FFCP PHASE1:Mm9::chr2:6793634..6793661,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14007|HGNC=|MCL_coexpression_id=1325|UniProt=|association_with_transcript=0bp_to_ENSMUST00000150624_5end|description=CAGE_peak_8_at_Celf2_5end|id=chr2:6793634..6793661,-|ontology_enrichment_celltype=CL:0000221!6.07e-15!44;CL:0000133!6.07e-15!44;CL:0002319!1.70e-14!43;CL:0000540!6.49e-13!33;CL:0000047!6.49e-13!33;CL:0000031!6.49e-13!33;CL:0000404!6.49e-13!33;CL:0000055!9.14e-11!50;CL:0000393!1.94e-09!39;CL:0000211!1.94e-09!39;CL:0000117!5.15e-08!23;CL:0000337!5.15e-08!23|ontology_enrichment_celltype_v019_2=CL:0000221,2.69e-15,44;CL:0000133,2.69e-15,44;CL:0002319,7.76e-15,43;CL:0000540,3.26e-13,33;CL:0000047,3.26e-13,33;CL:0000031,3.26e-13,33;CL:0000404,3.26e-13,33;CL:0000393,3.00e-09,39;CL:0000211,3.00e-09,39;CL:0000117,3.48e-08,23;CL:0000337,3.48e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!8.97e-29!102;UBERON:0000924!8.97e-29!102;UBERON:0006601!8.97e-29!102;UBERON:0000073!1.19e-28!75;UBERON:0001016!1.19e-28!75;UBERON:0001017!2.21e-28!73;UBERON:0005743!2.21e-28!73;UBERON:0000033!5.79e-25!63;UBERON:0000955!6.90e-22!50;UBERON:0006238!6.90e-22!50;UBERON:0002346!7.12e-22!71;UBERON:0003075!7.12e-22!71;UBERON:0007284!7.12e-22!71;UBERON:0003056!1.48e-21!49;UBERON:0002616!3.77e-21!49;UBERON:0001049!2.93e-20!52;UBERON:0005068!2.93e-20!52;UBERON:0006241!2.93e-20!52;UBERON:0007135!2.93e-20!52;UBERON:0003080!1.90e-18!40;UBERON:0002780!6.02e-18!39;UBERON:0001890!6.02e-18!39;UBERON:0006240!6.02e-18!39;UBERON:0002791!7.12e-17!29;UBERON:0003528!7.12e-17!29;UBERON:0001893!7.12e-17!29;UBERON:0002020!1.49e-16!34;UBERON:0007811!6.18e-15!86;UBERON:0000153!5.03e-14!94;UBERON:0000956!9.87e-14!21;UBERON:0001869!9.87e-14!21;UBERON:0000203!9.87e-14!21;UBERON:0002619!4.94e-11!17;UBERON:0000468!2.52e-09!333;UBERON:0002021!4.05e-07!10;UBERON:0000411!4.05e-07!10;UBERON:0001950!4.05e-07!10;UBERON:0000025!6.03e-07!114;UBERON:0004111!6.05e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.26e-32,95;UBERON:0000924,4.26e-32,95;UBERON:0006601,4.26e-32,95;UBERON:0001016,2.29e-29,75;UBERON:0001017,4.31e-29,73;UBERON:0010371,1.34e-26,73;UBERON:0002346,5.25e-26,64;UBERON:0003075,5.25e-26,64;UBERON:0007284,5.25e-26,64;UBERON:0003056,4.39e-22,49;UBERON:0000073,9.20e-22,54;UBERON:0000955,2.56e-21,47;UBERON:0006238,2.56e-21,47;UBERON:0001049,9.41e-21,52;UBERON:0005068,9.41e-21,52;UBERON:0006241,9.41e-21,52;UBERON:0007135,9.41e-21,52;UBERON:0002616,1.44e-20,46;UBERON:0003080,6.79e-19,40;UBERON:0002780,2.22e-18,39;UBERON:0001890,2.22e-18,39;UBERON:0006240,2.22e-18,39;UBERON:0003528,2.81e-17,29;UBERON:0002791,2.81e-17,29;UBERON:0001893,2.81e-17,29;UBERON:0002020,5.98e-17,34;UBERON:0010314,7.64e-17,92;UBERON:0000956,4.71e-14,21;UBERON:0001869,4.71e-14,21;UBERON:0000203,4.71e-14,21;UBERON:0002619,2.78e-11,17;UBERON:0002021,2.88e-07,10;UBERON:0000411,2.88e-07,10;UBERON:0001950,2.88e-07,10|phase1_expression=4.16387002472464,0.348975407639361,0,0,0,0.16787927191189,0,0.129123323441576,0.84473233291,1.17032263160997,0.68487187290202,0.478632953972018,1.02720437958723,0.262261207256992,0,0,0,0.157731082679119,0,0,4.16712121740242,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6366586336825,1.01376931219515,0.550640256485045,2.34717403304412,12.6454590700659,5.27246838562732,6.9994763666742,2.93971485413261,2.87505128729943,0,0.725362142