transcript=0bp_to_ENSMUST00000026925,NM_021305,uc008ifx.1,uc008ify.1,uc008ifz.1,uc012boy.1_5end|description=CAGE_peak_1_at_Sec61a2_5end|id=chr2:5816371..5816454,-|ontology_enrichment_celltype=CL:0000540!1.57e-10!33;CL:0000047!1.57e-10!33;CL:0000031!1.57e-10!33;CL:0000404!1.57e-10!33;CL:0000393!1.68e-09!39;CL:0000211!1.68e-09!39;CL:0000117!2.41e-09!23;CL:0000337!2.41e-09!23|ontology_enrichment_celltype_v019_2=CL:0000540,1.57e-10,33;CL:0000047,1.57e-10,33;CL:0000031,1.57e-10,33;CL:0000404,1.57e-10,33;CL:0000393,1.68e-09,39;CL:0000211,1.68e-09,39;CL:0000117,2.41e-09,23;CL:0000337,2.41e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.39e-18!73;UBERON:0005743!3.39e-18!73;UBERON:0002346!6.25e-18!71;UBERON:0003075!6.25e-18!71;UBERON:0007284!6.25e-18!71;UBERON:0000073!7.18e-18!75;UBERON:0001016!7.18e-18!75;UBERON:0004121!1.12e-17!102;UBERON:0000924!1.12e-17!102;UBERON:0006601!1.12e-17!102;UBERON:0000033!1.38e-15!63;UBERON:0001049!1.85e-15!52;UBERON:0005068!1.85e-15!52;UBERON:0006241!1.85e-15!52;UBERON:0007135!1.85e-15!52;UBERON:0000955!1.86e-13!50;UBERON:0006238!1.86e-13!50;UBERON:0003056!4.37e-13!49;UBERON:0002616!5.17e-13!49;UBERON:0002020!1.05e-12!34;UBERON:0003080!4.83e-11!40;UBERON:0002780!1.82e-10!39;UBERON:0001890!1.82e-10!39;UBERON:0006240!1.82e-10!39;UBERON:0002791!1.11e-09!29;UBERON:0003528!1.11e-09!29;UBERON:0001893!1.11e-09!29;UBERON:0000468!4.92e-08!333;UBERON:0000153!1.68e-07!94;UBERON:0002021!7.51e-07!10;UBERON:0000411!7.51e-07!10;UBERON:0001950!7.51e-07!10;UBERON:0000956!9.21e-07!21;UBERON:0001869!9.21e-07!21;UBERON:0000203!9.21e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.48e-18,64;UBERON:0003075,2.48e-18,64;UBERON:0007284,2.48e-18,64;UBERON:0001017,3.39e-18,73;UBERON:0001016,7.18e-18,75;UBERON:0004121,1.27e-17,95;UBERON:0000924,1.27e-17,95;UBERON:0006601,1.27e-17,95;UBERON:0010314,9.70e-17,92;UBERON:0010371,1.32e-16,73;UBERON:0000073,4.65e-16,54;UBERON:0001049,1.85e-15,52;UBERON:0005068,1.85e-15,52;UBERON:0006241,1.85e-15,52;UBERON:0007135,1.85e-15,52;UBERON:0003056,4.37e-13,49;UBERON:0002020,1.05e-12,34;UBERON:0000955,2.77e-12,47;UBERON:0006238,2.77e-12,47;UBERON:0002616,7.54e-12,46;UBERON:0003080,4.83e-11,40;UBERON:0002780,1.82e-10,39;UBERON:0001890,1.82e-10,39;UBERON:0006240,1.82e-10,39;UBERON:0003528,1.11e-09,29;UBERON:0002791,1.11e-09,29;UBERON:0001893,1.11e-09,29;UBERON:0000922,1.50e-07,320;UBERON:0002021,7.51e-07,10;UBERON:0000411,7.51e-07,10;UBERON:0001950,7.51e-07,10;UBERON:0000956,9.21e-07,21;UBERON:0001869,9.21e-07,21;UBERON:0000203,9.21e-07,21|phase1_expression=36.1936394456834,10.1202868215415,9.09998478779072,19.3577095236371,16.5295590882295,12.5909453933917,10.2789561862031,6.71441281896197,13.2341398822567,11.2350972634557,7.53359060192222,11.8062795313098,7.53283211697305,6.29426897416781,9.32707333083856,6.47920855647443,6.99561878128147,5.52058789376916,8.5010948835558,8.06340338416257,30.8707143248383,9.4326403640841,8.35839325244593,6.23