011344,0,0.257259436035947,0.573066879877513,1.03134418455488,3.84401275633236,6.87688273053643,1.26766280701236,1.35537812827653,3.55717918444456,0,0,0,2.69640099466564,4.2264013585371,28.6183329971398,25.9211401596846,22.2944459032465,2.57085885963423,3.53389665522582,18.741092279888,14.6643570657902,17.4651569455904,3.30347642998166,8.55505165170758,6.91229399653096,4.48413378282659,4.20843160571084,5.73004707612436,5.02529398202486,5.6276261003168,7.18151764551008,2.35702868378934,3.70166370077668,4.10078780815661,4.01348824665875,2.87171928405785,1.15945795480671,0.860423876981386,0.679971333707751,1.61910957491345,1.29955283489534,2.68816132258401,2.10666630197628,0,0,0,6.90132756905734,0,0,0,1.5154372870785,1.01343946190039,2.02209778005913,2.74041311325744,1.55362730188303,1.33597925158342,1.90833859442749,0.304465478312141,0.691846491768175,1.05505848386836,1.29347577849275,2.38766523526383,0.988779870937496,20.3885093257075,0.884610551949874,1.7794353494215,1.32504911076236,0,1.86391761218122,8.19786231632332,8.3778682725382,0.510914110417183,0,0,0,7.48953197024113,16.4700217014706,9.92669381691629,11.1247564923057,12.7857728665165,7.2725815595846,10.707923362472,4.58277137326423,1.8661045591514,2.77995034277042,4.8401626853889,1.95180664444056,4.36813998423599,3.78130472591233,6.63101198477146,9.18492738542926,8.96796041993949,9.0890672822937,9.05461797586555,0.431135985865684,1.70195472151037,2.81521798662318,3.06874025398605,1.94633074457919,2.43776516565517,1.64625709126355,1.39323986772945,0,0,0,1.86413195281952,0.938104239924385,1.62055855314913,2.3674473558521,1.57411385397923,1.54267112887378,1.8602715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| ||
|EntrezGene=14007 | |||
|HGNC= | |||
|MCL_coexpression_id=1325 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000150624_5end | |||
|description=CAGE_peak_8_at_Celf2_5end | |||
|id=chr2:6793634..6793661,- | |||
|ontology_enrichment_celltype=CL:0000221!6.07e-15!44;CL:0000133!6.07e-15!44;CL:0002319!1.70e-14!43;CL:0000540!6.49e-13!33;CL:0000047!6.49e-13!33;CL:0000031!6.49e-13!33;CL:0000404!6.49e-13!33;CL:0000055!9.14e-11!50;CL:0000393!1.94e-09!39;CL:0000211!1.94e-09!39;CL:0000117!5.15e-08!23;CL:0000337!5.15e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.69e-15,44;CL:0000133,2.69e-15,44;CL:0002319,7.76e-15,43;CL:0000540,3.26e-13,33;CL:0000047,3.26e-13,33;CL:0000031,3.26e-13,33;CL:0000404,3.26e-13,33;CL:0000393,3.00e-09,39;CL:0000211,3.00e-09,39;CL:0000117,3.48e-08,23;CL:0000337,3.48e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.97e-29!102;UBERON:0000924!8.97e-29!102;UBERON:0006601!8.97e-29!102;UBERON:0000073!1.19e-28!75;UBERON:0001016!1.19e-28!75;UBERON:0001017!2.21e-28!73;UBERON:0005743!2.21e-28!73;UBERON:0000033!5.79e-25!63;UBERON:0000955!6.90e-22!50;UBERON:0006238!6.90e-22!50;UBERON:0002346!7.12e-22!71;UBERON:0003075!7.12e-22!71;UBERON:0007284!7.12e-22!71;UBERON:0003056!1.48e-21!49;UBERON:0002616!3.77e-21!49;UBERON:0001049!2.93e-20!52;UBERON:0005068!2.93e-20!52;UBERON:0006241!2.93e-20!52;UBERON:0007135!2.93e-20!52;UBERON:0003080!1.90e-18!40;UBERON:0002780!6.02e-18!39;UBERON:0001890!6.02e-18!39;UBERON:0006240!6.02e-18!39;UBERON:0002791!7.12e-17!29;UBERON:0003528!7.12e-17!29;UBERON:0001893!7.12e-17!29;UBERON:0002020!1.49e-16!34;UBERON:0007811!6.18e-15!86;UBERON:0000153!5.03e-14!94;UBERON:0000956!9.87e-