970448894286,5.27641346454491,7.46501553349526,7.32295393470427,9.48073423817912,8.36103045608045,9.57714493087737,11.7517170647311,8.89042942843484,9.84103660135312,15.8481681015439,20.5084650023405,13.2987716286794,16.3335485009895,2.51118978442145,2.3440060335714,4.18818995179039,0.588231488031014,1.36609096991689,2.42755176515577,23.1650145075062,25.2428558736591,25.8800920547971,17.2126095756569,10.0291571935005,13.4008571468028,13.4156630361256,16.3784113301674,14.3752564364972,7.88578248471361,7.25362142011344,3.6970317905671,15.6928255981928,14.6132054368766,14.4388185837684,33.3822160418336,37.5583595283143,40.5652098243955,16.9422266034566,13.3394219416671,6.29929802096979,4.94433181283487,4.9733608046227,9.28760342607055,8.4528027170742,30.0699875694585,24.7060867146994,25.6596452848686,53.4167340835113,48.8119475503066,21.313399063402,23.098758515395,16.5459381589804,27.5289702498472,33.326395240234,35.6367157154485,32.8396856448183,37.8758844513976,35.4221091978597,32.6644108831616,32.6402313818374,40.1859391653011,42.1318877227345,49.6877165988869,43.2446714314697,18.098560206631,19.8753203080846,12.7540375028738,4.30211938490693,5.439770669662,3.77792234146472,3.89865850468601,6.72040330646003,18.5386634573912,24.3715361286623,14.8078022623635,13.4269038313929,21.9715734851622,23.0987659345772,15.2883143823987,7.11066703153331,8.22665955842614,7.60079596425296,8.08839112023653,9.81981365583916,11.9111426477699,19.1490359393624,20.8182392119363,19.485790611977,21.2166257475574,24.4170677695249,27.7509348840263,17.4676561948249,12.6069433544531,21.6899035379867,8.84610551949874,23.1326595424795,24.0717255121829,16.4857586065976,22.3670113461747,26.9358333250623,34.5587066242201,9.45191104271788,6.70964697233154,10.7982491578813,9.02198612218759,47.9330046095433,28.8225379775735,22.9947464366542,44.8466746096073,53.4445305820391,35.94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| ||
|EntrezGene=57743 | |||
|HGNC= | |||
|MCL_coexpression_id=463 | |||
|UniProt=Q9CYJ6,A2ATT8,Q9JLR1,P61620,A2ATT9,Q3TTK6 | |||
|association_with_transcript=0bp_to_ENSMUST00000026925,NM_021305,uc008ifx.1,uc008ify.1,uc008ifz.1,uc012boy.1_5end | |||
|description=CAGE_peak_1_at_Sec61a2_5end | |||
|id=chr2:5816371..5816454,- | |||
|ontology_enrichment_celltype=CL:0000540!1.57e-10!33;CL:0000047!1.57e-10!33;CL:0000031!1.57e-10!33;CL:0000404!1.57e-10!33;CL:0000393!1.68e-09!39;CL:0000211!1.68e-09!39;CL:0000117!2.41e-09!23;CL:0000337!2.41e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.57e-10,33;CL:0000047,1.57e-10,33;CL:0000031,1.57e-10,33;CL:0000404,1.57e-10,33;CL:0000393,1.68e-09,39;CL:0000211,1.68e-09,39;CL:0000117,2.41e-09,23;CL:0000337,2.41e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.39e-18!73;UBERON:0005743!3.39e-18!73;UBERON:0002346!6.25e-18!71;UBERON:0003075!6.25e-18!71;UBERON:0007284!6.25e-18!71;UBERON:0000073!7.18e-18!75;UBERON:0001016!7.18e-18!75;UBERON:0004121!1.12e-17!102;UBERON:0000924!1.12e-17!102;UBERON:0006601!1.12e-17!102;UBERON:0000033!1.38e-15!63;UBERON:0001049!1.85e-15!52;UBERON:0005068!1.85e-15!52;UBERON:0006241!1.85e-15!52;UBERON:0007135!1.85e-15!52;UBERON:0000955!1.86e-13!50;UBERON:0006238!1.86e-13!50;UBERON:0003056!4.37e-13!49;UBERON:0002616!5.17e-13!49;UBERON:0002020!1.05e-12!34;UBERON:0003080!4.83e-11!40;UBERON:0002780!1.82e-10!39;UBERON:0001890!1.82e-10!39;UBERON:0006240!1.82e-10!39;UBERON:0002791!1.11e-09!29;UBERON:0003528!1.11e-09!29;UBERON:0001893!1.11e-09!29;UBERON:0000468!4.92e-08!333;UBERON:0000153!1.68e-07!94;UBERON:0002021!7.51e-07!10;UBERON:0000411!7.51e-07!10;UBERON:0001950!7.51e-07!10;UBERON:0000956!9.21e-07!21;UBERON:0001869!9.21e-07!21;UBERON:0000203!9.21e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.48e-18,64;UBERON:0003075,2.48e-18,64;UBERON:0007284,2.48e-18,64;UBERON:0001017,3.39e-18,73;UBERON:0001016,7.18e-18,75;UBERON:0004121,1.27e-17,95;UBERON:0000924,1.27e-17,95;UBERON:0006601,1.27e-17,95;UBERON:0010314,9.70e-17,92;UBERON:0010371,1.32e-16,73;UBERON:0000073,4.65e-16,54;UBERON:0001049,1.85e-15,52;UBERON:0005068,1.85e-15,52;UBERON:0006241,1.85e-15,52;UBERON:0007135,1.85e-15,52;UBERON:0003056,4.37e-13,49;UBERON:0002020,1.05e-12,34;UBERON:0000955,2.77e-12,47;UBERON:0006238,2.77e-12,47;UBERON:0002616,7.54e-12,46;UBERON:0003080,4.83e-11,40;UBERON:0002780,1.82e-10,39;UBERON:0001890,1.82e-10,39;UBERON:0006240,1.82e-10,39;UBERON:0003528,1.11e-09,29;UBERON:0002791,1.11e-09,29;UBERON:0001893,1.11e-09,29;UBERON:0000922,1.50e-07,320;UBERON:0002021,7.51e-07,10;UBERON:0000411,7.51e-07,10;UBERON:0001950,7.51e-07,10;UBERON:0000956,9.21e-07,21;UBERON:0001869,9.21e-07,21;UBERON:0000203,9.21e-07,21 | |||
|phase1_expression=36.1936394456834,10.1202868215415,9.09998478779072,19.3577095236371,16.5295590882295,12.5909453933917,10.2789561862031,6.71441281896197,13.2341398822567,11.2350972634557,7.53359060192222,11.8062795313098,7.53283211697305,6.29426897416781,9.32707333083856,6.47920855647443,6.99561878128147,5.52058789376916,8.5010948835558,8.06340338416257,30.8707143248383,9.4326403640841,8.35839325244593,6.23970448894286,5.27641346454491,7.46501553349526,7.32295393470427,9.48073423817912,8.36103045608045,9.57714493087737,11.7517170647311,8.89042942843484,9.84103660135312,15.8481681015439,20.5084650023405,13.2987716286794,16.3335485009895,2.51118978442145,2.3440060335714,4.18818995179039,0.588231488031014,1.36609096991689,2.42755176515577,23.1650145075062,25.2428558736591,25.8800920547971,17.2126095756569,10.0291571935005,13.4008571468028,13.4156630361256,16.3784113301674,14.3752564364972,7.88578248471361,7.25362142011344,3.6970317905671,15.6928255981928,14.6132054368766,14.4388185837684,33.3822160418336,37.5583595283143,40.5652098243955,16.9422266034566,13.3394219416671,6.29929802096979,4.94433181283487,4.9733608046227,9.28760342607055,8.4528027170742,30.0699875694585,24.7060867146994,25.6596452848686,53.4167340835113,