14!21;UBERON:0001869!9.87e-14!21;UBERON:0000203!9.87e-14!21;UBERON:0002619!4.94e-11!17;UBERON:0000468!2.52e-09!333;UBERON:0002021!4.05e-07!10;UBERON:0000411!4.05e-07!10;UBERON:0001950!4.05e-07!10;UBERON:0000025!6.03e-07!114;UBERON:0004111!6.05e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.26e-32,95;UBERON:0000924,4.26e-32,95;UBERON:0006601,4.26e-32,95;UBERON:0001016,2.29e-29,75;UBERON:0001017,4.31e-29,73;UBERON:0010371,1.34e-26,73;UBERON:0002346,5.25e-26,64;UBERON:0003075,5.25e-26,64;UBERON:0007284,5.25e-26,64;UBERON:0003056,4.39e-22,49;UBERON:0000073,9.20e-22,54;UBERON:0000955,2.56e-21,47;UBERON:0006238,2.56e-21,47;UBERON:0001049,9.41e-21,52;UBERON:0005068,9.41e-21,52;UBERON:0006241,9.41e-21,52;UBERON:0007135,9.41e-21,52;UBERON:0002616,1.44e-20,46;UBERON:0003080,6.79e-19,40;UBERON:0002780,2.22e-18,39;UBERON:0001890,2.22e-18,39;UBERON:0006240,2.22e-18,39;UBERON:0003528,2.81e-17,29;UBERON:0002791,2.81e-17,29;UBERON:0001893,2.81e-17,29;UBERON:0002020,5.98e-17,34;UBERON:0010314,7.64e-17,92;UBERON:0000956,4.71e-14,21;UBERON:0001869,4.71e-14,21;UBERON:0000203,4.71e-14,21;UBERON:0002619,2.78e-11,17;UBERON:0002021,2.88e-07,10;UBERON:0000411,2.88e-07,10;UBERON:0001950,2.88e-07,10 | |||
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| |||
|short_description=p8@Celf2 | |||
}} |
Revision as of 00:20, 14 September 2013
Short description: | p8@Celf2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Celf2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1325 |
Association with transcript: | 0bp_to_ENSMUST00000150624_5end |
EntrezGene: | Celf2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.69e-15 | 44 |
neurectodermal cell | 2.69e-15 | 44 |
neural cell | 7.76e-15 | 43 |
neuron | 3.26e-13 | 33 |
neuronal stem cell | 3.26e-13 | 33 |
neuroblast | 3.26e-13 | 33 |
electrically signaling cell | 3.26e-13 | 33 |
electrically responsive cell | 3.00e-09 | 39 |
electrically active cell | 3.00e-09 | 39 |
CNS neuron (sensu Vertebrata) | 3.48e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.48e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 4.26e-32 | 95 |
ectoderm | 4.26e-32 | 95 |
presumptive ectoderm | 4.26e-32 | 95 |
nervous system | 2.29e-29 | 75 |
central nervous system | 4.31e-29 | 73 |
ecto-epithelium | 1.34e-26 | 73 |
neurectoderm | 5.25e-26 | 64 |
neural plate | 5.25e-26 | 64 |
presumptive neural plate | 5.25e-26 | 64 |
pre-chordal neural plate | 4.39e-22 | 49 |
regional part of nervous system | 9.20e-22 | 54 |
brain | 2.56e-21 | 47 |
future brain | 2.56e-21 | 47 |
neural tube | 9.41e-21 | 52 |
neural rod | 9.41e-21 | 52 |
future spinal cord | 9.41e-21 | 52 |
neural keel | 9.41e-21 | 52 |
regional part of brain | 1.44e-20 | 46 |
anterior neural tube | 6.79e-19 | 40 |
regional part of forebrain | 2.22e-18 | 39 |
forebrain | 2.22e-18 | 39 |
future forebrain | 2.22e-18 | 39 |
brain grey matter | 2.81e-17 | 29 |
regional part of telencephalon | 2.81e-17 | 29 |
telencephalon | 2.81e-17 | 29 |
gray matter | 5.98e-17 | 34 |
structure with developmental contribution from neural crest | 7.64e-17 | 92 |
cerebral cortex | 4.71e-14 | 21 |
cerebral hemisphere | 4.71e-14 | 21 |
pallium | 4.71e-14 | 21 |
regional part of cerebral cortex | 2.78e-11 | 17 |
occipital lobe | 2.88e-07 | 10 |
visual cortex | 2.88e-07 | 10 |
neocortex | 2.88e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.