48.8119475503066,21.313399063402,23.098758515395,16.5459381589804,27.5289702498472,33.326395240234,35.6367157154485,32.8396856448183,37.8758844513976,35.4221091978597,32.6644108831616,32.6402313818374,40.1859391653011,42.1318877227345,49.6877165988869,43.2446714314697,18.098560206631,19.8753203080846,12.7540375028738,4.30211938490693,5.439770669662,3.77792234146472,3.89865850468601,6.72040330646003,18.5386634573912,24.3715361286623,14.8078022623635,13.4269038313929,21.9715734851622,23.0987659345772,15.2883143823987,7.11066703153331,8.22665955842614,7.60079596425296,8.08839112023653,9.81981365583916,11.9111426477699,19.1490359393624,20.8182392119363,19.485790611977,21.2166257475574,24.4170677695249,27.7509348840263,17.4676561948249,12.6069433544531,21.6899035379867,8.84610551949874,23.1326595424795,24.0717255121829,16.4857586065976,22.3670113461747,26.9358333250623,34.5587066242201,9.45191104271788,6.70964697233154,10.7982491578813,9.02198612218759,47.9330046095433,28.8225379775735,22.9947464366542,44.8466746096073,53.4445305820391,35.9473317088039,45.5897949220399,26.8855920564835,20.029522268225,20.217820674694,15.3622554797126,32.1397494117878,28.5078609497506,27.0093194708024,35.2649273735573,35.5150525569931,32.6689986726367,29.0475346135159,19.1440494346872,26.7304311236724,36.3083673922213,41.7004164268559,31.1257940047156,31.6973864117182,33.7804601526502,28.6037169607041,30.253208556411,5.61770549850588,6.94839349209731,4.83077948972507,27.3406019746863,28.6121793176937,21.7875094367828,25.8051761787879,22.0375939557092,23.7571353846563,22.0907247512887,21.4618721119695,20.3171695718875,19.7471819896177,18.5509234409378,16.7001747664463,14.1813987802572,14.4903076092093,15.0311189011616,45.6329188384156,39.4124665412659,8.59088835757875,7.1401652999157,28.1540490706509,34.6032641072053,25.2580224191303,30.6558957427481,26.4629872175396,18.6421113590308,14.2358718463353,10.5407331023367,17.0907941984183,13.131127154716,15.5971269695296,8.08937467788799,9.94235029423593,12.9441827615339,26.7431740343845,32.5608260937727,37.1935527721165,20.9760867680674,25.6017283061266,27.8439204964565,18.7180149887802,10.6279306545314,14.6008816892479,13.6970851953199,8.89357881261447,14.181833985868,15.3316016188298,13.2668646307064,8.52012509831712,13.0235666266305,15.2775511068852,12.9463261852865,13.943629502653,15.1008777253445,18.6898668485561,13.3970741160661,12.4815069245824,7.57736633841335,5.74071723270119,4.3419916922703,11.4546977903295,31.645065765671,27.5410810187024,25.6315079520534,23.2343345805617,22.6133447546451,18.8054476299951,16.3912264200551,17.8127712839996,15.723992965063,18.656207932926,11.3065687153859,11.2245238212832,14.0309586824066,6.03165135757089,2.71952841909355,6.88469982226651,14.6246475541508,41.9037039868137,43.0166889793386,13.9344703570174,47.9694761688309,25.2406575533005,29.2829058222479,26.2816545234015,20.790285421872,26.9586395639697,21.7968928707401,23.074209995469,27.4720506436633,27.2748566783101,33.0960955914461,25.4072752522801,25.2853157207502,28.0165570088151,17.6518031580613,5.30980553359851,15.7807413500738,19.0463840887793,11.6935149448657,7.67784921490009,12.2974059177571,15.247269296925,18.9037539328303,15.6858846489277,6.32073515871632,9.48767477174989,5.15677716240934,18.0432991049508,26.6490419166339,24.3194325511578,22.9340627483804,28.0197569154792,24.6148968290857,25.6696472139309,13.0919928119278,23.2324990983073,19.7003825903353,8.82113592219848,13.8504452470843,28.9021323785671,20.2048298509322,16.4733834724328,15.1009627765456,15.1570035047522,48.766854428764,6.4930934703184,19.1939787205797,14.8155621895769,10.9253705062721,9.97867862363484,10.066239621087,8.15896463970505,9.93655311497972,9.39759821870082,17.184071124272,33.0571113292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| |||
|short_description=p1@Sec61a2 | |||
}} |
Revision as of 00:11, 14 September 2013
Short description: | p1@Sec61a2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sec61a2_5end |
Coexpression cluster: | MCL_coexpression_mm9:463 |
Association with transcript: | 0bp_to_ENSMUST00000026925, NM_021305, uc008ifx.1, uc008ify.1, uc008ifz.1, uc012boy.1_5end |
EntrezGene: | Sec61a2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.57e-10 | 33 |
neuronal stem cell | 1.57e-10 | 33 |
neuroblast | 1.57e-10 | 33 |
electrically signaling cell | 1.57e-10 | 33 |
electrically responsive cell | 1.68e-09 | 39 |
electrically active cell | 1.68e-09 | 39 |
CNS neuron (sensu Vertebrata) | 2.41e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.41e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.48e-18 | 64 |
neural plate | 2.48e-18 | 64 |
presumptive neural plate | 2.48e-18 | 64 |
central nervous system | 3.39e-18 | 73 |
nervous system | 7.18e-18 | 75 |
ectoderm-derived structure | 1.27e-17 | 95 |
ectoderm | 1.27e-17 | 95 |
presumptive ectoderm | 1.27e-17 | 95 |
structure with developmental contribution from neural crest | 9.70e-17 | 92 |
ecto-epithelium | 1.32e-16 | 73 |
regional part of nervous system | 4.65e-16 | 54 |
neural tube | 1.85e-15 | 52 |
neural rod | 1.85e-15 | 52 |
future spinal cord | 1.85e-15 | 52 |
neural keel | 1.85e-15 | 52 |
pre-chordal neural plate | 4.37e-13 | 49 |
gray matter | 1.05e-12 | 34 |
brain | 2.77e-12 | 47 |
future brain | 2.77e-12 | 47 |
regional part of brain | 7.54e-12 | 46 |
anterior neural tube | 4.83e-11 | 40 |
regional part of forebrain | 1.82e-10 | 39 |
forebrain | 1.82e-10 | 39 |
future forebrain | 1.82e-10 | 39 |
brain grey matter | 1.11e-09 | 29 |
regional part of telencephalon | 1.11e-09 | 29 |
telencephalon | 1.11e-09 | 29 |
embryo | 1.50e-07 | 320 |
occipital lobe | 7.51e-07 | 10 |
visual cortex | 7.51e-07 | 10 |
neocortex | 7.51e-07 | 10 |
cerebral cortex | 9.21e-07 | 21 |
cerebral hemisphere | 9.21e-07 | 21 |
pallium | 9.21e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.